Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p006161 Quercus lobata HOM05D000433 ORTHO05D000443 4.5e-42 174.1 84 100.0
QL04p006235 Quercus lobata HOM05D000433 ORTHO05D000443 1.4e-38 162.5 78 100.0
QL04p006145 Quercus lobata HOM05D000009 ORTHO05D000008 1.8e-30 135.6 77 89.6
CiPaw.13G005400 Carya illinoinensis HOM05D000433 ORTHO05D000443 2.6e-29 131.7 78 78.2
CiPaw.13G005500 Carya illinoinensis HOM05D000433 ORTHO05D000443 2.2e-28 128.6 78 76.9
Haze_03200 Corylus avellana HOM05D000433 ORTHO05D000443 7.8e-26 120.2 78 74.4
Haze_03198 Corylus avellana HOM05D000433 ORTHO05D000443 5.0e-25 117.5 78 74.4
Cfa010772 Carpinus fangiana HOM05D000433 ORTHO05D000443 1.1e-24 116.3 78 73.1
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 2.5e-24 115.2 78 71.8
Rhsim07G0189000 Rhododendron simsii HOM05D000433 ORTHO05D000443 4.3e-24 114.4 66 77.3
Atru.chr11.2621 Acer truncatum HOM05D000433 ORTHO05D000443 5.6e-24 114.0 78 73.1
Cpa.g.sc125.8 Carica papaya HOM05D000433 ORTHO05D000443 1.2e-23 112.8 76 73.7
Sed0007420 Sechium edule HOM05D000433 ORTHO05D000443 1.2e-23 112.8 78 70.5
Atru.chr11.2620 Acer truncatum HOM05D000433 ORTHO05D000443 3.6e-23 111.3 78 71.8
Duzib268G0366 Durio zibethinus HOM05D000433 ORTHO05D000443 3.6e-23 111.3 81 69.1
ClCG09G004110 Citrullus lanatus HOM05D000433 ORTHO05D000443 8.1e-23 110.2 78 69.2
Ciclev10031039m.g Citrus clementina HOM05D000433 ORTHO05D000443 8.1e-23 110.2 78 71.8
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 1.4e-22 109.4 78 65.4
MELO3C023555.2 Cucumis melo HOM05D000433 ORTHO05D000443 1.4e-22 109.4 78 67.9
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 1.4e-22 109.4 65 72.3
TPR.G1878 Trifolium pratense HOM05D000433 ORTHO05D000443 1.4e-22 109.4 65 72.3
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 1.8e-22 109.0 78 65.4
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 3.1e-22 108.2 65 72.3
CsaV3_7G031010 Cucumis sativus L. HOM05D000433 ORTHO05D000443 3.1e-22 108.2 78 66.7
Potri.009G060500 Populus trichocarpa HOM05D000433 ORTHO05D000443 4.0e-22 107.8 75 68.0
Phvul.011G211200 Phaseolus vulgaris HOM05D000433 ORTHO05D000443 5.2e-22 107.5 67 76.1
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 6.8e-22 107.1 78 64.1
TAR369G0420 Trochodendron aralioides HOM05D000433 ORTHO05D000443 6.8e-22 107.1 78 65.4
TPR.G29608 Trifolium pratense HOM05D000433 ORTHO05D000443 1.5e-21 105.9 64 68.8
Psat4g148800 Pisum sativum HOM05D000433 ORTHO05D000443 2.0e-21 105.5 64 70.3
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 2.0e-21 105.5 81 66.7
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 2.6e-21 105.1 63 77.8
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.6e-21 105.1 63 77.8
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.6e-21 105.1 63 77.8
Hma1.2p1_0184F.1_g081180 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 2.6e-21 105.1 67 74.6
PGR031G0340 Punica granatum HOM05D000433 ORTHO05D000443 2.6e-21 105.1 78 66.7
QL04p006260 Quercus lobata HOM05D000433 ORTHO05D000443 2.6e-21 105.1 86 64.0
vmacro04812 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 2.6e-21 105.1 64 75.0
Glyma.13G202200 Glycine max HOM05D000433 ORTHO05D000443 4.4e-21 104.4 78 65.4
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 4.4e-21 104.4 78 61.5
Manes.10G141300 Manihot esculenta HOM05D000433 ORTHO05D000443 5.8e-21 104.0 75 66.7
Sabra16G0163100 Salix brachista HOM05D000433 ORTHO05D000443 5.8e-21 104.0 75 68.0
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 7.5e-21 103.6 63 76.2
Potri.001G265400 Populus trichocarpa HOM05D000433 ORTHO05D000443 7.5e-21 103.6 75 65.3
CSS0012422 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 9.9e-21 103.2 64 70.3
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 1.7e-20 102.4 76 63.2
Dinv43438 Davidia involucrata HOM05D000433 ORTHO05D000443 1.7e-20 102.4 63 76.2
Eucgr.G03362 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.7e-20 102.4 67 68.7
Eucgr.G03374 Eucalyptus grandis HOM05D000433 ORTHO05D000443 2.2e-20 102.1 80 62.5
Glyma.12G236650 Glycine max HOM05D000433 ORTHO05D000443 2.2e-20 102.1 78 65.4
HanXRQChr17g0562991 Helianthus annuus HOM05D000433 ORTHO05D000443 2.2e-20 102.1 65 69.2
MD07G1011500 Malus domestica HOM05D000433 ORTHO05D000443 2.2e-20 102.1 78 64.1
TWI73G0222 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 2.2e-20 102.1 76 63.2
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.9e-20 101.7 63 76.2
Ah.10g038810 Amaranthus hybridus HOM05D000433 ORTHO05D000443 3.7e-20 101.3 63 74.6
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 4.9e-20 100.9 63 74.6
EL10Ac2g04335 Beta vulgaris HOM05D000433 ORTHO05D000443 6.4e-20 100.5 64 73.4
Lalb_Chr03g0034111 Lupinus albus HOM05D000433 ORTHO05D000443 6.4e-20 100.5 76 63.2
TAR623G0564 Trochodendron aralioides HOM05D000433 ORTHO05D000443 6.4e-20 100.5 76 64.5
PSO675G1923 Papaver somniferum HOM05D000433 ORTHO05D000443 8.3e-20 100.1 79 64.6
ATR0332G045 Amborella trichopoda HOM05D000433 ORTHO05D000443 1.1e-19 99.8 78 59.0
Aqoxy2G00193 Aquilegia oxysepala HOM05D000433 ORTHO05D000443 1.4e-19 99.4 76 55.3
COL.COLO4_04858 Corchorus olitorius HOM05D000433 ORTHO05D000443 1.4e-19 99.4 75 62.7
Cc02_g28080 Coffea canephora HOM05D000433 ORTHO05D000443 1.9e-19 99.0 62 74.2
Medtr8g037290 Medicago truncatula HOM05D000433 ORTHO05D000443 1.9e-19 99.0 65 66.2
VMungo1127G1125 Vigna mungo HOM05D000433 ORTHO05D000443 1.9e-19 99.0 67 68.7
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 2.4e-19 98.6 63 68.3
Lj7C571T11 Lonicera japonica HOM05D000433 ORTHO05D000443 3.2e-19 98.2 78 64.1
PSO541G1646 Papaver somniferum HOM05D000433 ORTHO05D000443 3.2e-19 98.2 79 63.3
Haze_03196 Corylus avellana HOM05D000433 ORTHO05D000443 4.1e-19 97.8 78 64.1
AUR62023071 Chenopodium quinoa HOM05D000433 ORTHO05D000443 5.4e-19 97.4 63 71.4
Gohir.A08G054300 Gossypium hirsutum HOM05D000433 ORTHO05D000443 7.1e-19 97.1 81 63.0
GSVIVG01032103001 Vitis vinifera HOM05D000433 ORTHO05D000443 7.1e-19 97.1 78 60.3
MD02G1309600 Malus domestica HOM05D000433 ORTHO05D000443 9.2e-19 96.7 62 71.0
DCAR_003216 Daucus carota HOM05D000433 ORTHO05D000443 1.6e-18 95.9 79 58.2
PGR044G0170 Punica granatum HOM05D000433 ORTHO05D000443 1.6e-18 95.9 76 61.8
Gohir.D08G064000 Gossypium hirsutum HOM05D000433 ORTHO05D000443 2.1e-18 95.5 81 61.7
Potri.001G265600 Populus trichocarpa HOM05D000433 ORTHO05D000443 2.1e-18 95.5 78 65.4
AL5G46380 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 2.7e-18 95.1 65 63.1
DCAR_022386 Daucus carota HOM05D000433 ORTHO05D000443 2.7e-18 95.1 78 60.3
Prupe.2G014700 Prunus persica HOM05D000433 ORTHO05D000443 3.5e-18 94.7 63 68.3
AUR62009389 Chenopodium quinoa HOM05D000433 ORTHO05D000443 4.6e-18 94.4 63 69.8
ATR0605G288 Amborella trichopoda HOM05D000433 ORTHO05D000443 6.0e-18 94.0 63 69.8
Potri.001G265900 Populus trichocarpa HOM05D000433 ORTHO05D000443 6.0e-18 94.0 78 65.4
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 6.0e-18 94.0 76 63.2
PGR044G1035 Punica granatum HOM05D000433 ORTHO05D000443 7.8e-18 93.6 76 60.5
PGR058G0003 Punica granatum HOM05D000433 ORTHO05D000443 7.8e-18 93.6 76 60.5
HanXRQChr16g0524471 Helianthus annuus HOM05D000433 ORTHO05D000443 1.0e-17 93.2 72 63.9
Peaxi162Scf00953g00218 Petunia axillaris HOM05D000433 ORTHO05D000443 1.0e-17 93.2 64 65.6
BcaC02g10356 Brassica carinata HOM05D000433 ORTHO05D000443 1.3e-17 92.8 63 66.7
A04p00060 Brassica napus HOM05D000433 ORTHO05D000443 1.3e-17 92.8 65 64.6
C04p29820 Brassica napus HOM05D000433 ORTHO05D000443 1.3e-17 92.8 63 66.7
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 1.3e-17 92.8 63 66.7
Gorai.004G066100 Gossypium raimondii HOM05D000433 ORTHO05D000443 1.3e-17 92.8 81 60.5
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 1.3e-17 92.8 63 65.1
THA.LOC104823025 Tarenaya hassleriana HOM05D000433 ORTHO05D000443 1.7e-17 92.4 65 66.2
Rhsim07G0056200 Rhododendron simsii HOM05D000433 ORTHO05D000443 2.3e-17 92.0 79 60.8
Aa31LG10G17400 Aethionema arabicum HOM05D000433 ORTHO05D000443 3.0e-17 91.7 61 65.6
AT3G63520 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 3.0e-17 91.7 65 60.0
BcaB02g08056 Brassica carinata HOM05D000433 ORTHO05D000443 3.0e-17 91.7 63 66.7
BraA04t15726Z Brassica rapa HOM05D000433 ORTHO05D000443 3.0e-17 91.7 63 66.7
Carub.0005s3013 Capsella rubella HOM05D000433 ORTHO05D000443 3.0e-17 91.7 65 61.5
Ciclev10031014m.g Citrus clementina HOM05D000433 ORTHO05D000443 3.0e-17 91.7 79 62.0
Lalb_Chr20g0107971 Lupinus albus HOM05D000433 ORTHO05D000443 3.0e-17 91.7 67 62.7
arahy.Tifrunner.gnm1.ann1.5NX4LW Arachis hypogaea HOM05D000433 ORTHO05D000443 3.9e-17 91.3 78 56.4
Hund14182 Selenicereus undatus HOM05D000433 ORTHO05D000443 3.9e-17 91.3 63 66.7
AUR62044218 Chenopodium quinoa HOM05D000433 ORTHO05D000443 5.1e-17 90.9 62 69.4
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 5.1e-17 90.9 61 70.5
Lsat_1_v5_gn_4_31520 Lactuca sativa HOM05D000433 ORTHO05D000443 5.1e-17 90.9 64 68.8
Sc14g0005050 Simmondsia chinensis HOM05D000433 ORTHO05D000443 5.1e-17 90.9 64 67.2
Atru.chr11.2618 Acer truncatum HOM05D000433 ORTHO05D000443 8.6e-17 90.1 62 69.4
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 8.6e-17 90.1 62 67.7
A09p55970 Brassica napus HOM05D000433 ORTHO05D000443 1.1e-16 89.7 63 63.5
BraA09t40999Z Brassica rapa HOM05D000433 ORTHO05D000443 1.1e-16 89.7 63 63.5
arahy.Tifrunner.gnm1.ann1.8D7DUE Arachis hypogaea HOM05D000433 ORTHO05D000443 1.5e-16 89.4 78 55.1
Nn2g15315 Nelumbo nucifera HOM05D000433 ORTHO05D000443 1.5e-16 89.4 78 62.8
Atru.chr11.2617 Acer truncatum HOM05D000433 ORTHO05D000443 1.9e-16 89.0 62 67.7
Sed0008090 Sechium edule HOM05D000433 ORTHO05D000443 1.9e-16 89.0 76 59.2
DCAR_022390 Daucus carota HOM05D000433 ORTHO05D000443 2.5e-16 88.6 64 65.6
Thhalv10005877m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 2.5e-16 88.6 66 59.1
Nitab4.5_0004290g0050 Nicotiana tabacum HOM05D000433 ORTHO05D000443 2.5e-16 88.6 64 60.9
PGR004G2078 Punica granatum HOM05D000433 ORTHO05D000443 2.5e-16 88.6 77 62.3
DCAR_022385 Daucus carota HOM05D000433 ORTHO05D000443 3.3e-16 88.2 62 64.5
BcaB08g35129 Brassica carinata HOM05D000433 ORTHO05D000443 4.3e-16 87.8 62 64.5
HPP92_023574 Vanilla planifolia HOM05D000433 ORTHO05D000443 4.3e-16 87.8 62 59.7
Solyc01g087250.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 5.6e-16 87.4 64 64.1
vmacro13671 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 5.6e-16 87.4 67 67.2
A09p55980 Brassica napus HOM05D000433 ORTHO05D000443 7.3e-16 87.0 62 62.9
BraA09t41000Z Brassica rapa HOM05D000433 ORTHO05D000443 7.3e-16 87.0 62 62.9
HanXRQChr16g0524461 Helianthus annuus HOM05D000433 ORTHO05D000443 7.3e-16 87.0 63 68.3
Nitab4.5_0007165g0030 Nicotiana tabacum HOM05D000433 ORTHO05D000443 7.3e-16 87.0 64 62.5
Atru.chr11.2619 Acer truncatum HOM05D000433 ORTHO05D000443 9.5e-16 86.7 62 67.7
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 1.2e-15 86.3 70 64.3
Nitab4.5_0002918g0020 Nicotiana tabacum HOM05D000433 ORTHO05D000443 1.2e-15 86.3 64 62.5
CAN.G219.7 Capsicum annuum HOM05D000433 ORTHO05D000443 1.6e-15 85.9 64 62.5
Migut.B01292 Erythranthe guttata HOM05D000433 ORTHO05D000443 1.6e-15 85.9 78 52.6
C08p38950 Brassica napus HOM05D000433 ORTHO05D000443 2.1e-15 85.5 62 61.3
BolC8t51468H Brassica oleracea HOM05D000433 ORTHO05D000443 2.1e-15 85.5 62 61.3
Oeu053257.1 Olea europaea HOM05D000433 ORTHO05D000443 2.1e-15 85.5 71 63.4
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 2.8e-15 85.1 64 62.5
Sopen01g034310 Solanum pennellii HOM05D000433 ORTHO05D000443 2.8e-15 85.1 65 63.1
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 3.6e-15 84.7 63 65.1
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 3.6e-15 84.7 78 60.3
Sp5g00060 Schrenkiella parvula HOM05D000433 ORTHO05D000443 3.6e-15 84.7 65 60.0
MSTRG.17028 Avicennia marina HOM05D000433 ORTHO05D000443 8.1e-15 83.6 64 62.5
BcaC07g40898 Brassica carinata HOM05D000433 ORTHO05D000443 8.1e-15 83.6 62 61.3
C08p38960 Brassica napus HOM05D000433 ORTHO05D000443 8.1e-15 83.6 62 61.3
BolC8t51469H Brassica oleracea HOM05D000433 ORTHO05D000443 8.1e-15 83.6 62 61.3
PSO782G5515 Papaver somniferum HOM05D000433 ORTHO05D000443 8.1e-15 83.6 64 62.5
A09p56050 Brassica napus HOM05D000433 ORTHO05D000443 1.1e-14 83.2 59 62.7
CAN.G219.9 Capsicum annuum HOM05D000433 ORTHO05D000443 1.1e-14 83.2 74 55.4
Solyc01g087270.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 1.4e-14 82.8 65 60.0
Oeu007868.2 Olea europaea HOM05D000433 ORTHO05D000443 1.8e-14 82.4 64 60.9
PSO782G0017 Papaver somniferum HOM05D000433 ORTHO05D000443 1.8e-14 82.4 77 51.9
SGA_v2.0_scaffold119G32738 Striga asiatica HOM05D000433 ORTHO05D000443 1.8e-14 82.4 63 61.9
CDE10G1079 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 4.0e-14 81.3 63 61.9
Oeu049497.3 Olea europaea HOM05D000433 ORTHO05D000443 5.2e-14 80.9 62 62.9
Lj9C633G15 Lonicera japonica HOM05D000433 ORTHO05D000443 6.8e-14 80.5 65 58.5
SalBow5G1887 Salvia bowleyana HOM05D000433 ORTHO05D000443 6.8e-14 80.5 63 60.3
PGR044G2631 Punica granatum HOM05D000433 ORTHO05D000443 1.5e-13 79.3 87 49.4
Carub.0002s1723 Capsella rubella HOM05D000433 ORTHO05D000443 2.0e-13 79.0 64 56.2
Oeu007851.1 Olea europaea HOM05D000433 ORTHO05D000443 2.0e-13 79.0 64 57.8
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 2.0e-13 79.0 43 86.0
AUR62025811 Chenopodium quinoa HOM05D000433 ORTHO05D000443 4.4e-13 77.8 56 66.1
Haze_03197 Corylus avellana HOM05D000433 ORTHO05D000443 4.4e-13 77.8 72 58.3
CANSAT80G0472 Cannabis sativa HOM05D000433 ORTHO05D000443 5.8e-13 77.4 81 51.9
Nitab4.5_0004290g0040 Nicotiana tabacum HOM05D000433 ORTHO05D000443 5.8e-13 77.4 67 61.2
Peaxi162Scf00953g00316 Petunia axillaris HOM05D000433 ORTHO05D000443 5.8e-13 77.4 64 60.9
Solyc01g087260.4 Solanum lycopersicum HOM05D000433 ORTHO05D000443 1.3e-12 76.3 63 58.7
CANSAT80G1890 Cannabis sativa HOM05D000433 ORTHO05D000443 2.2e-12 75.5 78 43.6
Zm00001eb402840 Zea mays HOM05D000433 ORTHO05D000443 4.9e-12 74.3 64 53.1
Os12g0640600 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 5.4e-11 70.9 70 48.6
MBI01_g18876_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 7.1e-11 70.5 60 58.3
Peaxi162Scf00953g00032 Petunia axillaris HOM05D000433 ORTHO05D000443 1.9e-08 62.4 54 61.1
GSVIVG01032110001 Vitis vinifera HOM05D000433 ORTHO05D000443 4.7e-07 57.8 35 74.3


User provided reference genes

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