Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p008050 Quercus lobata HOM05D002263 ORTHO05D012916 4.9e-118 428.3 311 100.0
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 1.3e-94 350.5 305 88.5
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 1.1e-93 347.4 305 86.6
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 3.3e-90 335.9 309 84.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.3e-81 307.4 311 66.6
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.8e-80 303.5 307 71.0
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 1.6e-76 290.4 307 74.6
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 1.5e-74 283.9 315 77.8
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-73 280.4 307 79.2
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 8.3e-73 278.1 305 72.1
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-71 274.2 314 77.7
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.4e-59 234.2 314 50.3
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.4e-59 234.2 306 48.7
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 4.4e-58 229.2 308 51.6
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 3.2e-56 223.0 310 50.3
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 9.2e-56 221.5 309 54.4
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 2.0e-55 220.3 309 50.8
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.0e-54 218.0 308 52.6
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.7e-54 217.2 315 59.7
QL05p088556 Quercus lobata HOM05D002263 ORTHO05D012916 3.3e-53 213.0 232 69.4
Sabra09G0043300 Salix brachista HOM05D002263 ORTHO05D003537 1.6e-52 210.7 308 48.4
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 8.1e-52 208.4 317 49.8
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 1.1e-51 208.0 306 50.7
QL08p021041 Quercus lobata HOM05D002263 ORTHO05D012916 6.8e-51 205.3 305 66.2
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.5e-50 204.1 371 40.7
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.7e-49 200.7 306 49.3
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 4.9e-49 199.1 307 50.5
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.9e-48 197.2 305 47.2
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.5e-45 187.6 305 43.6
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 1.5e-45 187.6 312 52.2
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 2.5e-45 186.8 312 43.9
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 8.9e-43 178.3 310 43.2
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.2e-42 177.9 307 46.6
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.4e-42 176.4 311 45.7
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 7.6e-42 175.3 311 46.0
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.9e-40 170.6 294 42.2
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 2.4e-40 170.2 308 48.1
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 3.2e-40 169.9 314 44.3
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.2e-39 167.9 314 42.4
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 1.6e-39 167.5 314 41.4
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 4.6e-39 166.0 310 39.7
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 6.0e-39 165.6 159 86.8
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 5.1e-38 162.5 330 45.8
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 8.6e-38 161.8 307 46.3
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 9.6e-37 158.3 314 38.5
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 2.8e-36 156.8 305 44.6
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.8e-36 156.8 213 47.9
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.4e-35 154.5 308 47.7
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 5.2e-35 152.5 311 44.1
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 8.9e-35 151.8 307 46.3
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 1.2e-34 151.4 315 41.0
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 1.5e-34 151.0 307 41.0
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.5e-34 151.0 307 46.6
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 2.0e-34 150.6 305 40.0
Hma1.2p1_2160F.1_g315590 Hydrangea macrophylla HOM05D002263 ORTHO05D012916 9.9e-34 148.3 207 50.7
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 9.9e-34 148.3 308 45.1
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 6.4e-33 145.6 309 40.5
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 6.4e-33 145.6 314 51.6
QL08p003462 Quercus lobata HOM05D002263 ORTHO05D012916 8.4e-33 145.2 139 74.8
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.1e-32 144.8 305 40.0
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 7.1e-32 142.1 314 53.2
QL08p031651 Quercus lobata HOM05D002263 ORTHO05D012916 7.1e-32 142.1 139 74.1
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 6.0e-31 139.0 313 37.7
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 6.6e-30 135.6 309 37.9
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.5e-29 134.4 315 41.0
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 2.5e-29 133.7 308 43.8
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 2.5e-29 133.7 309 44.3
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 3.3e-29 133.3 309 45.6
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 9.6e-29 131.7 190 43.7
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 2.1e-28 130.6 306 41.8
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 2.1e-28 130.6 309 41.1
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 8.1e-28 128.6 307 39.4
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 6.9e-27 125.6 198 42.9
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.0e-26 124.0 306 35.0
QL09p040356 Quercus lobata HOM05D002263 ORTHO05D012916 9.9e-26 121.7 202 48.5
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.7e-25 120.9 307 41.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 4.9e-25 119.4 313 36.4
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 6.4e-25 119.0 133 85.0
QL04p008686 Quercus lobata HOM05D002263 ORTHO05D012916 1.4e-24 117.9 66 95.5
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 1.9e-24 117.5 349 34.7
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.2e-24 116.7 306 32.7
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 4.2e-24 116.3 315 38.1
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 9.3e-24 115.2 306 39.5
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.2e-23 114.8 306 39.2
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 1.2e-23 114.8 306 40.5
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 7.9e-23 112.1 310 37.1
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 3.0e-22 110.2 308 42.9
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 3.0e-22 110.2 310 39.7
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.1e-21 108.2 312 33.0
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.9e-21 107.5 309 38.5
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 9.6e-21 105.1 306 37.9
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 6.2e-20 102.4 185 38.4
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 1.4e-19 101.3 319 33.9
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 1.4e-19 101.3 306 39.5
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 2.4e-19 100.5 307 41.0
QL08p003465 Quercus lobata HOM05D002263 ORTHO05D012916 6.9e-19 99.0 55 87.3
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 9.0e-19 98.6 308 35.7
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.2e-18 98.2 305 37.4
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.5e-18 97.8 285 33.3
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.4e-18 96.7 305 37.0
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.4e-18 96.7 316 36.4
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 5.8e-18 95.9 64 79.7
QL02p053676 Quercus lobata HOM05D002263 ORTHO05D003537 7.6e-18 95.5 55 85.5
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 7.6e-18 95.5 316 34.2
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.3e-17 94.7 288 40.6
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 2.2e-17 94.0 307 30.9
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.9e-17 93.6 343 36.7
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.4e-17 92.4 323 31.0
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 3.2e-16 90.1 306 34.3
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 9.3e-16 88.6 157 52.2
QL02p053675 Quercus lobata HOM05D002263 ORTHO05D012916 1.2e-15 88.2 101 71.3
QL93p2009_0025 Quercus lobata HOM05D002263 ORTHO05D012916 1.2e-15 88.2 106 68.9
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.6e-15 87.8 316 40.2
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 6.0e-15 85.9 305 36.7
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 6.0e-15 85.9 312 42.9
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 6.0e-15 85.9 313 31.3
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 1.0e-14 85.1 309 34.3
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.0e-14 85.1 339 36.9
QL02p048481 Quercus lobata HOM05D002263 ORTHO05D012916 5.1e-14 82.8 136 56.6
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 8.7e-14 82.0 326 31.6
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 7.4e-13 79.0 305 34.8
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 7.4e-13 79.0 310 28.4
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 1.3e-12 78.2 171 33.3
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.6e-12 77.8 307 36.8
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.6e-12 77.8 168 33.9
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 2.8e-12 77.0 171 33.3
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 2.8e-12 77.0 171 33.3
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 8.1e-12 75.5 308 38.0
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 8.1e-12 75.5 190 31.1
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.1e-11 75.1 309 33.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.8e-11 74.3 184 31.0
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.4e-11 73.9 49 69.4
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 9.0e-11 72.0 327 43.4
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.5e-10 71.2 62 56.5
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.3e-09 68.2 174 29.9
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 6.5e-09 65.9 313 28.1
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.1e-08 65.1 329 31.6
MBI02_g23142_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D012916 3.2e-08 63.5 146 41.8
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 4.2e-08 63.2 310 25.8
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.6e-07 61.2 304 27.3
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 2.1e-07 60.8 64 48.4
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.7e-07 60.5 334 28.1
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 2.7e-07 60.5 64 51.6
Zm00001eb190460 Zea mays HOM05D002263 ORTHO05D003537 1.0e-06 58.5 64 46.9
EL10As2g23282 Beta vulgaris HOM05D002263 ORTHO05D012916 1.3e-06 58.2 55 50.9
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 1.8e-06 57.8 331 32.6
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 2.3e-06 57.4 60 43.3
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 5.1e-06 56.2 48 56.2
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 5.1e-06 56.2 48 56.2
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 8.7e-06 55.5 49 53.1


User provided reference genes

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