Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 4.4e-71 271.2 135 100.0
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.2e-65 253.1 135 93.3
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.2e-65 253.1 135 92.6
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.6e-65 252.7 135 92.6
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.6e-65 252.7 135 92.6
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.6e-65 252.7 135 92.6
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.1e-65 252.3 135 92.6
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.1e-65 252.3 135 91.1
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 2.8e-65 251.9 135 92.6
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 2.8e-65 251.9 135 92.6
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.8e-65 251.9 135 92.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.6e-65 251.5 135 91.9
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.1e-65 250.8 135 91.9
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 6.1e-65 250.8 135 90.4
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 8.0e-65 250.4 135 92.6
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.0e-64 250.0 135 91.1
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.4e-64 249.6 135 90.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 1.8e-64 249.2 135 91.1
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 2.3e-64 248.8 131 92.4
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 4.0e-64 248.1 135 91.1
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 5.2e-64 247.7 135 89.6
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 8.9e-64 246.9 129 93.8
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.0e-63 245.7 130 93.8
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 2.6e-63 245.4 129 92.2
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-63 245.0 135 88.9
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 4.4e-63 244.6 135 89.6
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.7e-63 244.2 135 91.1
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 5.7e-63 244.2 135 91.1
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.7e-63 244.2 129 92.2
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 5.7e-63 244.2 129 92.2
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 5.7e-63 244.2 129 91.5
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 7.5e-63 243.8 135 88.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 7.5e-63 243.8 135 88.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 7.5e-63 243.8 135 88.1
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.7e-62 242.7 135 87.4
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 135 89.6
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 2.9e-62 241.9 135 87.4
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.7e-62 241.5 135 87.4
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 3.7e-62 241.5 135 88.9
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.9e-62 241.1 129 91.5
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 4.9e-62 241.1 132 90.2
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 6.4e-62 240.7 129 90.7
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 8.3e-62 240.4 135 87.4
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 8.3e-62 240.4 128 91.4
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.1e-61 240.0 129 89.9
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.8e-61 239.2 129 89.9
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.8e-61 239.2 128 89.8
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.2e-61 238.4 128 91.4
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.2e-61 238.4 129 89.9
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 3.2e-61 238.4 135 87.4
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 4.1e-61 238.0 128 90.6
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.1e-61 238.0 128 90.6
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.1e-61 238.0 128 90.6
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 4.1e-61 238.0 128 92.2
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 4.1e-61 238.0 128 90.6
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 4.1e-61 238.0 128 90.6
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 5.4e-61 237.7 135 86.7
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 5.4e-61 237.7 135 85.2
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 5.4e-61 237.7 128 91.4
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 7.0e-61 237.3 128 91.4
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-61 236.9 128 89.8
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 1.2e-60 236.5 135 85.9
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-60 236.5 127 90.6
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.2e-60 236.5 135 87.4
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.6e-60 236.1 129 89.1
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 2.0e-60 235.7 129 89.9
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.0e-60 235.7 135 86.7
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 4.6e-60 234.6 128 89.1
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.6e-60 234.6 128 89.8
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 4.6e-60 234.6 135 85.9
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 4.6e-60 234.6 135 85.9
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 5.9e-60 234.2 135 83.7
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 5.9e-60 234.2 135 85.9
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 7.8e-60 233.8 137 86.1
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.3e-59 233.0 135 85.9
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.7e-59 232.6 135 83.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.7e-59 232.6 135 85.2
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.7e-59 232.6 135 85.2
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.3e-59 232.3 137 85.4
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 3.0e-59 231.9 135 83.0
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 3.0e-59 231.9 135 85.2
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.0e-59 231.9 135 84.4
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 85.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 3.9e-59 231.5 131 87.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 8.6e-59 230.3 129 86.8
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.5e-58 229.6 135 85.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 4.3e-58 228.0 126 88.1
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 9.5e-58 226.9 135 82.2
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.6e-57 226.1 135 82.2
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 2.1e-57 225.7 135 83.0
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-57 225.3 131 84.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.8e-57 225.3 131 84.0
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.8e-56 222.6 152 75.7
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.5e-55 219.5 135 80.0
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 9.8e-55 216.9 127 81.9
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.7e-54 216.1 167 69.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.7e-54 216.1 135 77.8
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.9e-54 214.5 167 68.9
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 3.2e-53 211.8 181 63.5
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 5.4e-53 211.1 124 82.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-51 206.5 135 76.3
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 1.7e-51 206.1 199 56.8
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 2.3e-51 205.7 136 80.1
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 6.6e-51 204.1 131 77.1
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.5e-50 202.2 135 73.3
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 5.6e-50 201.1 135 73.3
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 6.2e-49 197.6 135 77.0
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.2e-47 193.4 131 67.2
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.5e-47 193.0 103 88.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 7.5e-47 190.7 129 67.4
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 3.7e-46 188.3 131 71.0
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.4e-45 185.7 128 75.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 4.6e-44 181.4 122 69.7
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.3e-43 179.1 143 71.3
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 9.5e-42 173.7 126 73.0
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.4e-40 169.9 129 62.8
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 3.4e-39 165.2 110 72.7
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.2e-37 158.7 97 80.4
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 3.5e-36 155.2 93 84.9
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 6.6e-35 151.0 85 89.4
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.1e-34 150.2 84 89.3
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.5e-34 149.8 78 88.5
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.5e-34 149.8 85 87.1
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.1e-33 144.1 92 78.3
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-32 143.7 79 83.5
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.0e-32 141.7 90 78.9
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 4.0e-32 141.7 133 62.4
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 6.9e-32 141.0 87 81.6
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 6.9e-32 141.0 85 82.4
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.5e-31 139.8 87 80.5
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.5e-31 139.8 87 80.5
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.6e-31 139.0 79 82.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 7.1e-29 131.0 105 68.6
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 7.1e-29 131.0 70 87.1
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-28 129.4 74 81.1
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.0e-27 127.1 85 77.6
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.6e-27 124.4 88 75.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-26 123.6 67 85.1
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.3e-22 110.2 64 79.7
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.2e-20 103.6 91 59.3
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.3e-19 100.1 91 60.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.3e-18 95.5 91 57.1
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 1.8e-16 89.7 45 86.7
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.3e-16 88.2 45 86.7
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 4.2e-13 78.6 60 71.7
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.6e-09 66.6 41 78.0
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 6.2e-09 64.7 41 70.7
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.0e-08 62.0 57 59.6


User provided reference genes

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