Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 7.1e-157 557.4 314 100.0
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 1.8e-152 542.7 310 99.0
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.8e-129 465.7 310 82.9
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 4.5e-119 431.8 310 69.7
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 3.8e-118 428.7 310 65.2
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 6.5e-118 427.9 310 79.0
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 1.1e-117 427.2 310 81.3
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 2.5e-117 426.0 310 65.2
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 4.2e-117 425.2 310 64.8
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 9.4e-117 424.1 310 67.1
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 1.8e-115 419.9 310 68.1
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 1.5e-114 416.8 310 75.5
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 2.0e-114 416.4 310 68.1
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 2.6e-114 416.0 310 63.2
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.8e-113 412.5 312 64.1
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 2.8e-113 412.5 310 62.9
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 3.7e-113 412.1 310 66.1
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 4.8e-113 411.8 310 65.8
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 7.0e-112 407.9 310 61.9
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.0e-111 406.4 310 63.9
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 2.0e-111 406.4 310 63.9
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 4.5e-111 405.2 314 77.7
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 7.7e-111 404.4 310 69.7
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 7.7e-111 404.4 310 63.5
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 1.3e-110 403.7 310 73.5
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 1.7e-110 403.3 334 70.7
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 3.8e-110 402.1 310 67.1
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 5.0e-110 401.7 310 63.5
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 8.5e-110 401.0 310 69.0
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 1.5e-109 400.2 313 72.8
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 2.5e-109 399.4 314 61.1
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 4.2e-109 398.7 347 65.7
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 5.5e-109 398.3 347 67.4
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 2.1e-108 396.4 310 76.1
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 8.0e-108 394.4 310 64.5
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 1.0e-107 394.0 311 77.2
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 1.4e-107 393.7 310 74.2
Migut.N01608 Erythranthe guttata HOM05D003531 ORTHO05D004354 4.0e-107 392.1 310 66.5
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 6.8e-107 391.3 310 60.0
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 2.0e-106 389.8 314 60.2
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 3.4e-106 389.0 316 59.5
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 4.4e-106 388.7 310 60.3
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 5.7e-106 388.3 310 71.9
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 7.5e-106 387.9 408 64.2
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 9.8e-106 387.5 310 60.0
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.2e-105 386.3 310 59.4
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 2.8e-105 386.0 310 59.4
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 6.3e-105 384.8 310 59.0
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 6.3e-105 384.8 308 60.1
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 8.3e-105 384.4 311 63.0
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 2.4e-104 382.9 310 66.8
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 2.4e-104 382.9 310 59.0
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 4.1e-104 382.1 325 57.2
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 7.0e-104 381.3 310 67.7
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 9.1e-104 380.9 313 58.8
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.6e-103 380.2 310 62.3
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 2.0e-103 379.8 310 59.4
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 2.0e-103 379.8 310 62.3
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 2.7e-103 379.4 310 62.6
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 1.3e-102 377.1 310 57.7
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 6.8e-99 364.8 299 58.2
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 1.5e-98 363.6 339 54.0
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.7e-97 360.1 336 60.7
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 2.2e-97 359.8 310 57.4
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 2.2e-97 359.8 310 56.5
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 3.7e-97 359.0 311 55.9
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 3.7e-97 359.0 310 57.7
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 2.4e-96 356.3 311 63.3
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 4.1e-96 355.5 310 59.0
Aqoxy2G00168 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 5.4e-96 355.1 311 56.6
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 5.4e-96 355.1 312 58.3
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 5.4e-96 355.1 180 85.6
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 5.4e-96 355.1 310 55.8
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 7.0e-96 354.8 312 57.7
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 7.0e-96 354.8 310 56.1
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 7.0e-96 354.8 314 53.8
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 9.2e-96 354.4 310 57.1
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 9.2e-96 354.4 315 54.6
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 2.7e-95 352.8 310 56.5
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 2.7e-95 352.8 310 56.5
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 5.9e-95 351.7 310 55.8
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 5.9e-95 351.7 310 55.8
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 7.8e-95 351.3 314 54.8
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 1.0e-94 350.9 318 54.4
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.3e-94 350.5 301 61.1
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 6.6e-94 348.2 315 54.6
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 6.6e-94 348.2 311 55.6
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 5.6e-93 345.1 315 55.9
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 9.5e-93 344.4 313 56.2
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 1.6e-92 343.6 310 57.1
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 1.6e-92 343.6 180 81.7
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 2.8e-92 342.8 312 57.1
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 6.2e-92 341.7 317 53.6
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.4e-91 340.5 370 48.9
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 4.4e-90 335.5 283 61.1
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 7.5e-90 334.7 310 55.2
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 9.8e-90 334.3 310 51.0
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 3.7e-89 332.4 172 82.0
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 3.2e-88 329.3 310 53.5
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 3.2e-88 329.3 310 53.5
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 7.0e-88 328.2 312 59.3
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 1.2e-87 327.4 310 53.2
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 1.2e-87 327.4 312 52.6
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 1.2e-87 327.4 312 52.6
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 7.8e-87 324.7 312 59.0
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 2.3e-86 323.2 311 57.2
MBI02_g23150_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 3.9e-86 322.4 326 51.8
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.9e-85 320.1 180 76.1
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 3.3e-85 319.3 310 51.3
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.6e-84 317.0 304 49.7
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 4.0e-83 312.4 310 50.0
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 1.5e-82 310.5 310 50.3
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 2.6e-82 309.7 310 49.7
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 1.3e-81 307.4 299 53.2
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 4.1e-80 302.4 311 60.8
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 1.6e-79 300.4 145 84.8
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 1.6e-79 300.4 310 49.4
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 3.0e-78 296.2 308 48.7
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 1.9e-77 293.5 310 48.4
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 1.2e-76 290.8 178 69.1
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 6.2e-76 288.5 333 45.0
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 8.1e-76 288.1 310 47.4
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.4e-75 287.3 311 46.9
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 1.4e-75 287.3 299 62.9
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 1.8e-75 287.0 161 75.2
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 3.1e-75 286.2 314 46.2
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 5.2e-75 285.4 180 70.0
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 1.2e-74 284.3 319 47.0
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 1.5e-74 283.9 313 46.3
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.7e-73 280.4 156 73.7
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 1.1e-72 277.7 284 56.7
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 3.2e-72 276.2 283 55.1
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 7.1e-72 275.0 287 62.0
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 6.0e-71 271.9 312 45.5
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 3.0e-70 269.6 310 45.8
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 3.3e-69 266.2 361 41.0
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 5.6e-69 265.4 319 44.2
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 4.7e-68 262.3 308 50.0
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 6.2e-68 261.9 336 42.9
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 1.1e-67 261.2 299 45.5
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 1.8e-67 260.4 278 48.2
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 6.8e-67 258.5 179 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3832 Anthoceros agrestis HOM05D003531 ORTHO05D004354 2.2e-65 253.4 335 39.7
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 1.1e-61 241.1 299 43.8
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 1.1e-61 241.1 321 38.9
BcaC06g33023 Brassica carinata HOM05D003531 ORTHO05D004354 7.3e-61 238.4 310 44.5
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 2.8e-60 236.5 339 37.8
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.4e-56 224.2 301 47.5
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 1.9e-56 223.8 334 42.5
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 4.0e-43 179.5 311 37.3
C02p42000 Brassica napus HOM05D003531 ORTHO05D004354 1.9e-32 144.1 81 70.4
BolC2t10232H Brassica oleracea HOM05D003531 ORTHO05D004354 1.2e-31 141.4 81 69.1
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 5.1e-30 136.0 280 48.6
BcaC01g03307 Brassica carinata HOM05D000305 ORTHO05D000065 1.1e-29 134.8 108 59.3
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.1e-29 134.8 216 35.6
C03p53830 Brassica napus HOM05D000305 ORTHO05D000065 4.8e-28 129.4 93 63.4
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 4.8e-28 129.4 314 32.8
BcaC06g36048 Brassica carinata HOM05D003531 ORTHO05D004354 1.4e-27 127.9 93 60.2
C06p37170 Brassica napus HOM05D003531 ORTHO05D004354 5.9e-26 122.5 76 65.8
SHI04073 Sapria himalayana HOM05D003531 ORTHO05D004354 5.5e-24 115.9 66 77.3
BcaC03g16378 Brassica carinata HOM05D003531 ORTHO05D004354 3.7e-20 103.2 76 61.8
BcaB05g24179 Brassica carinata HOM05D003531 ORTHO05D004354 8.2e-20 102.1 205 32.2
Zm00001eb410840 Zea mays HOM05D003531 ORTHO05D004354 6.9e-19 99.0 44 90.9
BcaB01g02046 Brassica carinata HOM05D003531 ORTHO05D015800 1.7e-17 94.4 87 50.6
FAN03G0464 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.9e-17 93.6 77 57.1
unitig_8.g3623 Utricularia gibba HOM05D003531 ORTHO05D004354 6.5e-17 92.4 310 28.4
BcaC09g49888 Brassica carinata HOM05D003531 ORTHO05D015800 2.1e-15 87.4 60 61.7
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.1e-15 87.4 60 61.7
BcaC08g45915 Brassica carinata HOM05D003531 ORTHO05D004354 1.1e-13 81.6 66 53.0
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.2e-12 77.4 69 53.6
CARHR058580 Cardamine hirsuta HOM05D003531 ORTHO05D004354 5.3e-11 72.8 48 66.7
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 3.5e-10 70.1 85 42.4
Solyc01g087340.3 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.3e-09 68.2 61 55.7
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.7e-09 67.8 53 60.4
CAN.G205.12 Capsicum annuum HOM05D003531 ORTHO05D004354 3.2e-08 63.5 28 89.3
MBI02_g05670_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 4.2e-08 63.2 25 100.0
SHI04072 Sapria himalayana HOM05D003531 ORTHO05D004354 1.6e-07 61.2 66 53.0
AL4G45755 Arabidopsis lyrata HOM05D000122 ORTHO05D000139 2.7e-07 60.5 66 53.0
Solyc01g087330.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.8e-06 57.8 24 95.8


User provided reference genes

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