Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 0.0e+00 1169.5 628 100.0
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 9.6e-270 933.3 629 79.5
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.1e-261 905.6 627 75.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 3.0e-255 885.2 635 77.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 6.2e-253 877.5 627 73.5
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 6.9e-252 874.0 615 74.0
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.3e-250 869.8 629 72.8
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 4.6e-248 861.3 626 71.7
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.8e-247 859.4 634 71.8
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.3e-246 855.1 636 70.4
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 4.3e-246 854.7 628 71.5
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 8.2e-245 850.5 627 71.6
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 6.9e-244 847.4 631 72.9
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 9.0e-244 847.0 637 73.9
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.5e-243 846.3 628 71.7
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 3.4e-243 845.1 627 71.3
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.4e-243 845.1 636 69.5
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.3e-242 843.2 636 69.7
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.1e-239 831.2 635 69.3
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.1e-238 830.1 629 70.1
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 5.7e-238 827.8 638 69.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.6e-237 826.2 629 70.0
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.9e-235 817.8 665 66.5
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.5e-230 802.4 617 69.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 3.3e-230 802.0 613 70.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.7e-229 799.7 628 68.9
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 2.2e-229 799.3 626 67.3
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 6.3e-229 797.7 644 67.9
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.1e-228 797.0 630 69.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 3.1e-228 795.4 567 73.7
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.1e-228 795.4 629 66.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 6.9e-228 794.3 628 69.1
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.1e-228 793.9 636 67.1
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 7.7e-227 790.8 628 68.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.5e-226 787.3 627 67.3
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.7e-224 782.3 667 64.5
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.3e-223 779.2 627 67.9
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 2.3e-223 779.2 628 65.9
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.9e-223 778.5 629 67.1
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.1e-223 778.1 633 67.6
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 8.8e-223 777.3 632 66.9
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-222 776.9 630 65.4
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.5e-222 776.5 631 66.7
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.6e-222 775.8 629 66.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 9.7e-222 773.9 628 67.0
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.4e-220 770.0 630 66.5
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.9e-220 767.7 636 67.1
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.4e-217 760.0 649 64.7
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 9.4e-217 757.3 630 65.6
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.2e-216 756.9 627 66.8
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.7e-216 755.7 630 65.9
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 4.7e-216 755.0 613 67.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.4e-215 753.4 627 66.2
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.8e-215 753.1 631 65.1
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.9e-215 751.9 634 65.9
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.8e-213 745.0 640 64.7
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.0e-211 739.6 653 62.5
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.6e-211 739.2 656 62.5
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.5e-211 738.4 634 63.7
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 7.7e-211 737.6 641 63.8
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.7e-210 736.5 630 64.0
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 2.2e-210 736.1 613 63.8
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.2e-209 732.3 629 64.2
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.5e-209 731.5 630 64.9
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 1.6e-208 729.9 630 64.4
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 6.7e-207 724.5 637 61.1
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.3e-205 720.3 638 62.7
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.2e-205 719.5 630 62.5
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-204 716.1 634 62.6
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 4.5e-203 711.8 580 68.3
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 7.7e-203 711.1 635 62.7
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 2.9e-202 709.1 635 62.2
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 8.5e-202 707.6 629 61.5
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.9e-201 706.4 628 63.1
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.9e-201 706.4 628 61.8
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 2.1e-200 703.0 640 60.8
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.7e-200 702.6 628 61.5
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.6e-200 702.2 654 59.0
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 4.7e-200 701.8 628 61.5
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.4e-199 700.3 612 63.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-199 699.5 637 61.2
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 5.2e-199 698.4 635 61.4
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 5.2e-199 698.4 540 67.6
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.2e-198 697.2 627 61.4
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.8e-196 689.9 638 63.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 7.0e-196 688.0 637 60.9
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 2.7e-195 686.0 643 62.1
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 8.6e-194 681.0 629 59.5
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 3.3e-193 679.1 578 63.5
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.3e-191 672.9 501 70.7
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 4.4e-190 668.7 566 63.6
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.8e-189 666.0 609 60.1
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.9e-189 665.2 576 63.4
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.2e-187 660.6 639 58.8
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.1e-184 649.8 637 57.6
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.8e-184 649.4 630 59.0
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 3.0e-183 646.0 536 64.2
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.8e-183 644.8 601 60.1
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.7e-181 640.2 633 58.6
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 5.2e-175 618.6 633 58.0
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.9e-169 600.1 574 59.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 2.5e-169 599.7 613 58.7
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 8.1e-168 594.7 632 55.5
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 7.8e-163 578.2 529 61.1
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.9e-148 530.4 411 67.9
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 2.4e-148 530.0 338 78.4
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 5.6e-145 518.8 628 50.8
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.3e-145 518.5 513 56.3
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.0e-143 512.7 638 50.8
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.0e-138 498.0 337 76.0
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 6.2e-136 488.8 531 53.1
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 8.1e-136 488.4 319 76.5
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.2e-134 484.6 565 50.4
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 2.2e-133 480.3 336 72.0
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.8e-133 479.6 412 64.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.1e-127 461.5 449 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.9e-100 370.9 657 38.7
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-98 365.2 402 53.0
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.2e-96 357.5 279 69.2
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.5e-93 345.9 294 67.0
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 9.7e-89 332.0 386 53.6
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 5.3e-87 326.2 196 85.7
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 3.8e-85 320.1 676 35.9
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-82 310.8 360 54.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 6.8e-82 309.3 271 63.1
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.1e-79 302.0 274 61.3
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.6e-78 298.1 245 63.3
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.3e-77 295.0 242 66.1
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.2e-76 290.0 318 52.8
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.8e-75 287.3 248 63.3
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.4e-71 275.0 271 55.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 1.7e-69 268.1 226 59.3
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.2e-67 261.9 277 52.3
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.0e-65 254.6 311 50.8
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.3e-61 241.1 255 54.5
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.6e-59 235.0 273 53.8
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 4.7e-59 233.4 270 51.9
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 2.0e-57 228.0 665 30.5
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.1e-50 205.7 262 48.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 7.6e-49 199.5 119 84.0
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-48 198.4 261 46.0
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 2.2e-48 198.0 106 92.5
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.1e-47 193.7 209 56.9
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-45 188.7 163 62.0
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.3e-45 188.0 149 69.1
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.4e-42 177.9 149 63.1
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.8e-41 173.3 144 67.4
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 1.7e-40 171.8 272 40.8
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.4e-40 169.9 110 77.3
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.6e-33 147.9 237 39.2
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.6e-33 146.4 75 98.7
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-32 145.2 75 98.7
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.2e-32 144.8 81 92.6
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.8e-32 144.1 160 53.8
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.6e-30 137.1 217 39.6
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-29 135.2 157 48.4
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 2.3e-29 134.8 126 61.9
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 8.7e-29 132.9 139 54.7
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.3e-27 129.0 143 50.3
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.5e-25 122.1 316 34.8
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.7e-24 118.6 113 56.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 9.3e-23 112.8 398 27.9
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 7.9e-22 109.8 125 44.8
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.8e-21 108.6 252 32.1
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 7.4e-20 103.2 183 37.7
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 6.2e-19 100.1 77 64.9
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.0e-16 92.8 123 45.5
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.7e-16 92.0 141 43.3
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 5.1e-13 80.5 119 45.4
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 4.5e-09 67.4 63 57.1
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 5.8e-09 67.0 54 66.7
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 2.2e-08 65.1 140 41.4
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 8.4e-08 63.2 65 58.5
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 1.9e-07 62.0 60 61.7
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 4.2e-07 60.8 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 1.2e-06 59.3 38 86.8
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.1e-06 58.5 72 47.2
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.1e-06 58.5 73 46.6
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.1e-06 58.5 72 47.2
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 4.6e-06 57.4 73 45.2
MBI16_g19191_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.9e-06 56.6 72 45.8


User provided reference genes

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