Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 9.2e-74 280.0 131 100.0
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.3e-40 169.9 82 92.7
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 3.0e-40 168.7 82 92.7
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 3.9e-40 168.3 75 97.3
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 5.1e-40 167.9 79 91.1
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 6.6e-40 167.5 82 91.5
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 6.6e-40 167.5 82 90.2
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 8.7e-40 167.2 82 91.5
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 1.1e-39 166.8 83 91.6
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.9e-39 166.0 82 91.5
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.9e-39 166.0 79 89.9
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.5e-39 165.6 75 94.7
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.5e-39 165.6 75 94.7
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 2.5e-39 165.6 82 91.5
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 3.3e-39 165.2 75 94.7
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.3e-39 164.9 82 90.2
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 4.3e-39 164.9 82 90.2
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 4.3e-39 164.9 75 94.7
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 4.3e-39 164.9 75 94.7
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 4.3e-39 164.9 75 94.7
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 4.3e-39 164.9 75 94.7
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 4.3e-39 164.9 75 94.7
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 5.6e-39 164.5 82 87.8
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.6e-39 164.5 82 90.2
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 5.6e-39 164.5 82 90.2
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 5.6e-39 164.5 82 90.2
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 5.6e-39 164.5 82 87.8
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 7.3e-39 164.1 82 87.8
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 9.6e-39 163.7 79 89.9
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 9.6e-39 163.7 75 94.7
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 9.6e-39 163.7 95 76.8
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.3e-38 163.3 74 95.9
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-38 163.3 81 86.4
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-38 163.3 81 86.4
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 1.6e-38 162.9 82 90.2
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.6e-38 162.9 77 90.9
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 1.6e-38 162.9 74 94.6
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 2.1e-38 162.5 82 89.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 3.6e-38 161.8 75 93.3
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.6e-38 161.8 74 94.6
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 4.8e-38 161.4 82 89.0
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 4.8e-38 161.4 81 85.2
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 4.8e-38 161.4 77 89.6
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 4.8e-38 161.4 82 85.4
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 4.8e-38 161.4 77 89.6
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 8.1e-38 160.6 107 70.1
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.1e-37 160.2 74 94.6
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.1e-37 160.2 74 94.6
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.1e-37 160.2 79 86.1
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.4e-37 159.8 81 84.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 1.8e-37 159.5 82 87.8
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.8e-37 159.5 75 90.7
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 2.4e-37 159.1 74 93.2
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.4e-37 159.1 75 90.7
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 2.4e-37 159.1 75 92.0
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 2.4e-37 159.1 75 89.3
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 3.1e-37 158.7 74 93.2
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.1e-37 158.7 74 93.2
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 4.0e-37 158.3 74 90.5
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 5.3e-37 157.9 116 62.9
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 6.9e-37 157.5 74 91.9
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 6.9e-37 157.5 82 84.1
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 9.0e-37 157.1 75 88.0
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.2e-36 156.8 75 88.0
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 1.2e-36 156.8 74 90.5
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 1.2e-36 156.8 116 62.1
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 1.2e-36 156.8 75 89.3
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 1.2e-36 156.8 75 89.3
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 1.2e-36 156.8 79 86.1
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.5e-36 156.4 75 88.0
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.5e-36 156.4 74 91.9
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 1.5e-36 156.4 82 84.1
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.0e-36 156.0 75 86.7
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.0e-36 156.0 75 86.7
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 2.0e-36 156.0 74 90.5
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 2.6e-36 155.6 86 80.2
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.6e-36 155.6 75 88.0
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.6e-36 155.6 79 86.1
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.6e-36 155.6 78 83.3
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.4e-36 155.2 75 86.7
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 3.4e-36 155.2 74 90.5
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 3.4e-36 155.2 74 90.5
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 4.4e-36 154.8 79 84.8
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 4.4e-36 154.8 74 90.5
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 5.8e-36 154.5 74 89.2
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 5.8e-36 154.5 74 87.8
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 7.6e-36 154.1 81 82.7
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 7.6e-36 154.1 74 87.8
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 9.9e-36 153.7 75 85.3
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.3e-35 153.3 75 85.3
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 3.8e-35 151.8 80 85.0
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 6.4e-35 151.0 75 86.7
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 1.1e-34 150.2 74 89.2
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.9e-34 149.4 74 86.5
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.4e-34 149.1 74 85.1
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 3.2e-34 148.7 75 84.0
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 3.2e-34 148.7 74 85.1
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 5.4e-34 147.9 74 85.1
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 5.4e-34 147.9 74 85.1
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 5.4e-34 147.9 74 85.1
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 5.4e-34 147.9 74 85.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 7.1e-34 147.5 98 67.3
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 9.3e-34 147.1 73 86.3
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 9.3e-34 147.1 74 86.5
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 9.3e-34 147.1 74 86.5
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 2.1e-33 146.0 75 85.3
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.0e-32 143.7 74 82.4
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.3e-32 143.3 75 84.0
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-32 143.3 75 84.0
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-32 143.3 75 84.0
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-32 143.3 75 84.0
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-32 143.3 75 84.0
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.3e-32 143.3 83 72.3
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.7e-32 142.9 74 81.1
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 3.9e-32 141.7 111 61.3
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 5.1e-32 141.4 74 82.4
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.3e-30 136.7 73 78.1
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.3e-30 136.7 73 78.1
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.6e-30 136.3 74 78.4
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.6e-30 136.3 91 67.0
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.1e-30 136.0 74 82.4
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 8.1e-30 134.0 79 72.2
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.1e-29 133.7 80 71.2
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.1e-29 133.7 80 71.2
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.4e-29 133.3 82 65.9
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.4e-29 132.5 82 74.4
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 4.0e-29 131.7 75 80.0
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 9.0e-29 130.6 110 57.3
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.5e-28 129.8 74 71.6
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.4e-26 123.2 58 91.4
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.3e-24 115.9 79 69.6
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 9.6e-23 110.5 81 63.0
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.8e-22 109.0 64 70.3
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.8e-22 109.0 64 70.3
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.8e-22 109.0 64 70.3
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 6.2e-22 107.8 74 55.4
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 2.4e-21 105.9 85 51.8
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 2.0e-20 102.8 59 74.6
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 7.1e-18 94.4 56 75.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 1.2e-17 93.6 56 66.1
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.9e-15 86.3 74 62.2
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 2.5e-15 85.9 104 49.0
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 6.9e-13 77.8 67 49.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 1.2e-09 67.0 69 44.9
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.6e-09 66.6 79 45.6
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 1.0e-08 63.9 36 72.2


User provided reference genes

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