Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p088354 Quercus lobata HOM05D003066 ORTHO05D050631 7.8e-32 139.8 69 100.0
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 8.9e-20 99.8 58 86.2
QL10p046036 Quercus lobata HOM05D003066 ORTHO05D000074 8.9e-20 99.8 52 94.2
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 3.4e-19 97.8 58 81.0
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 7.6e-19 96.7 58 81.0
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 7.6e-19 96.7 58 81.0
Actinidia14715 Actinidia chinensis HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 81.0
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 79.3
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 79.3
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 79.3
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 81.0
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 81.0
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 9.9e-19 96.3 58 81.0
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 1.3e-18 95.9 52 88.5
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.3e-18 95.9 58 81.0
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 1.3e-18 95.9 52 88.5
Actinidia18188 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.7e-18 95.5 52 88.5
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 1.7e-18 95.5 58 79.3
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 1.7e-18 95.5 58 79.3
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 1.7e-18 95.5 58 79.3
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 1.7e-18 95.5 58 79.3
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 1.7e-18 95.5 52 88.5
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 1.7e-18 95.5 58 79.3
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 77.6
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 77.6
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 2.2e-18 95.1 58 79.3
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 2.9e-18 94.7 58 79.3
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 2.9e-18 94.7 58 79.3
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 2.9e-18 94.7 58 79.3
Actinidia18185 Actinidia chinensis HOM05D003066 ORTHO05D004162 3.8e-18 94.4 52 86.5
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 3.8e-18 94.4 52 86.5
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 3.8e-18 94.4 58 79.3
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 3.8e-18 94.4 58 79.3
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 3.8e-18 94.4 58 77.6
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 3.8e-18 94.4 58 81.0
Os01g0711400 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 3.8e-18 94.4 52 86.5
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 3.8e-18 94.4 52 86.5
TPR.G13011 Trifolium pratense HOM05D003066 ORTHO05D004162 3.8e-18 94.4 58 79.3
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 3.8e-18 94.4 58 79.3
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 3.8e-18 94.4 52 86.5
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 77.6
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 77.6
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 77.6
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 77.6
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 4.9e-18 94.0 58 79.3
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 6.4e-18 93.6 52 86.5
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 6.4e-18 93.6 58 79.3
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 6.4e-18 93.6 58 77.6
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 6.4e-18 93.6 58 77.6
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 6.4e-18 93.6 58 77.6
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 6.4e-18 93.6 58 77.6
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 75.9
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
Lj7A271T27 Lonicera japonica HOM05D003066 ORTHO05D004162 8.4e-18 93.2 52 84.6
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 79.3
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 8.4e-18 93.2 58 77.6
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 77.6
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 77.6
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 75.9
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 75.9
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 75.9
Os06g0611900 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 1.1e-17 92.8 52 84.6
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 77.6
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 79.3
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 1.1e-17 92.8 58 79.3
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 75.9
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 1.4e-17 92.4 52 84.6
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 1.4e-17 92.4 52 84.6
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 1.4e-17 92.4 58 77.6
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 1.9e-17 92.0 58 75.9
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 1.9e-17 92.0 58 75.9
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 1.9e-17 92.0 52 84.6
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 1.9e-17 92.0 58 77.6
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 1.9e-17 92.0 52 84.6
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 1.9e-17 92.0 58 75.9
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 77.6
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 75.9
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 2.4e-17 91.7 52 84.6
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 75.9
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 75.9
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 74.1
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 74.1
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 2.4e-17 91.7 58 77.6
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 75.9
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 75.9
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 77.6
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 75.9
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 75.9
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 75.9
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 3.2e-17 91.3 58 75.9
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 4.2e-17 90.9 58 74.1
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 4.2e-17 90.9 54 85.2
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 4.2e-17 90.9 58 75.9
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 75.9
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 75.9
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 75.9
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 75.9
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 75.9
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 75.9
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 77.6
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 5.4e-17 90.5 58 74.1
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 7.1e-17 90.1 58 75.9
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 7.1e-17 90.1 52 82.7
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 7.1e-17 90.1 58 75.9
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 9.3e-17 89.7 58 75.9
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 9.3e-17 89.7 52 80.8
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 1.2e-16 89.4 58 74.1
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 1.2e-16 89.4 58 74.1
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 1.2e-16 89.4 52 82.7
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 1.2e-16 89.4 58 74.1
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 1.2e-16 89.4 58 72.4
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 1.2e-16 89.4 58 72.4
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 1.6e-16 89.0 52 78.8
Lsat_1_v5_gn_5_188440 Lactuca sativa HOM05D003066 ORTHO05D004162 1.6e-16 89.0 58 74.1
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 2.7e-16 88.2 58 74.1
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 2.7e-16 88.2 52 82.7
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 2.7e-16 88.2 58 74.1
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 7.8e-16 86.7 47 87.2
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 7.8e-16 86.7 58 72.4
Lsat_1_v5_gn_7_104540 Lactuca sativa HOM05D003066 ORTHO05D004162 1.3e-15 85.9 58 72.4
Lsat_1_v5_gn_9_73621 Lactuca sativa HOM05D003066 ORTHO05D004162 1.3e-15 85.9 58 72.4
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 1.3e-15 85.9 52 80.8
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 1.7e-15 85.5 58 74.1
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 1.7e-15 85.5 52 78.8
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 6.6e-15 83.6 58 70.7
Lsat_1_v5_gn_5_26441 Lactuca sativa HOM05D003066 ORTHO05D004162 1.5e-14 82.4 58 69.0
Zm00001eb259860 Zea mays HOM05D003066 ORTHO05D050631 1.5e-14 82.4 52 78.8
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 3.3e-14 81.3 43 88.4
Lsat_1_v5_gn_7_44401 Lactuca sativa HOM05D003066 ORTHO05D004162 5.6e-14 80.5 58 67.2
QL08p021213 Quercus lobata HOM05D003066 ORTHO05D000004 9.6e-14 79.7 44 88.6
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 1.3e-13 79.3 55 70.9
PRCOL_00000289 Prasinoderma coloniale HOM05D003066 ORTHO05D004162 6.2e-13 77.0 58 65.5
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 1.1e-12 76.3 58 63.8
Cfa026270 Carpinus fangiana HOM05D003066 ORTHO05D004162 1.2e-08 62.8 53 54.7
Atru.chr7.1061 Acer truncatum HOM05D003066 ORTHO05D004162 1.6e-08 62.4 38 73.7
Zm00001eb263030 Zea mays HOM05D003066 ORTHO05D004162 1.3e-07 59.3 32 84.4
Actinidia14716 Actinidia chinensis HOM05D003066 ORTHO05D004162 3.0e-07 58.2 42 64.3


User provided reference genes

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