Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 2251.9 1171 100.0
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 4.4e-252 875.5 623 78.8
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 7.8e-241 838.2 602 78.2
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 3.1e-221 773.1 623 69.2
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 4.5e-220 769.2 623 68.7
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 4.9e-219 765.8 623 68.9
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 4.6e-209 732.6 623 64.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 3.9e-208 729.6 623 64.0
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 1.5e-207 727.6 646 63.0
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 3.3e-207 726.5 619 64.3
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 1.4e-205 721.1 642 61.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 1.8e-205 720.7 642 60.9
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 5.3e-205 719.2 642 61.1
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 3.4e-204 716.5 742 58.0
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 4.5e-204 716.1 647 62.3
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 5.8e-204 715.7 623 62.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 2.2e-203 713.8 646 60.7
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 2.5e-202 710.3 689 59.4
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 2.5e-202 710.3 635 62.2
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 2.7e-201 706.8 619 62.2
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 7.9e-201 705.3 640 61.7
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 3.9e-200 703.0 623 61.8
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 1.5e-199 701.0 623 61.8
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.3e-199 699.5 622 62.1
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 1.3e-198 698.0 619 61.6
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 2.2e-198 697.2 631 61.5
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 2.8e-198 696.8 619 61.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 4.1e-197 693.0 629 61.4
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 6.9e-197 692.2 635 60.6
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.2e-196 691.4 613 62.2
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 2.0e-196 690.6 635 60.9
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 1.9e-194 684.1 623 60.5
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 3.2e-194 683.3 729 56.2
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 4.2e-194 682.9 610 64.3
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 9.4e-194 681.8 623 60.7
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 2.7e-193 680.2 619 61.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 2.7e-193 680.2 619 61.6
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 7.9e-193 678.7 641 59.1
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.9e-192 676.4 636 58.8
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 5.1e-192 676.0 623 59.1
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 8.8e-192 675.2 677 56.3
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 8.8e-192 675.2 619 59.6
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.5e-191 674.5 626 59.9
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 3.3e-191 673.3 623 59.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 2.2e-190 670.6 697 56.0
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 6.3e-190 669.1 623 58.7
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 8.2e-190 668.7 445 76.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 1.4e-189 667.9 623 59.1
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 1.8e-189 667.5 623 58.7
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 4.1e-189 666.4 636 57.9
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 1.5e-188 664.5 646 57.3
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 3.4e-188 663.3 646 57.1
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 4.5e-188 662.9 639 56.8
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 4.5e-188 662.9 629 58.3
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 1.3e-187 661.4 785 51.8
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 1.7e-187 661.0 635 58.0
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 8.5e-187 658.7 619 59.3
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 9.4e-186 655.2 632 58.1
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 1.6e-185 654.4 619 58.6
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 2.1e-185 654.1 619 56.5
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 2.7e-185 653.7 621 58.8
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 3.6e-185 653.3 619 56.7
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 3.6e-185 653.3 619 56.4
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.8e-184 651.0 621 58.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 1.5e-183 647.9 619 56.1
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 2.6e-183 647.1 631 56.4
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 1.3e-182 644.8 635 57.5
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 4.8e-182 642.9 630 57.8
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 4.5e-180 636.3 622 56.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 3.8e-179 633.3 622 56.1
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 8.5e-179 632.1 621 56.0
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 1.4e-178 631.3 413 80.9
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 1.9e-178 630.9 620 56.1
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.1e-173 615.1 646 53.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 1.2e-169 601.7 647 53.8
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 2.7e-169 600.5 726 50.0
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 8.0e-169 599.0 664 52.9
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 1.2e-164 585.1 647 51.5
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 3.5e-164 583.6 672 52.7
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 1.9e-162 577.8 623 54.1
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 4.7e-161 573.2 633 51.2
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 5.7e-159 566.2 647 49.3
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 1.8e-157 561.2 643 48.7
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 7.5e-151 539.3 425 65.6
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 3.1e-149 533.9 649 49.2
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 4.4e-143 513.5 609 48.8
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 4.4e-143 513.5 694 46.1
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 3.2e-141 507.3 330 77.6
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.1e-141 506.9 572 51.2
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 4.3e-138 496.9 498 56.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 8.3e-134 482.6 379 68.9
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 1.9e-133 481.5 701 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 2.7e-132 477.6 638 43.9
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 1.2e-129 468.8 638 44.2
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 4.9e-126 456.8 490 53.5
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 2.0e-119 434.9 457 49.5
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 1.3e-105 389.0 443 48.3
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 4.8e-105 387.1 456 46.5
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.0e-103 381.7 464 51.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.5e-98 365.5 456 46.5
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.8e-97 361.3 423 50.4
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 7.6e-95 353.2 234 76.5
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 8.2e-89 333.2 372 53.0
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.3e-74 284.3 179 81.0
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.6e-66 258.5 356 46.6
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.2e-57 228.8 187 64.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 9.1e-48 196.8 148 65.5
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.6e-44 184.9 150 60.7
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 5.2e-43 181.0 134 67.9
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 7.0e-40 170.6 112 75.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.6e-34 152.1 172 50.6
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 2.6e-34 152.1 100 74.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.5e-34 150.6 106 72.6
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 8.6e-30 137.1 96 71.9
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 8.0e-28 130.6 120 59.2
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.0e-26 125.9 92 63.0
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 2.2e-25 122.5 139 54.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-24 120.2 228 36.8
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.1e-19 102.1 207 34.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.3e-17 96.7 67 65.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.7e-17 95.1 77 67.5
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.2e-15 90.1 56 73.2
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.2e-12 80.1 66 60.6
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.2e-12 80.1 56 66.1
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 8.1e-12 77.4 80 57.5
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 8.9e-11 73.9 51 66.7
QL02p071567 Quercus lobata HOM05D000147 ORTHO05D007818 1.3e-09 70.1 93 43.0
QL02p055842 Quercus lobata HOM05D002000 ORTHO05D002027 1.1e-08 67.0 86 41.9
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 4.1e-08 65.1 47 61.7
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 5.4e-08 64.7 44 65.9
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 5.4e-08 64.7 44 65.9
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.4e-08 64.7 44 65.9
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 9.2e-08 63.9 44 65.9
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.6e-07 63.2 43 67.4
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 3.5e-07 62.0 43 65.1
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 6.0e-07 61.2 63 54.0
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 7.8e-07 60.8 44 61.4
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.7e-06 59.7 37 73.0


User provided reference genes

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