Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-35 151.8 76 100.0
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 3.1e-29 131.3 76 88.2
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 8.9e-29 129.8 76 89.5
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 9.8e-28 126.3 76 84.2
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 6.4e-27 123.6 76 82.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.9e-26 122.1 76 85.5
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.9e-26 122.1 76 82.9
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.4e-26 121.7 76 81.6
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 2.4e-26 121.7 76 82.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 3.2e-26 121.3 76 80.3
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 4.1e-26 120.9 75 84.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 7.0e-26 120.2 76 80.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 9.2e-26 119.8 76 80.3
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.2e-25 119.4 75 81.3
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.2e-25 119.4 75 81.3
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.2e-25 119.4 75 81.3
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.2e-25 119.4 75 82.7
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.6e-25 119.0 75 81.3
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.6e-25 119.0 76 77.6
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 2.7e-25 118.2 75 80.0
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.7e-25 118.2 75 82.7
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 2.7e-25 118.2 76 78.9
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 3.5e-25 117.9 75 81.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.5e-25 117.9 76 78.9
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 6.0e-25 117.1 75 78.7
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 7.8e-25 116.7 75 80.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 7.8e-25 116.7 75 77.3
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 7.8e-25 116.7 75 77.3
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.0e-24 116.3 77 79.2
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.0e-24 116.3 75 81.3
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.3e-24 115.9 70 87.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.3e-24 115.9 76 76.3
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.7e-24 115.5 72 84.7
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.7e-24 115.5 72 84.7
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.7e-24 115.5 72 84.7
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.7e-24 115.5 76 77.6
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.7e-24 115.5 76 75.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.3e-24 115.2 76 77.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 2.3e-24 115.2 75 78.7
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 77.6
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 77.6
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 75.0
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 75.0
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 75.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 75.0
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-24 114.4 76 75.0
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 5.0e-24 114.0 76 76.3
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 6.6e-24 113.6 75 76.0
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.6e-24 113.6 76 76.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 6.6e-24 113.6 76 75.0
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 8.6e-24 113.2 84 73.8
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 8.6e-24 113.2 76 73.7
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 1.1e-23 112.8 77 76.6
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.1e-23 112.8 77 76.6
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.1e-23 112.8 75 78.7
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.1e-23 112.8 80 76.2
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.1e-23 112.8 76 75.0
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.5e-23 112.5 72 83.3
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.5e-23 112.5 72 83.3
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.5e-23 112.5 75 77.3
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.9e-23 112.1 76 75.0
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.9e-23 112.1 75 78.7
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.9e-23 112.1 75 76.0
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.9e-23 112.1 68 83.8
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.5e-23 111.7 76 73.7
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.3e-23 111.3 75 74.7
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.6e-23 110.5 74 74.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 5.6e-23 110.5 74 75.7
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 7.3e-23 110.2 76 76.3
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 7.3e-23 110.2 74 74.3
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 7.3e-23 110.2 74 73.0
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 7.3e-23 110.2 71 77.5
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.1e-22 108.6 77 71.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.8e-22 108.2 77 71.4
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 2.8e-22 108.2 77 71.4
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 2.8e-22 108.2 76 69.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.8e-22 108.2 75 76.0
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 2.8e-22 108.2 74 73.0
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.6e-22 107.8 75 74.7
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 3.6e-22 107.8 74 74.3
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 6.2e-22 107.1 75 76.0
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 2.3e-21 105.1 75 70.7
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.3e-21 105.1 73 76.7
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 4.0e-21 104.4 73 72.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 4.0e-21 104.4 92 65.2
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 6.8e-21 103.6 73 71.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.4e-20 101.3 68 76.5
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.4e-20 101.3 68 76.5
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 3.4e-20 101.3 79 65.8
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.4e-20 100.9 76 64.5
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 7.5e-20 100.1 76 67.1
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 7.5e-20 100.1 76 67.1
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.9e-19 98.2 74 70.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.9e-19 98.2 70 72.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.9e-18 95.5 104 52.9
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 3.2e-18 94.7 73 65.8
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.4e-18 94.0 76 60.5
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.6e-17 92.4 76 61.8
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 3.5e-17 91.3 76 60.5
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 4.6e-17 90.9 59 72.9
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.7e-16 89.0 50 88.0
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.6e-14 81.3 60 65.0
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 6.2e-14 80.5 49 81.6
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 8.1e-14 80.1 49 79.6
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.1e-14 80.1 66 59.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.8e-13 79.0 51 74.5
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.1e-13 78.2 49 77.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 5.2e-13 77.4 49 77.6
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.8e-13 77.0 68 55.9
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 4.4e-12 74.3 68 55.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 2.9e-11 71.6 63 55.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.2e-09 66.2 50 72.0
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 4.3e-07 57.8 36 80.6
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 4.3e-07 57.8 36 77.8
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-06 56.2 36 75.0


User provided reference genes

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