Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p057155 Quercus lobata HOM05D003359 ORTHO05D004472 2.4e-98 362.1 170 100.0
QL03p057135 Quercus lobata HOM05D003359 ORTHO05D004472 5.7e-92 340.9 200 84.0
QL03p057108 Quercus lobata HOM05D003359 ORTHO05D004472 2.6e-89 332.0 163 96.3
QL03p057097 Quercus lobata HOM05D003359 ORTHO05D004472 2.2e-75 285.8 189 73.5
QL03p056989 Quercus lobata HOM05D003359 ORTHO05D004472 4.8e-67 258.1 189 66.1
MSTRG.7949 Avicennia marina HOM05D003359 ORTHO05D004472 6.1e-62 241.1 186 62.9
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 1.0e-61 240.4 187 62.0
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 3.0e-61 238.8 188 62.2
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 3.0e-61 238.8 197 57.4
COL.COLO4_23483 Corchorus olitorius HOM05D003359 ORTHO05D004472 5.2e-61 238.0 191 59.7
Eucgr.H02479 Eucalyptus grandis HOM05D003359 ORTHO05D004472 5.2e-61 238.0 183 61.7
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 8.8e-61 237.3 183 63.4
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 1.2e-60 236.9 187 60.4
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 1.5e-60 236.5 187 61.5
QL08p013031 Quercus lobata HOM05D003359 ORTHO05D004472 1.5e-60 236.5 187 60.4
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 1.5e-60 236.5 197 57.4
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 2.0e-60 236.1 189 59.8
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 2.0e-60 236.1 183 62.8
Dinv14737 Davidia involucrata HOM05D003359 ORTHO05D004472 5.7e-60 234.6 183 61.7
Migut.K00614 Erythranthe guttata HOM05D003359 ORTHO05D004472 5.7e-60 234.6 187 59.9
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 5.7e-60 234.6 185 60.5
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 9.8e-60 233.8 187 60.4
Duzib268G0493 Durio zibethinus HOM05D003359 ORTHO05D004472 9.8e-60 233.8 198 55.6
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 1.3e-59 233.4 187 61.5
Eucgr.H02478 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.3e-59 233.4 183 60.1
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 1.7e-59 233.0 189 58.2
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 1.7e-59 233.0 186 59.1
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 2.2e-59 232.6 184 62.5
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 3.7e-59 231.9 185 61.1
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 6.3e-59 231.1 187 58.3
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 6.3e-59 231.1 197 55.8
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 6.3e-59 231.1 185 60.5
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 8.3e-59 230.7 183 60.1
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 8.3e-59 230.7 185 61.6
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 8.3e-59 230.7 187 61.5
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 8.3e-59 230.7 197 55.8
Manes.13G022100 Manihot esculenta HOM05D003359 ORTHO05D004472 8.3e-59 230.7 188 60.1
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 1.4e-58 229.9 199 56.3
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 2.4e-58 229.2 187 60.4
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 2.4e-58 229.2 187 59.4
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 3.1e-58 228.8 185 60.5
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 4.1e-58 228.4 185 60.0
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 4.1e-58 228.4 185 60.5
AUR62005279 Chenopodium quinoa HOM05D003359 ORTHO05D004472 5.4e-58 228.0 189 58.2
SalBow2G3613 Salvia bowleyana HOM05D003359 ORTHO05D004472 7.0e-58 227.6 187 59.4
SGA_v2.0_scaffold100G29574 Striga asiatica HOM05D003359 ORTHO05D004472 7.0e-58 227.6 187 58.8
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 9.2e-58 227.3 183 60.7
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 9.2e-58 227.3 183 60.7
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 9.2e-58 227.3 183 60.7
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 9.2e-58 227.3 187 59.4
Ciclev10033489m.g Citrus clementina HOM05D003359 ORTHO05D004472 9.2e-58 227.3 187 56.7
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 9.2e-58 227.3 185 58.9
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.2e-57 226.9 184 58.7
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 1.2e-57 226.9 185 60.0
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 1.6e-57 226.5 185 61.1
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 1.6e-57 226.5 183 57.9
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 2.0e-57 226.1 186 59.1
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 2.7e-57 225.7 185 59.5
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 2.7e-57 225.7 185 59.5
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 2.7e-57 225.7 186 58.1
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 4.5e-57 224.9 187 57.8
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 5.9e-57 224.6 185 60.0
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 7.7e-57 224.2 186 57.5
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 7.7e-57 224.2 185 60.0
unitig_22.g6428 Utricularia gibba HOM05D003359 ORTHO05D004472 7.7e-57 224.2 185 58.4
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 1.3e-56 223.4 186 57.5
Potri.010G048400 Populus trichocarpa HOM05D003359 ORTHO05D004472 1.3e-56 223.4 187 58.3
Nn3g16675 Nelumbo nucifera HOM05D003359 ORTHO05D004472 2.3e-56 222.6 183 57.9
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 2.3e-56 222.6 187 57.2
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 2.9e-56 222.2 183 60.1
Cc11_g15950 Coffea canephora HOM05D003359 ORTHO05D004472 2.9e-56 222.2 183 57.9
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 3.8e-56 221.9 183 59.0
Aqoxy3G01254 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 5.0e-56 221.5 185 57.8
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 5.0e-56 221.5 187 57.2
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 5.0e-56 221.5 183 57.4
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 6.6e-56 221.1 189 56.1
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 6.6e-56 221.1 183 58.5
Aqoxy5G03710 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 8.6e-56 220.7 188 55.3
Medtr8g089725 Medicago truncatula HOM05D003359 ORTHO05D004472 8.6e-56 220.7 188 56.4
Medtr8g089735 Medicago truncatula HOM05D003359 ORTHO05D004472 8.6e-56 220.7 188 56.4
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 1.1e-55 220.3 187 56.7
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.1e-55 220.3 187 57.2
Lj6C814T12 Lonicera japonica HOM05D003359 ORTHO05D004472 1.1e-55 220.3 187 56.1
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 1.1e-55 220.3 189 58.2
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 1.1e-55 220.3 185 57.3
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 1.5e-55 219.9 183 57.9
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 1.9e-55 219.5 187 56.7
Sed0021427 Sechium edule HOM05D003359 ORTHO05D004472 2.5e-55 219.2 183 57.9
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 3.3e-55 218.8 187 56.1
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 3.3e-55 218.8 183 57.4
CDE02G4268 Ceratophyllum demersum HOM05D003359 ORTHO05D004472 4.3e-55 218.4 187 56.1
Ciclev10003125m.g Citrus clementina HOM05D003359 ORTHO05D004472 4.3e-55 218.4 187 55.6
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 5.6e-55 218.0 185 57.8
MELO3C010698.2 Cucumis melo HOM05D003359 ORTHO05D004472 7.3e-55 217.6 183 56.8
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 7.3e-55 217.6 190 55.3
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 7.3e-55 217.6 183 56.8
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea HOM05D003359 ORTHO05D004472 9.5e-55 217.2 188 55.3
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 9.5e-55 217.2 185 57.3
PSO067G0007 Papaver somniferum HOM05D003359 ORTHO05D004472 9.5e-55 217.2 183 56.3
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 9.5e-55 217.2 188 55.3
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 9.5e-55 217.2 187 57.2
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 1.2e-54 216.9 185 57.3
CAN.G272.4 Capsicum annuum HOM05D003359 ORTHO05D004472 1.6e-54 216.5 183 56.3
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 2.1e-54 216.1 185 57.3
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 2.1e-54 216.1 188 55.9
TWI36G0326 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 3.6e-54 215.3 180 56.7
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 4.7e-54 214.9 191 55.5
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 4.7e-54 214.9 205 52.7
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 6.1e-54 214.5 184 56.5
TPR.G6291 Trifolium pratense HOM05D003359 ORTHO05D004472 6.1e-54 214.5 189 55.6
CsaV3_2G025010 Cucumis sativus L. HOM05D003359 ORTHO05D004472 8.0e-54 214.2 183 56.3
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.0e-53 213.8 197 51.8
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 1.8e-53 213.0 185 55.1
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 1.8e-53 213.0 191 57.1
DCAR_029363 Daucus carota HOM05D003359 ORTHO05D004472 2.3e-53 212.6 193 56.0
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 3.0e-53 212.2 184 57.6
ClCG08G017630 Citrullus lanatus HOM05D003359 ORTHO05D004472 4.0e-53 211.8 193 55.4
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 5.2e-53 211.5 167 59.3
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 2.0e-52 209.5 186 55.9
FAN05G1630 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.4e-52 208.8 188 55.3
FAN05G3491 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.4e-52 208.8 188 55.3
FAN14G5485 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.4e-52 208.8 188 55.3
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 4.4e-52 208.4 188 54.8
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 7.5e-52 207.6 198 53.5
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 7.5e-52 207.6 198 53.5
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 1.3e-51 206.8 183 54.1
FAN14G4241 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.7e-51 206.5 186 55.4
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 2.9e-51 205.7 186 54.3
FvH4_6g05560 Fragaria vesca HOM05D003359 ORTHO05D004472 4.9e-51 204.9 186 54.8
FAN09G1504 Fragaria x ananassa HOM05D003359 ORTHO05D004472 4.9e-51 204.9 186 54.8
SEGI_05831 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.1e-50 203.8 182 53.8
HPP92_023373 Vanilla planifolia HOM05D003359 ORTHO05D004472 1.4e-50 203.4 191 49.7
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 1.8e-50 203.0 187 54.5
SEGI_37368 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.2e-49 200.3 187 51.3
SEGI_30194 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 2.3e-48 196.1 184 52.2
Glyma.14G049900 Glycine max HOM05D003359 ORTHO05D004472 5.0e-48 194.9 188 50.0
RcHm_v2.0_Chr3g0454341 Rosa chinensis HOM05D003359 ORTHO05D004472 5.0e-48 194.9 186 53.2
Os01g0518500 Oryza sativa ssp. japonica HOM05D003359 ORTHO05D004472 2.5e-47 192.6 185 49.2
SMO356G0596 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 4.3e-47 191.8 176 50.6
AagrBONN_evm.TU.Sc2ySwM_362.590 Anthoceros agrestis HOM05D003359 ORTHO05D004472 4.7e-46 188.3 196 48.5
Lalb_Chr04g0250081 Lupinus albus HOM05D003359 ORTHO05D004472 6.2e-46 188.0 189 51.3
SMO164G0149 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 1.4e-45 186.8 176 50.0
ATR0824G255 Amborella trichopoda HOM05D003359 ORTHO05D004472 3.4e-44 182.2 182 47.3
AagrBONN_evm.TU.Sc2ySwM_228.5836 Anthoceros agrestis HOM05D003359 ORTHO05D004472 1.3e-43 180.3 183 46.4
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 1.7e-43 179.9 145 60.7
Mapoly0033s0125 Marchantia polymorpha HOM05D003359 ORTHO05D004472 1.7e-43 179.9 182 47.3
Pp3c11_18080 Physcomitrium patens HOM05D003359 ORTHO05D004472 1.4e-42 176.8 182 47.3
SMO238G0039 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 1.6e-41 173.3 184 44.0
LjContig00029g0017310 Lotus japonicus HOM05D003359 ORTHO05D004472 7.8e-41 171.0 190 47.4
Mapoly0016s0175 Marchantia polymorpha HOM05D003359 ORTHO05D004472 1.3e-40 170.2 176 47.2
SMO147G0306 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 8.6e-40 167.5 176 44.3
Nitab4.5_0000229g0100 Nicotiana tabacum HOM05D003359 ORTHO05D004472 4.3e-39 165.2 144 55.6
Phvul.008G214500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 3.6e-38 162.2 171 48.0
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 8.1e-38 161.0 143 55.2
Hund06039 Selenicereus undatus HOM05D003359 ORTHO05D004472 6.8e-37 157.9 144 56.2
VMungo0647G2422 Vigna mungo HOM05D003359 ORTHO05D000417 4.4e-36 155.2 188 43.6
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 7.5e-36 154.5 134 57.5
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 7.5e-36 154.5 134 57.5
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 1.7e-35 153.3 133 57.9
HPP92_023360 Vanilla planifolia HOM05D003359 ORTHO05D004472 4.9e-35 151.8 144 50.0
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 4.1e-34 148.7 134 53.7
HPP92_023372 Vanilla planifolia HOM05D003359 ORTHO05D004472 3.5e-33 145.6 149 48.3
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 3.0e-32 142.5 133 53.4
PSO017G3539 Papaver somniferum HOM05D003359 ORTHO05D004472 5.1e-32 141.7 85 71.8
Lalb_Chr04g0250041 Lupinus albus HOM05D003359 ORTHO05D004472 1.2e-30 137.1 100 65.0
Lalb_Chr04g0250061 Lupinus albus HOM05D003359 ORTHO05D004472 2.8e-30 136.0 100 65.0
FAN04G1499 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.7e-27 126.7 78 71.8
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.3e-24 116.3 92 60.9
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 3.3e-23 112.5 126 45.2
Glyma.02G267700 Glycine max HOM05D003359 ORTHO05D004472 1.6e-22 110.2 119 44.5
FAN12G0307 Fragaria x ananassa HOM05D002480 ORTHO05D003145 9.3e-18 94.4 86 55.8
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 1.7e-16 90.1 70 60.0
Cc01_g04790 Coffea canephora HOM05D003359 ORTHO05D004472 5.6e-15 85.1 84 48.8
Aqoxy515s001 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 8.1e-14 81.3 63 63.5
Lj3C275T6 Lonicera japonica HOM05D003359 ORTHO05D004472 1.8e-13 80.1 121 39.7
Lalb_Chr04g0250101 Lupinus albus HOM05D003359 ORTHO05D004472 2.4e-13 79.7 57 59.6
VMungo1383G2745 Vigna mungo HOM05D003359 ORTHO05D005153 6.4e-11 71.6 58 53.4
Lalb_Chr04g0250091 Lupinus albus HOM05D003359 ORTHO05D004472 7.1e-10 68.2 54 59.3
arahy.Tifrunner.gnm1.ann1.H4Q06R Arachis hypogaea HOM05D003359 ORTHO05D004472 6.2e-06 55.1 32 75.0


User provided reference genes

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