Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p050688 Quercus lobata HOM05D003237 ORTHO05D003631 6.2e-79 297.7 191 100.0
CiPaw.13G047600 Carya illinoinensis HOM05D003237 ORTHO05D003631 4.2e-35 152.1 195 55.4
Cfa010439 Carpinus fangiana HOM05D003237 ORTHO05D003631 2.1e-34 149.8 190 60.5
TAR636G1985 Trochodendron aralioides HOM05D003237 ORTHO05D003631 5.7e-32 141.7 200 56.0
CiPaw.14G037800 Carya illinoinensis HOM05D003237 ORTHO05D003631 3.8e-28 129.0 190 52.1
Phvul.005G010800 Phaseolus vulgaris HOM05D003237 ORTHO05D003631 1.4e-27 127.1 187 54.5
Haze_03393 Corylus avellana HOM05D003237 ORTHO05D003631 6.1e-26 121.7 184 52.2
Haze_03397 Corylus avellana HOM05D003237 ORTHO05D003631 6.1e-26 121.7 184 52.2
Ciclev10014331m.g Citrus clementina HOM05D003237 ORTHO05D003631 1.4e-25 120.6 213 53.5
Atru.chr3.3010 Acer truncatum HOM05D003237 ORTHO05D003631 8.8e-25 117.9 204 54.9
Manes.11G111400 Manihot esculenta HOM05D003237 ORTHO05D003631 1.5e-24 117.1 198 52.5
Dinv05234 Davidia involucrata HOM05D003237 ORTHO05D003631 3.3e-24 115.9 201 45.8
Glyma.04G128800 Glycine max HOM05D003237 ORTHO05D003631 4.4e-24 115.5 192 55.7
Glyma.06G314900 Glycine max HOM05D003237 ORTHO05D003631 7.4e-24 114.8 126 57.9
Dinv02325 Davidia involucrata HOM05D003237 ORTHO05D003631 9.7e-24 114.4 209 42.6
CANSAT56G4085 Cannabis sativa HOM05D003237 ORTHO05D003631 1.3e-23 114.0 124 59.7
Phvul.011G187000 Phaseolus vulgaris HOM05D003237 ORTHO05D003631 2.8e-23 112.8 193 60.6
VMungo1127G0582 Vigna mungo HOM05D003237 ORTHO05D003631 1.1e-22 110.9 193 61.1
Lj3g0000355 Lotus japonicus HOM05D003237 ORTHO05D003631 1.2e-21 107.5 193 56.0
CANSAT54G1397 Cannabis sativa HOM05D003237 ORTHO05D003631 1.6e-21 107.1 206 46.1
Hund20982 Selenicereus undatus HOM05D003237 ORTHO05D003631 5.9e-21 105.1 129 57.4
GSVIVG01037454001 Vitis vinifera HOM05D003237 ORTHO05D003631 5.9e-21 105.1 200 52.5
Cc01_g07580 Coffea canephora HOM05D003237 ORTHO05D003631 3.2e-19 99.4 199 58.8
GSVIVG01027348001 Vitis vinifera HOM05D003237 ORTHO05D003631 3.2e-19 99.4 209 50.2
Migut.D00714 Erythranthe guttata HOM05D003237 ORTHO05D003631 4.2e-19 99.0 161 44.7
TAR633G2621 Trochodendron aralioides HOM05D003237 ORTHO05D003631 2.7e-18 96.3 62 71.0
TWI75G1610 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 4.7e-18 95.5 212 43.4
FAN21G2928 Fragaria x ananassa HOM05D003237 ORTHO05D003631 4.0e-17 92.4 205 54.1
Solyc01g009090.3 Solanum lycopersicum HOM05D003237 ORTHO05D003631 8.8e-17 91.3 149 47.0
Sopen01g004580 Solanum pennellii HOM05D003237 ORTHO05D003631 8.8e-17 91.3 149 47.0
Psat4g168160 Pisum sativum HOM05D003237 ORTHO05D003631 1.2e-16 90.9 208 51.9
Migut.N02418 Erythranthe guttata HOM05D003237 ORTHO05D003631 1.5e-16 90.5 149 47.7
Nitab4.5_0000428g0160 Nicotiana tabacum HOM05D003237 ORTHO05D003631 1.5e-16 90.5 144 49.3
SGA_v2.0_scaffold79G25511 Striga asiatica HOM05D003237 ORTHO05D003631 2.6e-16 89.7 147 47.6
VMungo1080G0204 Vigna mungo HOM05D003237 ORTHO05D003631 5.7e-16 88.6 122 49.2
Oeu022227.1 Olea europaea HOM05D003237 ORTHO05D003631 7.5e-16 88.2 138 52.9
HanXRQChr03g0091691 Helianthus annuus HOM05D003237 ORTHO05D003631 9.7e-16 87.8 220 37.7
Sc06g0008520 Simmondsia chinensis HOM05D003237 ORTHO05D003631 9.7e-16 87.8 141 46.8
Nitab4.5_0002300g0140 Nicotiana tabacum HOM05D003237 ORTHO05D003631 1.3e-15 87.4 144 48.6
MD00G1031700 Malus domestica HOM05D003237 ORTHO05D003631 2.2e-15 86.7 188 53.7
Ca_14021_v3 Cicer arietinum L. HOM05D003237 ORTHO05D003631 3.7e-15 85.9 194 44.3
Ca_30267_v3 Cicer arietinum L. HOM05D003237 ORTHO05D003631 3.7e-15 85.9 194 44.3
CsaV3_1G042090 Cucumis sativus L. HOM05D003237 ORTHO05D003631 3.7e-15 85.9 144 50.0
MSTRG.17661 Avicennia marina HOM05D003237 ORTHO05D003631 4.8e-15 85.5 205 38.5
AUR62020168 Chenopodium quinoa HOM05D003237 ORTHO05D003631 6.3e-15 85.1 99 57.6
FvH4_3g27130 Fragaria vesca HOM05D003237 ORTHO05D003631 6.3e-15 85.1 205 52.7
FAN25G1344 Fragaria x ananassa HOM05D003237 ORTHO05D003631 8.2e-15 84.7 195 56.9
THA.LOC104826477 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 1.4e-14 84.0 136 47.1
FAN11G2711 Fragaria x ananassa HOM05D003237 ORTHO05D003631 1.8e-14 83.6 204 53.9
Gorai.004G001800 Gossypium raimondii HOM05D003237 ORTHO05D003631 1.8e-14 83.6 194 53.1
Nn7g37294 Nelumbo nucifera HOM05D003237 ORTHO05D003631 2.4e-14 83.2 197 46.2
Aqoxy2G00072 Aquilegia oxysepala HOM05D003237 ORTHO05D003631 3.1e-14 82.8 92 56.5
MELO3C015627.2 Cucumis melo HOM05D003237 ORTHO05D003631 4.1e-14 82.4 149 48.3
MSTRG.12411 Avicennia marina HOM05D003237 ORTHO05D003631 5.3e-14 82.0 137 54.7
Ca_24120_v3 Cicer arietinum L. HOM05D003237 ORTHO05D003631 9.1e-14 81.3 160 46.9
Lsat_1_v5_gn_3_116081 Lactuca sativa HOM05D003237 ORTHO05D003631 9.1e-14 81.3 74 58.1
SalBow3G0543 Salvia bowleyana HOM05D003237 ORTHO05D003631 1.2e-13 80.9 140 50.0
Lalb_Chr15g0079371 Lupinus albus HOM05D003237 ORTHO05D003631 1.6e-13 80.5 108 54.6
Lj3g0022474 Lotus japonicus HOM05D003237 ORTHO05D003631 2.0e-13 80.1 174 54.0
LjContig00266g0015480 Lotus japonicus HOM05D003237 ORTHO05D003631 2.0e-13 80.1 174 54.0
arahy.Tifrunner.gnm1.ann1.F9X6AJ Arachis hypogaea HOM05D003237 ORTHO05D003631 2.7e-13 79.7 85 54.1
Lj3g0023562 Lotus japonicus HOM05D003237 ORTHO05D003631 4.5e-13 79.0 194 50.0
DCAR_031604 Daucus carota HOM05D003237 ORTHO05D003631 7.7e-13 78.2 133 45.9
FAN16G3041 Fragaria x ananassa HOM05D003237 ORTHO05D003631 1.0e-12 77.8 202 53.0
Oeu026659.2 Olea europaea HOM05D003237 ORTHO05D003631 1.0e-12 77.8 136 45.6
CSS0037994 Camellia sinensis var. sinensis HOM05D003237 ORTHO05D003631 1.7e-12 77.0 197 51.3
Lalb_Chr03g0032411 Lupinus albus HOM05D003237 ORTHO05D003631 1.7e-12 77.0 118 45.8
Sed0018000 Sechium edule HOM05D003237 ORTHO05D003631 2.9e-12 76.3 139 46.0
Potri.004G196400 Populus trichocarpa HOM05D003237 ORTHO05D003631 3.8e-12 75.9 60 65.0
Thhalv10001919m.g Eutrema salsugineum HOM05D003237 ORTHO05D003631 1.1e-11 74.3 95 51.6
TWI31G0528 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 1.5e-11 73.9 198 49.5
arahy.Tifrunner.gnm1.ann1.MWA09F Arachis hypogaea HOM05D003237 ORTHO05D003631 2.5e-11 73.2 115 53.9
Haze_23662 Corylus avellana HOM05D003237 ORTHO05D003631 2.5e-11 73.2 56 64.3
HanXRQChr13g0420901 Helianthus annuus HOM05D003237 ORTHO05D003631 2.5e-11 73.2 149 41.6
Gohir.D08G008600 Gossypium hirsutum HOM05D003237 ORTHO05D003631 3.2e-11 72.8 125 50.4
Potri.009G158600 Populus trichocarpa HOM05D003237 ORTHO05D003631 3.2e-11 72.8 60 61.7
QL01p020379 Quercus lobata HOM05D003237 ORTHO05D003631 3.2e-11 72.8 53 67.9
AL4G20820 Arabidopsis lyrata HOM05D003237 ORTHO05D003631 4.2e-11 72.4 91 52.7
Sed0025717 Sechium edule HOM05D003237 ORTHO05D003631 4.2e-11 72.4 153 40.5
Lalb_Chr19g0132581 Lupinus albus HOM05D003237 ORTHO05D003631 9.4e-11 71.2 131 43.5
CAN.G651.1 Capsicum annuum HOM05D003237 ORTHO05D003631 1.6e-10 70.5 162 38.9
Gohir.A08G196300 Gossypium hirsutum HOM05D003237 ORTHO05D003631 1.6e-10 70.5 56 62.5
Gohir.D08G213400 Gossypium hirsutum HOM05D003237 ORTHO05D003631 1.6e-10 70.5 56 62.5
Gorai.004G227500 Gossypium raimondii HOM05D003237 ORTHO05D003631 1.6e-10 70.5 56 62.5
Hma1.2p1_0218F.1_g092610 Hydrangea macrophylla HOM05D003237 ORTHO05D003631 2.1e-10 70.1 59 62.7
Lj1A274G37 Lonicera japonica HOM05D003237 ORTHO05D003631 2.1e-10 70.1 45 68.9
MD11G1180900 Malus domestica HOM05D003237 ORTHO05D003631 2.7e-10 69.7 117 48.7
Thecc.09G337100 Theobroma cacao HOM05D003237 ORTHO05D003631 4.7e-10 68.9 56 60.7
Gohir.D13G235500 Gossypium hirsutum HOM05D003237 ORTHO05D003631 6.1e-10 68.6 58 60.3
Prupe.6G153800 Prunus persica HOM05D003237 ORTHO05D003631 1.8e-09 67.0 205 43.4
TPR.G25518 Trifolium pratense HOM05D003237 ORTHO05D003631 1.8e-09 67.0 49 63.3
Carub.0004s0762 Capsella rubella HOM05D003237 ORTHO05D003631 4.0e-09 65.9 47 70.2
Gohir.A05G101000 Gossypium hirsutum HOM05D003237 ORTHO05D003631 4.0e-09 65.9 53 62.3
Gohir.D05G100800 Gossypium hirsutum HOM05D003237 ORTHO05D003631 4.0e-09 65.9 53 62.3
Gorai.009G104900 Gossypium raimondii HOM05D003237 ORTHO05D003631 4.0e-09 65.9 53 62.3
Sabra09G0124100 Salix brachista HOM05D003237 ORTHO05D003631 4.0e-09 65.9 56 60.7
THA.LOC104816965 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 4.0e-09 65.9 46 69.6
Ah.08g222820 Amaranthus hybridus HOM05D003237 ORTHO05D003631 8.8e-09 64.7 75 54.7
Duzib168G1536 Durio zibethinus HOM05D003237 ORTHO05D003631 8.8e-09 64.7 128 45.3
Gorai.013G266200 Gossypium raimondii HOM05D003237 ORTHO05D003631 8.8e-09 64.7 117 47.0
Psat5g230400 Pisum sativum HOM05D003237 ORTHO05D003631 8.8e-09 64.7 192 44.8
Cfa010256 Carpinus fangiana HOM05D003237 ORTHO05D003631 1.2e-08 64.3 127 47.2
Rhsim01G0196700 Rhododendron simsii HOM05D003237 ORTHO05D003631 1.2e-08 64.3 203 45.3
Peaxi162Scf00342g00121 Petunia axillaris HOM05D003237 ORTHO05D003631 1.5e-08 63.9 52 63.5
CSS0011655 Camellia sinensis var. sinensis HOM05D003237 ORTHO05D003631 2.0e-08 63.5 197 47.2
Glyma.08G227300 Glycine max HOM05D003237 ORTHO05D003631 2.0e-08 63.5 48 66.7
THA.LOC104801503 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 2.6e-08 63.2 111 45.9
Actinidia22473 Actinidia chinensis HOM05D003237 ORTHO05D003631 3.4e-08 62.8 78 51.3
Lj3g0010266 Lotus japonicus HOM05D003237 ORTHO05D003631 3.4e-08 62.8 187 49.7
COL.COLO4_18368 Corchorus olitorius HOM05D003237 ORTHO05D003631 4.4e-08 62.4 127 46.5
Gohir.A08G000080 Gossypium hirsutum HOM05D003237 ORTHO05D003631 4.4e-08 62.4 53 60.4
Gohir.A13G230000 Gossypium hirsutum HOM05D003237 ORTHO05D003631 5.7e-08 62.0 58 56.9
Sabra04G0133100 Salix brachista HOM05D003237 ORTHO05D003631 5.7e-08 62.0 198 50.5
Actinidia06362 Actinidia chinensis HOM05D003237 ORTHO05D003631 9.8e-08 61.2 78 50.0
TWI79G1622 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 1.3e-07 60.8 193 40.9
Medtr8g043980 Medicago truncatula HOM05D003237 ORTHO05D003631 1.7e-07 60.5 128 43.8
Ah.15g099440 Amaranthus hybridus HOM05D003237 ORTHO05D003631 2.2e-07 60.1 60 56.7
PSO384G0529 Papaver somniferum HOM05D003237 ORTHO05D003631 2.2e-07 60.1 94 45.7
SGA_v2.0_scaffold16G07569 Striga asiatica HOM05D003237 ORTHO05D003631 2.2e-07 60.1 146 46.6
DCAR_002130 Daucus carota HOM05D003237 ORTHO05D003631 6.3e-07 58.5 142 41.5
PGR119G2033 Punica granatum HOM05D003237 ORTHO05D003631 6.3e-07 58.5 188 39.4
PSO339G2307 Papaver somniferum HOM05D003237 ORTHO05D003631 1.1e-06 57.8 94 44.7
ATR0618G315 Amborella trichopoda HOM05D003237 ORTHO05D003631 1.4e-06 57.4 133 42.9
CARHR119470 Cardamine hirsuta HOM05D003237 ORTHO05D003631 5.4e-06 55.5 32 75.0
Duzib150G1090 Durio zibethinus HOM05D003237 ORTHO05D003631 5.4e-06 55.5 56 51.8
AUR62001612 Chenopodium quinoa HOM05D003237 ORTHO05D003631 9.1e-06 54.7 44 56.8
Sp4g09770 Schrenkiella parvula HOM05D003237 ORTHO05D003631 9.1e-06 54.7 41 68.3
SpUn0012_0060 Schrenkiella parvula HOM05D003237 ORTHO05D003631 9.1e-06 54.7 41 68.3


User provided reference genes

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