Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p019162 Quercus lobata HOM05D002300 ORTHO05D002340 7.3e-125 450.7 245 100.0
QL09p003504 Quercus lobata HOM05D002300 ORTHO05D002340 6.8e-46 188.3 127 77.2
QL07p028356 Quercus lobata HOM05D002300 ORTHO05D002340 2.6e-45 186.4 127 76.4
QL10p050788 Quercus lobata HOM05D002300 ORTHO05D002340 1.9e-40 170.2 96 89.6
QL04p067209 Quercus lobata HOM05D002300 ORTHO05D002340 1.2e-39 167.5 121 75.2
QL04p092107 Quercus lobata HOM05D000009 ORTHO05D000008 8.0e-39 164.9 98 85.7
Cfa015194 Carpinus fangiana HOM05D002300 ORTHO05D002340 5.2e-30 135.6 96 76.0
Haze_01461 Corylus avellana HOM05D002300 ORTHO05D002340 2.6e-29 133.3 96 75.0
CiPaw.01G096200 Carya illinoinensis HOM05D002300 ORTHO05D002340 1.9e-27 127.1 90 74.4
CiPaw.02G052000 Carya illinoinensis HOM05D002300 ORTHO05D002340 1.3e-25 120.9 96 68.8
CANSAT78G0002 Cannabis sativa HOM05D002300 ORTHO05D002340 3.9e-25 119.4 74 81.1
MD13G1271200 Malus domestica HOM05D002300 ORTHO05D002340 3.9e-25 119.4 88 69.3
MD04G1045000 Malus domestica HOM05D002300 ORTHO05D002340 8.6e-25 118.2 75 77.3
TPR.G34226 Trifolium pratense HOM05D002300 ORTHO05D002340 7.3e-24 115.2 76 76.3
Prupe.1G197900 Prunus persica HOM05D002300 ORTHO05D002340 9.5e-24 114.8 75 74.7
COL.COLO4_10090 Corchorus olitorius HOM05D002300 ORTHO05D002340 1.2e-23 114.4 88 63.6
Phvul.011G053300 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 2.1e-23 113.6 140 51.4
Ca_20799_v3 Cicer arietinum L. HOM05D002300 ORTHO05D002340 2.8e-23 113.2 92 65.2
TAR362G0143 Trochodendron aralioides HOM05D002300 ORTHO05D002340 1.1e-22 111.3 98 56.1
Atru.chr4.1262 Acer truncatum HOM05D002300 ORTHO05D002340 1.4e-22 110.9 96 61.5
Glyma.12G051000 Glycine max HOM05D002300 ORTHO05D002340 1.4e-22 110.9 82 67.1
Glyma.11G126400 Glycine max HOM05D002300 ORTHO05D002340 1.8e-22 110.5 88 65.9
Lj3g0017734 Lotus japonicus HOM05D002300 ORTHO05D002340 1.8e-22 110.5 96 61.5
Psat7g209640 Pisum sativum HOM05D002300 ORTHO05D002340 1.8e-22 110.5 96 64.6
Gorai.011G139200 Gossypium raimondii HOM05D002300 ORTHO05D002340 3.1e-22 109.8 80 66.2
Gohir.A10G140500 Gossypium hirsutum HOM05D002300 ORTHO05D002340 4.0e-22 109.4 96 59.4
Gohir.D10G126300 Gossypium hirsutum HOM05D002300 ORTHO05D002340 6.8e-22 108.6 80 65.0
Dinv05078 Davidia involucrata HOM05D002300 ORTHO05D002340 1.2e-21 107.8 98 57.1
Thecc.04G175200 Theobroma cacao HOM05D002300 ORTHO05D002340 1.2e-21 107.8 83 63.9
VMungo1127G0975 Vigna mungo HOM05D002300 ORTHO05D002340 1.2e-21 107.8 88 62.5
Duzib268G0577 Durio zibethinus HOM05D002300 ORTHO05D002340 1.5e-21 107.5 88 59.1
Nn1g09701 Nelumbo nucifera HOM05D002300 ORTHO05D002340 2.6e-21 106.7 98 54.1
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 3.4e-21 106.3 96 62.5
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 3.4e-21 106.3 96 62.5
ClCG06G000960 Citrullus lanatus HOM05D002300 ORTHO05D002340 9.9e-21 104.8 76 68.4
Duzib151G0795 Durio zibethinus HOM05D002300 ORTHO05D002340 1.7e-20 104.0 83 60.2
Lalb_Chr01g0003091 Lupinus albus HOM05D002300 ORTHO05D002340 2.9e-20 103.2 84 66.7
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 6.4e-20 102.1 96 57.3
Gohir.A02G011500 Gossypium hirsutum HOM05D002300 ORTHO05D002340 8.4e-20 101.7 83 60.2
Gohir.D02G012300 Gossypium hirsutum HOM05D002300 ORTHO05D002340 8.4e-20 101.7 83 60.2
Gorai.005G015700 Gossypium raimondii HOM05D002300 ORTHO05D002340 8.4e-20 101.7 83 60.2
Nn7g37589 Nelumbo nucifera HOM05D002300 ORTHO05D002340 8.4e-20 101.7 99 50.5
Potri.017G026600 Populus trichocarpa HOM05D002300 ORTHO05D002340 8.4e-20 101.7 96 56.2
Dinv44155 Davidia involucrata HOM05D002300 ORTHO05D002340 1.4e-19 100.9 75 62.7
Manes.04G039300 Manihot esculenta HOM05D002300 ORTHO05D002340 1.4e-19 100.9 74 64.9
RcHm_v2.0_Chr1g0330861 Rosa chinensis HOM05D002300 ORTHO05D002340 1.4e-19 100.9 83 63.9
Sabra17G0016300 Salix brachista HOM05D002300 ORTHO05D002340 1.4e-19 100.9 96 55.2
Sed0001804 Sechium edule HOM05D002300 ORTHO05D002340 2.4e-19 100.1 96 57.3
FvH4_7g04880 Fragaria vesca HOM05D002300 ORTHO05D002340 3.2e-19 99.8 83 63.9
FAN01G0141 Fragaria x ananassa HOM05D002300 ORTHO05D002340 3.2e-19 99.8 83 63.9
FAN03G0795 Fragaria x ananassa HOM05D002300 ORTHO05D002340 3.2e-19 99.8 83 63.9
FAN06G4459 Fragaria x ananassa HOM05D002300 ORTHO05D002340 3.2e-19 99.8 83 63.9
FAN10G2998 Fragaria x ananassa HOM05D002300 ORTHO05D002340 3.2e-19 99.8 83 63.9
Sed0027019 Sechium edule HOM05D002300 ORTHO05D002340 4.1e-19 99.4 96 54.2
Ciclev10018733m.g Citrus clementina HOM05D002300 ORTHO05D002340 7.1e-19 98.6 87 56.3
Actinidia11294 Actinidia chinensis HOM05D002300 ORTHO05D002340 1.2e-18 97.8 75 61.3
Actinidia26503 Actinidia chinensis HOM05D002300 ORTHO05D002340 2.1e-18 97.1 75 61.3
MELO3C022443.2 Cucumis melo HOM05D002300 ORTHO05D002340 2.1e-18 97.1 76 63.2
CsaV3_6G006810 Cucumis sativus L. HOM05D002300 ORTHO05D002340 2.1e-18 97.1 76 63.2
Potri.007G131100 Populus trichocarpa HOM05D002300 ORTHO05D002340 2.7e-18 96.7 88 54.5
arahy.Tifrunner.gnm1.ann1.7M81U3 Arachis hypogaea HOM05D002300 ORTHO05D002340 4.6e-18 95.9 86 64.0
MBI11_g10482_MAGBIO Magnolia biondii HOM05D002300 ORTHO05D002340 4.6e-18 95.9 98 51.0
CSS0012722 Camellia sinensis var. sinensis HOM05D002300 ORTHO05D002340 1.0e-17 94.7 85 56.5
QL04p000907 Quercus lobata HOM05D002300 ORTHO05D002340 3.9e-17 92.8 70 70.0
Hund03175 Selenicereus undatus HOM05D002300 ORTHO05D002340 3.9e-17 92.8 92 51.1
VMungo1080G1168 Vigna mungo HOM05D002300 ORTHO05D002340 6.6e-17 92.0 76 60.5
PSO675G3071 Papaver somniferum HOM05D002300 ORTHO05D002340 8.7e-17 91.7 96 51.0
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 1.1e-16 91.3 96 49.0
THA.LOC104803786 Tarenaya hassleriana HOM05D002300 ORTHO05D002340 1.5e-16 90.9 73 57.5
Glyma.15G029000 Glycine max HOM05D002300 ORTHO05D002340 1.9e-16 90.5 96 53.1
Lj6C104T10 Lonicera japonica HOM05D002300 ORTHO05D002340 2.5e-16 90.1 69 65.2
PSO017G2971 Papaver somniferum HOM05D002300 ORTHO05D002340 3.3e-16 89.7 96 50.0
Eucgr.A00103 Eucalyptus grandis HOM05D002300 ORTHO05D002340 4.3e-16 89.4 99 50.5
Lj3A34T42 Lonicera japonica HOM05D002300 ORTHO05D002340 5.6e-16 89.0 75 57.3
Rhsim02G0082400 Rhododendron simsii HOM05D002300 ORTHO05D002340 5.6e-16 89.0 88 50.0
CAN.G540.6 Capsicum annuum HOM05D002300 ORTHO05D002340 7.3e-16 88.6 71 59.2
Peaxi162Scf00180g00216 Petunia axillaris HOM05D002300 ORTHO05D002340 7.3e-16 88.6 72 56.9
Aa31LG10G13870 Aethionema arabicum HOM05D002300 ORTHO05D002340 9.6e-16 88.2 77 54.5
Lj6A86G18 Lonicera japonica HOM05D002300 ORTHO05D002340 9.6e-16 88.2 69 63.8
CARHR169930 Cardamine hirsuta HOM05D002300 ORTHO05D002340 1.6e-15 87.4 83 53.0
Solyc06g053320.4 Solanum lycopersicum HOM05D002300 ORTHO05D002340 1.6e-15 87.4 71 56.3
Sopen06g018380 Solanum pennellii HOM05D002300 ORTHO05D002340 1.6e-15 87.4 71 56.3
CARHR138500 Cardamine hirsuta HOM05D002300 ORTHO05D002340 2.8e-15 86.7 74 52.7
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 3.6e-15 86.3 88 47.7
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 4.7e-15 85.9 88 48.9
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 4.7e-15 85.9 71 56.3
Glyma.13G345300 Glycine max HOM05D002300 ORTHO05D002340 6.2e-15 85.5 76 55.3
Oeu064767.2 Olea europaea HOM05D002300 ORTHO05D002340 6.2e-15 85.5 97 46.4
Aa31LG1G25160 Aethionema arabicum HOM05D002300 ORTHO05D002340 8.1e-15 85.1 88 47.7
Phvul.005G154000 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 8.1e-15 85.1 96 50.0
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 1.1e-14 84.7 88 47.7
SGA_v2.0_scaffold12G06172 Striga asiatica HOM05D002300 ORTHO05D002340 1.1e-14 84.7 96 42.7
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 1.4e-14 84.3 75 56.0
Aqoxy2G04157 Aquilegia oxysepala HOM05D002300 ORTHO05D002340 1.4e-14 84.3 100 42.0
AL5G41460 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 1.8e-14 84.0 68 52.9
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 1.8e-14 84.0 88 46.6
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 1.8e-14 84.0 83 50.6
Carub.0004s2588 Capsella rubella HOM05D002300 ORTHO05D002340 1.8e-14 84.0 88 46.6
Cpa.g.sc9.316 Carica papaya HOM05D002300 ORTHO05D002340 1.8e-14 84.0 74 56.8
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 2.4e-14 83.6 95 45.3
BolC4t22079H Brassica oleracea HOM05D002042 ORTHO05D002340 2.4e-14 83.6 95 45.3
PGSC0003DMG400041741 Solanum tuberosum HOM05D002300 ORTHO05D002340 3.1e-14 83.2 71 52.1
A05p03760 Brassica napus HOM05D002300 ORTHO05D002340 4.0e-14 82.8 93 45.2
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 4.0e-14 82.8 83 50.6
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 4.0e-14 82.8 83 50.6
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 5.2e-14 82.4 83 50.6
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 5.2e-14 82.4 83 50.6
SEGI_23247 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 5.2e-14 82.4 86 48.8
Sp5g03620 Schrenkiella parvula HOM05D002300 ORTHO05D002340 6.9e-14 82.0 83 49.4
Rhsim09G0022500 Rhododendron simsii HOM05D002300 ORTHO05D002340 1.2e-13 81.3 76 60.5
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 1.5e-13 80.9 72 48.6
PGR083G0540 Punica granatum HOM05D002300 ORTHO05D002340 2.6e-13 80.1 97 50.5
EL10Ac3g06011 Beta vulgaris HOM05D002300 ORTHO05D002340 4.4e-13 79.3 86 50.0
Oeu034445.2 Olea europaea HOM05D002300 ORTHO05D002340 4.4e-13 79.3 76 48.7
Lsat_1_v5_gn_2_38600 Lactuca sativa HOM05D002300 ORTHO05D002340 5.8e-13 79.0 97 49.5
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 7.6e-13 78.6 75 49.3
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 9.9e-13 78.2 75 48.0
MSTRG.9753 Avicennia marina HOM05D002300 ORTHO05D002340 2.9e-12 76.6 76 48.7
Actinidia34581 Actinidia chinensis HOM05D002300 ORTHO05D002340 3.8e-12 76.3 71 56.3
Sc19g0002840 Simmondsia chinensis HOM05D002300 ORTHO05D002340 3.8e-12 76.3 75 48.0
Migut.G01324 Erythranthe guttata HOM05D002300 ORTHO05D002340 8.4e-12 75.1 96 42.7
GSVIVG01010842001 Vitis vinifera HOM05D002300 ORTHO05D002340 8.4e-12 75.1 76 48.7
ECA248G2483 Erigeron canadensis HOM05D002300 ORTHO05D002340 1.1e-11 74.7 68 51.5
HPP92_007602 Vanilla planifolia HOM05D002300 ORTHO05D002340 1.9e-11 73.9 69 52.2
SHI29128 Sapria himalayana HOM05D002300 ORTHO05D002340 2.4e-11 73.6 73 52.1
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 3.2e-11 73.2 96 42.7
MELO3C013465.2 Cucumis melo HOM05D002300 ORTHO05D002340 5.4e-11 72.4 77 51.9
Sopen06g008320 Solanum pennellii HOM05D002300 ORTHO05D002340 5.4e-11 72.4 71 46.5
HanXRQChr11g0327451 Helianthus annuus HOM05D002300 ORTHO05D002340 9.3e-11 71.6 96 45.8
ECA238G4764 Erigeron canadensis HOM05D002300 ORTHO05D002340 1.2e-10 71.2 69 56.5
unitig_52.g17684 Utricularia gibba HOM05D002300 ORTHO05D002340 1.2e-10 71.2 69 46.4
HPP92_005581 Vanilla planifolia HOM05D002300 ORTHO05D002340 1.6e-10 70.9 82 45.1
HPP92_005593 Vanilla planifolia HOM05D002300 ORTHO05D002340 1.6e-10 70.9 82 45.1
ClCG02G010590 Citrullus lanatus HOM05D002300 ORTHO05D002340 6.0e-10 68.9 77 49.4
DCAR_022900 Daucus carota HOM05D002300 ORTHO05D002340 7.8e-10 68.6 68 48.5
Sed0006734 Sechium edule HOM05D002300 ORTHO05D002340 7.8e-10 68.6 77 46.8
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.0e-09 68.2 155 29.7
Solyc06g036600.3 Solanum lycopersicum HOM05D002300 ORTHO05D002340 1.3e-09 67.8 71 45.1
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 1.3e-09 67.8 69 43.5
HanXRQChr17g0570721 Helianthus annuus HOM05D002300 ORTHO05D002340 1.7e-09 67.4 68 47.1
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 2.3e-09 67.0 84 41.7
Mapoly0125s0028 Marchantia polymorpha HOM05D002300 ORTHO05D002340 8.7e-09 65.1 65 46.2
PGR083G2340 Punica granatum HOM05D002300 ORTHO05D002340 1.1e-08 64.7 83 45.8
Os09g0298700 Oryza sativa ssp. japonica HOM05D002300 ORTHO05D002340 1.9e-08 63.9 69 46.4
MD09G1134400 Malus domestica HOM05D002300 ORTHO05D002340 2.5e-08 63.5 69 44.9
AagrBONN_evm.TU.Sc2ySwM_344.3191 Anthoceros agrestis HOM05D002300 ORTHO05D002340 3.3e-08 63.2 70 45.7
Potri.014G171900 Populus trichocarpa HOM05D002300 ORTHO05D002340 4.3e-08 62.8 69 47.8
Prupe.3G192300 Prunus persica HOM05D002300 ORTHO05D002340 7.3e-08 62.0 82 40.2
EL10Ac9g22353 Beta vulgaris HOM05D002300 ORTHO05D002340 1.3e-07 61.2 81 42.0
Migut.N03099 Erythranthe guttata HOM05D002300 ORTHO05D002340 1.3e-07 61.2 81 40.7
RcHm_v2.0_Chr2g0155211 Rosa chinensis HOM05D002300 ORTHO05D002340 1.3e-07 61.2 80 38.8
vmacro09461 Vaccinium macrocarpon HOM05D002300 ORTHO05D002340 1.3e-07 61.2 69 46.4
FAN05G0147 Fragaria x ananassa HOM05D002300 ORTHO05D002340 1.6e-07 60.8 82 37.8
FAN09G0065 Fragaria x ananassa HOM05D002300 ORTHO05D002340 1.6e-07 60.8 82 39.0
Manes.12G068200 Manihot esculenta HOM05D002300 ORTHO05D002340 1.6e-07 60.8 69 44.9
Nn1g07662 Nelumbo nucifera HOM05D002300 ORTHO05D002340 1.6e-07 60.8 77 44.2
Rhsim04G0031600 Rhododendron simsii HOM05D002300 ORTHO05D002340 1.6e-07 60.8 69 44.9
CARHR217980 Cardamine hirsuta HOM05D002300 ORTHO05D002340 2.1e-07 60.5 69 43.5
Eucgr.K01370 Eucalyptus grandis HOM05D002300 ORTHO05D002340 2.1e-07 60.5 78 41.0
Thhalv10023280m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 2.1e-07 60.5 69 42.0
AUR62025102 Chenopodium quinoa HOM05D002300 ORTHO05D002340 3.6e-07 59.7 84 39.3
TWI36G0087 Tripterygium wilfordii HOM05D002300 ORTHO05D002340 3.6e-07 59.7 72 44.4
unitig_8.g3850 Utricularia gibba HOM05D002300 ORTHO05D002340 3.6e-07 59.7 69 46.4
Cpa.g.sc136.81 Carica papaya HOM05D002300 ORTHO05D002340 4.8e-07 59.3 69 43.5
Ciclev10018231m.g Citrus clementina HOM05D002300 ORTHO05D002340 4.8e-07 59.3 77 40.3
FvH4_6g40190 Fragaria vesca HOM05D002300 ORTHO05D002340 4.8e-07 59.3 82 36.6
FAN14G3385 Fragaria x ananassa HOM05D000872 ORTHO05D002340 4.8e-07 59.3 82 36.6
Phvul.L002837 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 4.8e-07 59.3 76 42.1
TWI18G0351 Tripterygium wilfordii HOM05D002300 ORTHO05D002340 6.2e-07 58.9 72 43.1
CBR_g19751 Chara braunii HOM05D002300 ORTHO05D002340 8.1e-07 58.5 74 37.8
Sabra14G0131400 Salix brachista HOM05D002300 ORTHO05D002340 8.1e-07 58.5 84 40.5
Sc15g0007390 Simmondsia chinensis HOM05D002300 ORTHO05D002340 8.1e-07 58.5 69 43.5
HPP92_021918 Vanilla planifolia HOM05D002300 ORTHO05D002340 8.1e-07 58.5 69 42.0
SEGI_15908 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 1.1e-06 58.2 64 43.8
AUR62037155 Chenopodium quinoa HOM05D002300 ORTHO05D002340 1.4e-06 57.8 84 38.1
QL04p065718 Quercus lobata HOM05D002300 ORTHO05D002340 1.8e-06 57.4 69 42.0
Solyc12g011050.2 Solanum lycopersicum HOM05D002300 ORTHO05D002340 1.8e-06 57.4 69 43.5
Sopen12g006420 Solanum pennellii HOM05D002300 ORTHO05D002340 1.8e-06 57.4 69 43.5
Os09g0516300 Oryza sativa ssp. japonica HOM05D002300 ORTHO05D002340 3.1e-06 56.6 78 43.6
Glyma.13G075300 Glycine max HOM05D002300 ORTHO05D002340 4.0e-06 56.2 81 37.0
ATR0743G014 Amborella trichopoda HOM05D002300 ORTHO05D002340 5.3e-06 55.8 50 52.0
Ca_16233_v3 Cicer arietinum L. HOM05D002300 ORTHO05D002340 6.9e-06 55.5 81 37.0
Glyma.20G049400 Glycine max HOM05D002300 ORTHO05D002340 9.0e-06 55.1 94 34.0
Lj6g0001194 Lotus japonicus HOM05D002300 ORTHO05D002340 9.0e-06 55.1 69 42.0


User provided reference genes

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