Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.4e-113 413.3 256 100.0
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 5.7e-104 381.3 217 93.5
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 2.4e-102 375.9 217 90.3
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 5.3e-102 374.8 214 93.0
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 7.0e-102 374.4 226 89.4
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.7e-100 369.8 213 90.6
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.7e-100 369.8 215 88.8
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.2e-100 369.4 212 91.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.8e-100 368.6 209 91.9
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 3.8e-100 368.6 217 88.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.8e-100 368.6 217 88.5
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 5.0e-100 368.2 216 89.8
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 6.5e-100 367.9 217 89.4
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 6.5e-100 367.9 215 89.8
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.1e-99 367.1 217 90.3
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.5e-99 366.7 221 88.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.5e-99 364.8 214 89.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 7.2e-99 364.4 211 89.6
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 6.1e-98 361.3 217 87.1
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.0e-97 360.5 215 88.4
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.0e-97 360.5 213 88.3
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 2.3e-97 359.4 209 90.0
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.0e-97 359.0 213 88.3
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 3.0e-97 359.0 210 89.0
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 3.0e-97 359.0 209 90.0
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 4.0e-97 358.6 215 87.0
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 8.8e-97 357.5 208 89.9
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 8.8e-97 357.5 212 88.2
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 8.8e-97 357.5 217 85.3
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.2e-96 357.1 217 86.6
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.6e-96 355.9 212 88.7
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.6e-96 355.9 212 88.2
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 2.6e-96 355.9 217 86.6
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.6e-96 355.9 211 87.7
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 4.4e-96 355.1 217 86.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 5.7e-96 354.8 208 88.5
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 9.8e-96 354.0 212 87.7
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.3e-95 353.6 212 88.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.7e-95 353.2 212 88.2
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.7e-95 353.2 212 88.2
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.7e-95 353.2 209 88.0
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.8e-95 352.4 218 86.7
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.8e-95 352.4 206 87.9
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.7e-95 352.1 206 89.3
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 4.8e-95 351.7 213 87.3
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.3e-95 351.3 213 88.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 6.3e-95 351.3 217 86.6
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.3e-95 350.9 215 83.7
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-94 350.5 215 83.7
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-94 350.5 215 83.7
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-94 350.5 215 83.7
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.1e-94 350.5 214 86.4
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.4e-94 350.1 213 86.4
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.8e-94 349.7 219 85.4
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.4e-94 349.4 218 86.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.4e-94 349.4 218 86.2
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.4e-94 349.4 214 84.1
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.1e-94 349.0 209 88.5
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.1e-94 349.0 209 88.5
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.4e-94 348.2 209 88.5
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 5.4e-94 348.2 212 84.4
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.2e-93 347.1 211 85.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.2e-93 347.1 210 86.2
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.6e-93 346.7 213 85.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-93 346.7 215 82.8
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.6e-93 346.7 211 85.3
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.0e-93 346.3 214 85.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.7e-93 345.9 214 86.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 4.5e-93 345.1 207 87.4
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.0e-92 344.0 214 83.6
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.0e-92 344.0 212 86.8
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.3e-92 343.6 210 85.7
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.3e-92 343.6 221 83.7
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.7e-92 343.2 219 83.1
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.9e-92 342.4 206 85.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 5.0e-92 341.7 217 80.6
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 8.6e-92 340.9 206 86.4
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.5e-91 340.1 206 85.4
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.9e-91 339.7 207 85.0
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 5.2e-89 331.6 217 79.7
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 3.4e-88 328.9 193 87.6
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 7.5e-88 327.8 195 87.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.7e-87 326.6 251 72.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 8.3e-87 324.3 202 84.2
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 9.2e-86 320.9 208 80.3
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.2e-85 320.5 208 80.3
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 3.8e-84 315.5 215 74.9
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.5e-83 313.5 214 77.1
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.3e-83 312.0 215 73.5
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 9.5e-83 310.8 207 78.3
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 2.8e-82 309.3 185 88.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.0e-81 307.4 189 85.2
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 6.8e-81 304.7 187 84.5
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.7e-79 300.1 185 84.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.2e-79 299.7 185 84.3
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 3.5e-77 292.4 217 69.6
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 7.3e-75 284.6 224 71.9
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.7e-71 272.3 190 73.2
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 7.0e-70 268.1 204 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.2e-69 267.3 205 64.9
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.6e-69 265.4 198 72.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.7e-68 263.5 204 65.7
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 1.1e-65 254.2 155 87.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.4e-64 249.2 188 72.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 8.3e-63 244.6 178 75.8
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.2e-62 242.7 169 77.5
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.4e-54 216.5 195 61.5
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.0e-44 183.0 153 60.8
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 8.7e-36 154.8 93 86.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 6.2e-34 148.7 114 64.9
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-31 140.2 79 91.1
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.9e-31 139.8 103 77.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 6.7e-28 128.6 76 89.5
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 7.4e-27 125.2 180 43.3
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 9.0e-25 118.2 74 79.7
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 9.0e-25 118.2 82 78.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-24 117.1 64 95.3
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 7.6e-24 115.2 207 36.2
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.1e-19 101.3 62 79.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-19 99.8 56 89.3
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 4.3e-19 99.4 180 38.9
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.3e-18 97.8 107 50.5
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.2e-18 97.1 63 79.4
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.8e-17 94.0 56 80.4
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.4e-17 93.6 72 68.1
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 2.4e-17 93.6 168 38.1
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.2e-15 87.0 95 47.4
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.2e-15 87.0 95 47.4
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.9e-14 84.0 159 38.4
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.6e-13 80.9 69 60.9
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.1e-09 68.2 63 61.9
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 6.9e-09 65.5 36 86.1
QL04p035096 Quercus lobata HOM05D005846 ORTHO05D007369 4.5e-08 62.8 31 96.8
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 7.7e-08 62.0 52 61.5
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 4.2e-06 56.2 155 25.2


User provided reference genes

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