Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 8.0e-65 250.4 134 100.0
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 4.0e-56 221.5 119 99.2
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-50 203.4 123 90.2
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-50 203.4 123 90.2
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 8.8e-48 193.7 122 89.3
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 7.7e-44 180.6 123 77.2
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 7.7e-44 180.6 123 77.2
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-43 178.7 139 74.8
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.0e-43 177.9 123 76.4
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 9.5e-42 173.7 121 75.2
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 9.5e-42 173.7 121 75.2
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.7e-41 171.4 121 74.4
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 4.0e-40 168.3 121 73.6
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.2e-40 167.9 121 74.4
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.2e-40 167.9 151 65.6
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 8.9e-40 167.2 121 76.9
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 8.9e-40 167.2 139 67.6
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.2e-39 166.8 121 73.6
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 1.5e-39 166.4 121 72.7
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 2.6e-39 165.6 121 73.6
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.6e-39 165.6 121 73.6
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 3.4e-39 165.2 143 67.1
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 5.7e-39 164.5 121 73.6
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 5.7e-39 164.5 117 70.9
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.5e-39 164.1 123 70.7
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 9.8e-39 163.7 121 71.9
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 1.7e-38 162.9 121 71.9
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.7e-38 162.9 121 71.9
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.9e-38 162.2 133 68.4
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 3.7e-38 161.8 121 73.6
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 6.4e-38 161.0 134 62.7
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 8.3e-38 160.6 121 70.2
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 8.3e-38 160.6 121 70.2
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 8.3e-38 160.6 121 70.2
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.1e-37 160.2 121 70.2
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.4e-37 159.8 121 70.2
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 2.4e-37 159.1 121 69.4
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 3.2e-37 158.7 121 71.9
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 5.4e-37 157.9 121 68.6
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.2e-37 157.1 128 70.3
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 1.6e-36 156.4 122 67.2
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.7e-36 155.6 136 62.5
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 2.7e-36 155.6 122 70.5
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 2.7e-36 155.6 121 70.2
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 3.5e-36 155.2 134 64.2
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 3.5e-36 155.2 123 66.7
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 4.6e-36 154.8 140 60.7
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.0e-35 153.7 119 68.9
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.0e-35 153.7 121 68.6
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.3e-35 153.3 135 62.2
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.7e-35 152.9 123 66.7
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 2.3e-35 152.5 124 65.3
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 2.9e-35 152.1 121 68.6
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 5.0e-35 151.4 121 69.4
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 5.0e-35 151.4 123 65.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.1e-34 150.2 121 65.3
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.1e-34 150.2 134 65.7
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.5e-34 149.8 140 59.3
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.9e-34 149.4 123 67.5
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.9e-34 149.4 138 62.3
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 1.9e-34 149.4 121 65.3
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.3e-34 148.3 140 59.3
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 4.3e-34 148.3 121 64.5
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 5.6e-34 147.9 123 65.9
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.2e-33 146.7 121 64.5
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.2e-33 146.7 121 64.5
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 2.8e-33 145.6 121 66.9
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 4.7e-33 144.8 134 57.5
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.7e-33 144.8 131 61.1
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 4.7e-33 144.8 121 64.5
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 4.7e-33 144.8 118 65.3
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 6.2e-33 144.4 134 56.7
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 6.2e-33 144.4 117 64.1
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 8.0e-33 144.1 119 63.0
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 8.0e-33 144.1 117 64.1
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.0e-32 143.7 121 63.6
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.0e-32 143.7 121 63.6
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 1.4e-32 143.3 118 65.3
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 1.4e-32 143.3 119 61.3
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.4e-32 143.3 121 63.6
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 2.3e-32 142.5 122 63.9
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.1e-32 142.1 121 65.3
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 3.1e-32 142.1 132 57.6
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 5.2e-32 141.4 119 59.7
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 5.2e-32 141.4 119 59.7
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 5.2e-32 141.4 119 59.7
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 5.2e-32 141.4 124 61.3
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 2.0e-31 139.4 119 59.7
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 2.0e-31 139.4 121 61.2
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 2.0e-31 139.4 121 63.6
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 5.8e-31 137.9 117 63.2
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 7.5e-31 137.5 143 55.9
Haze_07845 Corylus avellana HOM05D003241 ORTHO05D003812 9.8e-31 137.1 103 71.8
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 8.3e-30 134.0 142 54.9
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 8.3e-30 134.0 138 57.2
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 8.3e-30 134.0 127 59.1
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.9e-29 132.9 121 60.3
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.9e-29 132.9 153 52.9
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 4.1e-29 131.7 140 57.1
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 4.1e-29 131.7 121 59.5
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 5.4e-29 131.3 120 59.2
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 7.0e-29 131.0 142 52.8
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 9.2e-29 130.6 121 61.2
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 4.6e-28 128.3 122 61.5
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 4.6e-28 128.3 118 60.2
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 6.0e-28 127.9 120 58.3
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 1.7e-27 126.3 120 56.7
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 5.0e-27 124.8 139 51.8
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 4.0e-24 115.2 121 52.9
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 8.9e-24 114.0 135 48.1
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 8.9e-24 114.0 135 48.1
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 5.4e-21 104.8 185 38.9
QL05p063869 Quercus lobata HOM05D003241 ORTHO05D003812 7.1e-21 104.4 109 58.7
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.6e-20 103.2 122 52.5
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 4.6e-20 101.7 121 47.9
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-19 100.1 57 91.2
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 6.6e-19 97.8 121 47.1
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 2.5e-18 95.9 114 49.1
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.3e-18 95.5 129 48.1
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.1e-17 92.8 54 85.2
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 6.2e-17 91.3 133 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 8.1e-17 90.9 112 49.1
TPR.G37958 Trifolium pratense HOM05D003241 ORTHO05D003812 5.2e-16 88.2 118 44.9
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 2.9e-14 82.4 117 47.0
SHI33105 Sapria himalayana HOM05D000743 ORTHO05D000580 4.9e-14 81.6 52 75.0
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.4e-13 78.2 85 52.9
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 6.0e-12 74.7 114 39.5
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 3.9e-11 72.0 112 41.1
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 1.2e-09 67.0 42 73.8
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 6.2e-09 64.7 46 71.7
RcHm_v2.0_Chr1g0362531 Rosa chinensis HOM05D003241 ORTHO05D025469 1.8e-08 63.2 46 69.6
Lju445A0T12 Lonicera japonica HOM05D003241 ORTHO05D003812 5.8e-07 58.2 42 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.9e-07 57.4 60 55.0
Lj1A444T9 Lonicera japonica HOM05D003241 ORTHO05D003812 1.3e-06 57.0 42 61.9


User provided reference genes

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