Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 4.5e-228 794.3 404 100.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.4e-213 746.1 405 94.1
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.7e-190 669.5 405 81.5
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.8e-190 668.7 404 82.2
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 5.2e-184 647.9 416 79.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 3.3e-183 645.2 388 82.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.2e-182 642.5 348 87.9
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.2e-182 642.5 385 82.3
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.8e-182 641.3 376 84.3
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.3e-182 641.0 385 81.0
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.1e-181 638.6 347 87.3
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 3.1e-181 638.6 344 88.7
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 5.3e-181 637.9 406 78.6
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 9.1e-181 637.1 404 78.2
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.2e-180 636.7 410 79.0
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.2e-180 636.7 407 79.4
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.7e-180 635.6 384 80.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.7e-180 635.6 415 77.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.5e-180 635.2 398 81.4
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 4.5e-180 634.8 405 78.5
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 7.7e-180 634.0 394 79.9
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.3e-179 633.3 364 84.6
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.7e-179 632.9 388 79.9
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.2e-179 632.5 381 80.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.2e-179 632.5 406 77.8
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.2e-179 632.5 381 80.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.8e-179 631.7 406 77.6
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.8e-179 631.7 385 79.7
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.8e-179 631.7 393 79.1
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 8.5e-179 630.6 400 78.5
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 8.5e-179 630.6 392 80.1
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 8.5e-179 630.6 397 78.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 8.5e-179 630.6 410 77.6
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.9e-178 629.4 383 80.7
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.9e-178 629.4 358 84.1
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.5e-178 629.0 347 86.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.5e-178 629.0 341 87.4
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.5e-178 629.0 386 79.3
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 4.2e-178 628.2 380 80.3
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.5e-178 627.9 409 77.3
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.5e-178 627.9 384 80.7
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 9.4e-178 627.1 387 79.1
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-177 626.7 348 85.1
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.2e-177 626.7 409 77.3
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-177 626.7 409 77.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.2e-177 626.7 386 80.1
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.1e-177 625.9 387 82.4
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.1e-177 625.9 386 80.1
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.1e-177 625.9 406 77.1
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.7e-177 625.5 411 77.6
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.7e-177 625.5 389 79.4
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.7e-177 625.5 392 78.3
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.0e-177 624.0 385 79.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.0e-176 623.6 348 84.8
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.4e-176 623.2 417 75.5
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.4e-176 623.2 409 76.0
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.3e-176 622.5 348 85.9
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.3e-176 622.5 360 82.2
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.3e-176 622.5 377 80.4
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.3e-176 622.5 411 77.1
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 3.0e-176 622.1 348 84.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 4.0e-176 621.7 357 82.4
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 5.2e-176 621.3 348 85.6
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 5.2e-176 621.3 348 85.6
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 5.2e-176 621.3 402 76.9
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-175 620.2 360 81.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.5e-175 619.8 399 76.4
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.5e-175 619.8 392 77.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.5e-175 619.8 408 76.2
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.5e-175 619.8 342 85.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.6e-175 619.0 379 78.9
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.6e-175 619.0 386 78.2
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 5.7e-175 617.8 387 78.3
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 7.5e-175 617.5 393 78.4
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 7.5e-175 617.5 343 86.0
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 9.8e-175 617.1 405 76.0
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.7e-174 616.3 387 78.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 3.7e-174 615.1 345 85.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 6.3e-174 614.4 394 77.2
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.1e-173 613.6 374 80.2
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.1e-173 613.6 387 77.0
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.4e-173 612.5 397 76.6
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 3.1e-173 612.1 403 74.9
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 5.4e-173 611.3 376 79.0
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 9.1e-173 610.5 372 79.6
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 3.5e-172 608.6 342 83.6
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 7.7e-172 607.4 393 75.6
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.3e-171 606.7 388 76.5
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.3e-171 606.7 347 81.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.7e-171 606.3 385 76.9
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.8e-171 605.1 380 78.9
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.1e-170 603.6 405 75.1
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 7.2e-170 600.9 389 76.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.2e-169 600.1 307 91.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.6e-169 599.7 454 68.1
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.8e-168 596.3 364 79.4
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.3e-168 595.9 374 79.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 6.8e-168 594.3 356 80.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.2e-166 589.3 302 90.4
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 8.3e-166 587.4 379 76.5
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.4e-165 585.9 300 90.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 3.1e-165 585.5 369 79.7
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.1e-165 585.1 378 76.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.8e-163 578.6 321 86.0
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.8e-161 572.4 388 73.7
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.6e-161 572.0 346 79.2
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 8.0e-161 570.9 338 81.1
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 8.0e-161 570.9 359 77.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-160 570.5 338 81.1
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.8e-157 559.7 413 71.9
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.2e-157 558.9 366 76.2
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.9e-156 554.7 386 72.5
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.3e-155 553.5 500 59.0
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 9.5e-154 547.4 392 71.9
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.1e-152 542.3 344 73.3
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.1e-152 542.3 555 55.7
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 6.8e-152 541.2 549 53.7
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.7e-150 536.6 340 73.2
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.7e-150 536.6 365 70.1
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.1e-149 531.9 373 68.4
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.5e-146 523.5 302 79.1
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 1.5e-135 486.9 242 90.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.3e-131 473.8 344 66.3
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.6e-129 465.7 324 72.8
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.6e-124 450.3 382 62.8
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.6e-124 448.7 307 68.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.3e-123 447.2 368 59.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.1e-112 409.5 291 72.2
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.1e-109 401.0 260 77.3
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.8e-105 386.3 211 84.8
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.9e-101 373.6 345 55.4
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.2e-101 372.9 211 83.4
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.1e-101 371.7 313 58.1
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.5e-94 348.6 263 69.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.1e-88 329.3 210 76.2
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.4e-87 326.2 287 53.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.3e-81 307.8 194 77.8
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 6.1e-68 262.3 126 95.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.8e-67 260.8 318 42.5
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.6e-66 256.9 310 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 9.7e-66 255.0 316 43.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.3e-65 254.6 324 41.4
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 4.8e-65 252.7 339 39.2
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.5e-58 231.1 312 40.7
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-55 220.7 179 65.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.0e-54 218.4 327 39.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.8e-51 207.6 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.4e-48 198.0 113 84.1
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 5.6e-45 186.0 160 61.2
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 9.5e-29 132.1 92 72.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 8.3e-25 119.0 55 92.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.9e-24 117.9 157 47.1
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.2e-19 99.8 62 80.6
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 4.9e-17 93.2 93 60.2
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.7e-15 87.4 49 79.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 1.1e-13 82.0 82 54.9
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 8.1e-12 75.9 33 90.9
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 1.1e-11 75.5 183 35.0
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 7.6e-10 69.3 34 79.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.4e-08 63.2 31 87.1


User provided reference genes

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