Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 0.0e+00 1129.4 786 100.0
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.3e-244 850.1 795 74.0
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 4.7e-242 841.6 796 74.1
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.7e-229 799.3 791 71.7
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 8.4e-215 751.1 787 67.6
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 3.5e-205 719.2 786 67.3
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.3e-204 717.2 785 65.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.2e-198 695.7 789 69.5
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 9.4e-198 694.5 790 66.8
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.2e-197 694.1 789 64.8
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.6e-197 693.7 788 64.1
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 2.7e-197 693.0 791 69.5
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.8e-196 690.3 788 65.2
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.3e-194 684.1 775 66.6
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 3.7e-194 682.6 789 63.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 4.5e-192 675.6 791 62.6
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 5.0e-191 672.2 788 61.4
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.5e-190 669.8 790 71.4
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 7.9e-189 664.8 785 57.1
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.4e-188 664.1 789 66.2
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 1.8e-188 663.7 789 66.5
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 3.0e-188 662.9 795 66.4
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.5e-187 660.6 804 61.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.5e-187 660.6 787 65.8
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.8e-186 656.4 784 63.8
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 2.4e-185 653.3 791 65.6
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.0e-184 650.2 792 65.4
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.7e-183 647.1 785 66.8
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-182 644.4 795 62.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.5e-182 644.0 777 65.3
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.6e-181 640.6 784 60.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 3.6e-181 639.4 791 63.6
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 4.7e-181 639.0 778 65.9
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.4e-180 637.5 777 67.7
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 6.7e-180 635.2 790 61.9
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 8.8e-180 634.8 785 62.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.5e-179 634.0 774 64.0
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.6e-179 633.3 781 62.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.2e-178 630.2 791 63.3
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.8e-178 629.8 778 64.0
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.2e-178 628.2 790 61.6
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.8e-177 627.1 789 62.4
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 9.1e-177 624.8 779 62.6
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.0e-175 621.3 784 64.2
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.2e-175 620.2 789 62.5
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 6.5e-175 618.6 793 63.7
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 4.7e-173 612.5 816 62.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.8e-172 610.5 793 59.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.3e-172 610.1 792 61.7
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.3e-172 610.1 783 63.7
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.2e-171 607.8 812 59.2
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 3.4e-171 606.3 743 62.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.2e-170 603.6 785 61.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 3.7e-170 602.8 781 66.8
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 6.3e-170 602.1 785 57.5
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.8e-164 582.0 823 55.3
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 8.8e-164 581.6 785 61.7
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 1.2e-163 581.3 792 58.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.7e-162 577.4 779 58.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 8.3e-162 575.1 782 55.5
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 9.1e-161 571.6 792 63.5
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.0e-160 570.5 774 60.3
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.7e-160 570.1 793 56.9
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 3.5e-160 569.7 711 63.7
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 3.8e-159 566.2 774 59.4
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.9e-158 563.9 790 54.9
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.3e-158 563.1 793 57.1
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 2.1e-157 560.5 791 51.3
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.8e-157 560.1 765 60.3
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 5.7e-155 552.4 787 58.1
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 2.9e-154 550.1 783 55.0
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 4.9e-154 549.3 856 55.5
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.4e-153 547.7 803 51.2
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.4e-153 547.0 795 52.2
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 4.1e-153 546.2 796 52.8
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.2e-152 544.7 796 53.0
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 5.9e-152 542.3 803 50.1
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 7.3e-150 535.4 800 57.5
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 3.1e-148 530.0 794 55.3
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.7e-146 524.2 790 57.5
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.2e-145 520.0 797 54.6
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 4.6e-144 516.2 806 51.5
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 6.0e-144 515.8 784 58.3
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 7.8e-144 515.4 742 50.9
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.9e-142 510.8 798 54.5
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.9e-142 510.8 793 53.6
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 9.5e-142 508.4 765 52.0
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 8.1e-141 505.4 787 55.8
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.5e-139 501.1 782 53.7
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 4.4e-139 499.6 787 54.8
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 6.4e-138 495.7 785 54.8
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 6.4e-138 495.7 785 54.8
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 8.3e-138 495.4 786 55.2
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.4e-137 493.8 784 54.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 7.1e-137 492.3 753 46.7
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-135 488.0 782 54.0
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.7e-135 487.6 798 54.5
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 3.0e-135 486.9 788 54.4
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 8.6e-135 485.3 802 49.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 3.3e-134 483.4 784 56.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 6.2e-133 479.2 789 56.1
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.1e-132 478.4 800 53.0
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-132 478.0 781 56.7
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 2.3e-132 477.2 789 55.3
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 3.1e-132 476.9 791 54.0
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 4.4e-131 473.0 806 52.6
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 5.8e-131 472.6 809 57.2
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.9e-130 470.3 776 55.4
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 8.4e-130 468.8 796 49.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.1e-128 464.2 760 54.5
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.7e-128 463.8 755 53.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.3e-127 461.5 724 45.7
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 4.6e-120 436.4 792 46.2
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 4.3e-118 429.9 794 49.9
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.4e-108 398.3 793 47.7
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.3e-108 396.4 851 50.9
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.1e-105 388.7 697 48.2
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.3e-101 375.2 840 50.5
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.6e-101 374.8 844 49.5
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.3e-94 350.1 567 55.4
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 3.4e-91 340.5 793 50.2
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 4.5e-83 313.5 589 53.8
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.9e-82 310.8 279 60.9
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 3.1e-76 290.8 324 55.9
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 3.4e-75 287.3 271 64.9
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-70 271.6 260 64.2
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 9.1e-60 236.1 781 37.6
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 1.2e-59 235.7 250 53.2
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.3e-58 232.3 223 66.4
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.4e-52 212.2 189 66.1
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.1e-52 210.7 293 48.5
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.6e-51 208.8 315 45.1
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-43 180.6 279 50.2
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 7.7e-43 179.9 132 78.0
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 2.6e-38 164.9 100 81.0
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.3e-26 125.9 71 87.3
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.2e-24 119.4 164 50.0
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 4.0e-23 114.4 71 81.7
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 4.9e-21 107.5 167 41.3
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 2.3e-15 88.6 85 47.1
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 8.9e-15 86.7 141 41.8
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 8.9e-15 86.7 140 42.1
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.2e-13 82.0 88 54.5
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 4.1e-12 77.8 103 40.8
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 5.4e-12 77.4 139 36.0
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 7.1e-12 77.0 75 54.7
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 1.2e-08 66.2 191 29.8
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 1.6e-08 65.9 191 29.3
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 1.6e-08 65.9 191 29.3
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.6e-08 64.7 119 43.7
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-07 63.2 76 52.6
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 8.9e-07 60.1 87 32.2
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 8.9e-07 60.1 87 32.2
TWI60G1440 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 3.4e-06 58.2 70 37.1
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 4.4e-06 57.8 81 33.3
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.8e-06 57.4 88 46.6
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 7.6e-06 57.0 74 33.8
Lalb_Chr06g0161861 Lupinus albus HOM05D004266 ORTHO05D005151 7.6e-06 57.0 71 35.2
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 7.6e-06 57.0 79 31.6
CDE07G0240 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 9.9e-06 56.6 73 34.2


User provided reference genes

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