Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 0.0e+00 1227.2 662 100.0
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.9e-232 808.9 659 69.7
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 7.1e-231 804.3 659 69.2
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 6.2e-227 791.2 661 69.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 4.0e-226 788.5 660 68.2
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.5e-225 786.6 660 69.7
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 4.9e-224 781.6 660 68.0
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.4e-223 778.1 658 67.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 5.4e-223 778.1 663 67.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.5e-222 775.4 661 68.4
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.0e-221 773.9 658 67.3
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 6.6e-221 771.2 662 66.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 3.3e-220 768.8 662 67.4
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 2.1e-219 766.1 666 67.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 6.2e-219 764.6 662 66.9
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.1e-218 762.3 662 65.7
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.6e-217 759.2 663 67.1
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.4e-217 758.8 664 66.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 2.2e-216 756.1 660 66.4
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 6.4e-216 754.6 662 65.4
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.4e-216 754.6 665 66.2
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.4e-215 753.4 662 66.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.2e-215 752.3 661 65.8
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 4.2e-215 751.9 658 67.2
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.2e-214 750.4 660 65.6
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.6e-214 750.0 661 66.1
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.1e-214 749.6 661 64.8
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 4.6e-214 748.4 661 65.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 7.8e-214 747.7 662 66.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 3.0e-213 745.7 659 66.6
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 3.9e-213 745.3 663 65.5
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.1e-213 745.0 661 64.6
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.1e-213 745.0 661 64.6
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.7e-213 744.2 661 64.3
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.9e-212 743.0 658 66.0
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 9.6e-212 740.7 661 64.3
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.4e-210 736.9 666 64.3
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.8e-210 736.5 661 63.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 4.0e-210 735.3 658 64.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 4.5e-209 731.9 662 63.0
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 4.5e-209 731.9 662 65.9
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 4.5e-209 731.9 662 65.9
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.9e-208 729.2 661 64.0
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.1e-207 727.2 662 64.2
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 2.4e-207 726.1 663 66.1
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 6.0e-206 721.5 656 64.5
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 9.6e-204 714.1 663 62.3
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.1e-202 710.7 662 62.4
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.4e-202 709.5 639 64.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 5.3e-202 708.4 664 64.6
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 6.9e-202 708.0 674 60.5
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-201 706.8 663 62.0
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.9e-201 704.1 663 61.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.8e-200 702.2 662 61.8
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 4.6e-198 695.3 657 59.8
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.3e-197 693.7 660 63.3
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 6.7e-197 691.4 657 61.9
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.5e-196 690.3 665 62.9
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.3e-195 687.2 656 60.2
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 8.4e-192 674.5 679 62.9
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.5e-191 672.9 660 59.8
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-190 669.8 663 59.6
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 7.9e-190 667.9 660 60.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 7.9e-190 667.9 660 60.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 3.0e-189 666.0 660 60.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 6.7e-189 664.8 656 60.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-187 660.6 663 58.8
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.3e-187 658.3 657 60.1
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 1.1e-186 657.5 665 57.6
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.0e-185 653.3 670 60.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.6e-185 652.9 670 60.4
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.7e-184 650.2 659 57.7
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.7e-184 650.2 658 58.4
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.2e-184 649.8 658 59.1
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.2e-184 649.8 658 59.3
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.8e-184 649.0 660 60.6
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.5e-183 646.4 660 58.3
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 7.2e-183 644.8 661 60.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 9.4e-183 644.4 665 58.2
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.2e-182 644.0 660 59.8
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.7e-182 642.9 658 57.4
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 7.9e-182 641.3 669 57.5
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.4e-181 640.6 662 57.1
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.8e-181 640.2 659 56.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.8e-181 640.2 659 56.8
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.8e-181 640.2 660 59.8
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.9e-181 639.0 665 57.4
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.7e-181 638.3 615 61.3
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 9.7e-180 634.4 662 58.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-179 634.0 658 56.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 6.3e-179 631.7 657 59.5
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.2e-179 631.3 660 57.1
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.1e-178 629.4 663 57.5
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 5.3e-178 628.6 659 56.9
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.0e-177 626.7 664 60.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.9e-177 625.2 660 56.7
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 5.9e-177 625.2 671 56.0
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 7.7e-177 624.8 662 58.8
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.3e-176 624.0 659 55.7
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.2e-176 623.2 671 56.6
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.0e-176 622.1 612 59.6
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 5.0e-176 622.1 670 54.5
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 8.5e-176 621.3 657 56.3
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 8.5e-176 621.3 660 55.6
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.1e-175 620.9 667 56.1
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.1e-175 620.9 657 56.2
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 7.2e-175 618.2 659 55.8
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 8.8e-173 611.3 661 55.2
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-172 610.5 546 66.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-172 610.5 546 66.3
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 5.7e-172 608.6 656 59.1
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 7.4e-172 608.2 657 54.8
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 9.7e-172 607.8 538 65.6
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-171 607.1 661 58.2
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.2e-171 606.7 682 55.0
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.8e-170 603.6 656 55.6
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 9.1e-170 601.3 667 54.9
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 9.1e-170 601.3 666 53.9
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.5e-169 600.5 674 53.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 5.9e-169 598.6 659 56.1
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.3e-168 597.4 666 55.4
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.2e-168 596.7 666 54.8
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.9e-168 596.3 659 54.0
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.9e-168 596.3 681 54.9
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.5e-167 592.0 686 55.4
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 2.7e-166 589.7 659 53.9
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.8e-163 579.7 677 55.5
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.7e-163 579.3 657 54.6
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 8.2e-163 578.2 681 53.9
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.4e-162 576.6 660 54.5
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 4.1e-162 575.9 661 55.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 4.1e-162 575.9 660 53.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-161 573.9 659 53.3
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 5.0e-160 568.9 659 54.9
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.9e-159 567.0 652 53.7
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.0e-157 561.2 661 52.0
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 6.8e-157 558.5 673 52.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 6.8e-157 558.5 662 51.4
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 7.0e-154 548.5 664 55.4
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.7e-153 545.0 651 53.1
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.2e-149 532.3 651 53.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.8e-148 528.1 660 50.5
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.7e-144 517.3 661 48.0
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 5.0e-144 515.8 661 47.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.8e-142 510.0 668 50.3
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 7.8e-137 491.9 617 49.4
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 6.2e-126 455.7 539 51.0
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.9e-123 446.8 401 65.1
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.9e-114 417.5 671 43.1
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 3.5e-113 413.3 404 62.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.8e-110 403.7 400 61.0
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.8e-110 403.7 671 42.5
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.3e-107 394.8 616 42.9
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 8.7e-104 382.1 429 54.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 4.0e-101 373.2 660 41.5
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.3e-88 331.6 675 39.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 8.4e-83 312.4 551 42.5
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 8.2e-78 295.8 539 39.5
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.2e-76 292.0 231 69.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.0e-72 278.9 624 36.4
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.3e-72 278.5 312 53.8
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.4e-64 251.9 652 36.0
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 4.3e-63 246.9 423 42.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 5.0e-51 206.8 258 45.0
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 8.0e-41 172.9 224 52.2
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.0e-32 146.0 108 64.8
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 3.1e-29 134.4 76 82.9
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 7.2e-26 123.2 126 58.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 2.3e-24 118.2 155 50.3
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.2e-24 117.1 109 54.1
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.6e-20 105.5 88 61.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.1e-17 95.1 130 41.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.3e-16 91.7 74 60.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.4e-15 87.4 78 62.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-14 84.7 61 65.6
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-11 75.9 46 73.9
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.1e-08 66.2 82 50.0
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 5.2e-08 63.9 596 22.7


User provided reference genes

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