Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p009259 Quercus lobata HOM05D007256 ORTHO05D009109 3.4e-88 328.2 150 100.0
QL03p009011 Quercus lobata HOM05D007256 ORTHO05D009109 3.5e-85 318.2 153 96.7
QL03p009202 Quercus lobata HOM05D007256 ORTHO05D009109 3.8e-84 314.7 153 95.4
Haze_04019 Corylus avellana HOM05D007256 ORTHO05D009109 4.7e-66 254.6 154 78.6
CANSAT54G0501 Cannabis sativa HOM05D007256 ORTHO05D009109 3.5e-61 238.4 154 74.0
TAR362G0938 Trochodendron aralioides HOM05D007256 ORTHO05D009109 8.6e-60 233.8 153 71.9
GSVIVG01031300001 Vitis vinifera HOM05D007256 ORTHO05D009109 1.6e-58 229.6 154 71.4
Prupe.6G307100 Prunus persica HOM05D007256 ORTHO05D009109 4.4e-56 221.5 154 71.4
FAN09G0386 Fragaria x ananassa HOM05D007256 ORTHO05D009109 7.6e-56 220.7 154 70.1
Cfa006739 Carpinus fangiana HOM05D007256 ORTHO05D009109 2.9e-55 218.8 153 68.6
CiPaw.07G034000 Carya illinoinensis HOM05D007256 ORTHO05D009109 3.8e-55 218.4 153 68.0
RcHm_v2.0_Chr3g0458031 Rosa chinensis HOM05D007256 ORTHO05D009109 3.8e-55 218.4 154 68.8
FAN02G0906 Fragaria x ananassa HOM05D007256 ORTHO05D009109 4.9e-55 218.0 154 69.5
Ciclev10012993m.g Citrus clementina HOM05D007256 ORTHO05D009109 3.9e-52 208.4 157 64.3
FvH4_6g08160 Fragaria vesca HOM05D007256 ORTHO05D009109 1.9e-51 206.1 154 66.9
Manes.08G108700 Manihot esculenta HOM05D007256 ORTHO05D009109 5.6e-51 204.5 157 63.1
Atru.chr12.1603 Acer truncatum HOM05D007256 ORTHO05D009109 2.4e-49 199.1 180 58.9
PSO761G0366 Papaver somniferum HOM05D007256 ORTHO05D009109 3.1e-49 198.7 155 61.9
TWI12G0874 Tripterygium wilfordii HOM05D007256 ORTHO05D009109 1.2e-48 196.8 160 61.2
FAN14G3866 Fragaria x ananassa HOM05D007256 ORTHO05D009109 1.5e-48 196.4 153 64.7
Eucgr.B01795 Eucalyptus grandis HOM05D007256 ORTHO05D009109 6.4e-47 191.0 157 63.7
Sabra13G0003900 Salix brachista HOM05D007256 ORTHO05D009109 1.9e-46 189.5 157 62.4
CsaV3_1G037970 Cucumis sativus L. HOM05D007256 ORTHO05D009109 3.2e-46 188.7 158 58.2
PSO210G0513 Papaver somniferum HOM05D007256 ORTHO05D009109 4.2e-46 188.3 155 58.7
ClCG03G017800 Citrullus lanatus HOM05D007256 ORTHO05D009109 7.1e-46 187.6 157 59.2
Nn4g25434 Nelumbo nucifera HOM05D007256 ORTHO05D009109 7.1e-46 187.6 154 59.1
Potri.013G004801 Populus trichocarpa HOM05D007256 ORTHO05D009109 9.3e-46 187.2 158 61.4
Oeu060662.1 Olea europaea HOM05D007256 ORTHO05D009109 3.0e-44 182.2 159 54.7
MELO3C015247.2 Cucumis melo HOM05D000487 ORTHO05D000405 1.9e-43 179.5 154 58.4
Thecc.05G327400 Theobroma cacao HOM05D007256 ORTHO05D009109 2.5e-43 179.1 153 58.2
MD12G1202300 Malus domestica HOM05D007256 ORTHO05D009109 9.6e-43 177.2 154 60.4
Duzib177G1002 Durio zibethinus HOM05D007256 ORTHO05D009109 2.1e-42 176.0 154 57.8
Duzib177G0019 Durio zibethinus HOM05D007256 ORTHO05D009109 3.6e-42 175.3 159 56.6
Hma1.2p1_0052F.1_g030520 Hydrangea macrophylla HOM05D007256 ORTHO05D009109 3.6e-42 175.3 161 54.0
Lsat_1_v5_gn_2_17440 Lactuca sativa HOM05D007256 ORTHO05D009109 1.4e-41 173.3 153 57.5
Nitab4.5_0002783g0030 Nicotiana tabacum HOM05D007256 ORTHO05D009109 4.0e-41 171.8 156 57.1
Solyc01g100990.3 Solanum lycopersicum HOM05D007256 ORTHO05D009109 5.3e-41 171.4 158 55.7
Sopen01g044450 Solanum pennellii HOM05D007256 ORTHO05D009109 5.3e-41 171.4 158 55.7
ECA238G0534 Erigeron canadensis HOM05D007256 ORTHO05D009109 2.0e-40 169.5 159 54.7
COL.COLO4_05498 Corchorus olitorius HOM05D007256 ORTHO05D009109 2.6e-40 169.1 153 58.2
Nitab4.5_0005710g0050 Nicotiana tabacum HOM05D007256 ORTHO05D009109 7.6e-40 167.5 155 55.5
DCAR_002110 Daucus carota HOM05D007256 ORTHO05D009109 9.9e-40 167.2 153 54.9
Gohir.A13G030200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 2.2e-39 166.0 153 54.9
Gohir.D13G028200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 3.8e-39 165.2 153 54.9
Gorai.013G032200 Gossypium raimondii HOM05D007256 ORTHO05D009109 3.8e-39 165.2 153 54.9
PGSC0003DMG400002748 Solanum tuberosum HOM05D007256 ORTHO05D009109 4.9e-39 164.9 157 53.5
Peaxi162Scf00357g00431 Petunia axillaris HOM05D007256 ORTHO05D009109 8.4e-39 164.1 157 54.8
CAN.G1374.8 Capsicum annuum HOM05D007256 ORTHO05D009109 1.1e-38 163.7 157 52.9
EL10Ac4g09530 Beta vulgaris HOM05D007256 ORTHO05D009109 5.4e-38 161.4 156 51.9
Aqoxy2G02591 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 1.2e-37 160.2 153 52.3
Migut.B00859 Erythranthe guttata HOM05D007256 ORTHO05D009109 2.7e-37 159.1 158 55.1
Cpa.g.sc48.207 Carica papaya HOM05D007256 ORTHO05D009109 3.5e-37 158.7 155 54.8
FAN05G3272 Fragaria x ananassa HOM05D000487 ORTHO05D000405 3.5e-37 158.7 125 64.8
Hund07289 Selenicereus undatus HOM05D007256 ORTHO05D009109 1.0e-36 157.1 240 39.6
MSTRG.20366 Avicennia marina HOM05D007256 ORTHO05D009109 1.3e-36 156.8 158 51.9
AUR62006795 Chenopodium quinoa HOM05D007256 ORTHO05D009109 1.3e-36 156.8 154 51.3
Cc02_g35540 Coffea canephora HOM05D007256 ORTHO05D009109 2.5e-35 152.5 163 52.1
HanXRQChr14g0433581 Helianthus annuus HOM05D007256 ORTHO05D009109 3.3e-35 152.1 154 53.2
SGA_v2.0_scaffold438G51636 Striga asiatica HOM05D007256 ORTHO05D009109 3.3e-35 152.1 157 51.0
AL6G38610 Arabidopsis lyrata HOM05D007256 ORTHO05D009109 9.6e-35 150.6 154 50.0
Zm00001eb333750 Zea mays HOM05D007256 ORTHO05D009109 1.3e-34 150.2 167 48.5
Thhalv10005088m.g Eutrema salsugineum HOM05D007256 ORTHO05D009109 1.6e-34 149.8 154 50.6
SalBow7G1589 Salvia bowleyana HOM05D007256 ORTHO05D009109 2.8e-34 149.1 177 48.0
BcaB04g19715 Brassica carinata HOM05D007256 ORTHO05D009109 2.4e-33 146.0 159 47.2
Sed0013353 Sechium edule HOM05D007256 ORTHO05D009109 1.2e-32 143.7 158 50.6
A09p05700 Brassica napus HOM05D007256 ORTHO05D009109 2.0e-32 142.9 163 47.2
CDE08G0276 Ceratophyllum demersum HOM05D007256 ORTHO05D009109 6.4e-31 137.9 154 50.6
Lj5g0000046 Lotus japonicus HOM05D007256 ORTHO05D009109 6.4e-31 137.9 159 48.4
TPR.G2616 Trifolium pratense HOM05D007256 ORTHO05D009109 6.4e-31 137.9 144 48.6
Gorai.001G184000 Gossypium raimondii HOM05D007256 ORTHO05D009109 8.4e-31 137.5 153 49.7
Lalb_Chr02g0147641 Lupinus albus HOM05D007256 ORTHO05D009109 1.1e-30 137.1 144 46.5
Os01g0252200 Oryza sativa ssp. japonica HOM05D007256 ORTHO05D009109 1.9e-30 136.3 169 44.4
unitig_699.g19800 Utricularia gibba HOM05D007256 ORTHO05D009109 1.9e-30 136.3 178 44.9
AT5G26749 Arabidopsis thaliana HOM05D007256 ORTHO05D009109 2.4e-30 136.0 174 43.1
BcaC04g23634 Brassica carinata HOM05D007256 ORTHO05D009109 4.2e-30 135.2 158 45.6
C09p06290 Brassica napus HOM05D007256 ORTHO05D009109 4.2e-30 135.2 158 45.6
TPR.G2644 Trifolium pratense HOM05D007256 ORTHO05D009109 1.6e-29 133.3 151 46.4
THA.LOC104821748 Tarenaya hassleriana HOM05D007256 ORTHO05D009109 2.1e-29 132.9 153 49.0
arahy.Tifrunner.gnm1.ann1.Q851GZ Arachis hypogaea HOM05D007256 ORTHO05D009109 3.5e-29 132.1 158 43.7
BraA09t36210Z Brassica rapa HOM05D007256 ORTHO05D009109 3.5e-29 132.1 180 42.2
Ca_10190_v3 Cicer arietinum L. HOM05D007256 ORTHO05D009109 3.5e-29 132.1 153 47.1
arahy.Tifrunner.gnm1.ann1.H7RZSB Arachis hypogaea HOM05D007256 ORTHO05D009109 4.6e-29 131.7 158 45.6
PGR042G2181 Punica granatum HOM05D007256 ORTHO05D009109 6.0e-29 131.3 120 55.0
Sp2g21240 Schrenkiella parvula HOM05D007256 ORTHO05D009109 6.0e-29 131.3 153 46.4
Aa31LG11G9900 Aethionema arabicum HOM05D007256 ORTHO05D009109 6.7e-28 127.9 156 46.8
VMungo0720G0365 Vigna mungo HOM05D007256 ORTHO05D009109 8.7e-28 127.5 153 47.1
Phvul.007G203900 Phaseolus vulgaris HOM05D007256 ORTHO05D009109 1.1e-27 127.1 153 47.1
HPP92_001218 Vanilla planifolia HOM05D007256 ORTHO05D009109 1.9e-27 126.3 157 45.2
Medtr1g084750 Medicago truncatula HOM05D007256 ORTHO05D009109 2.1e-26 122.9 153 45.1
Glyma.10G144700 Glycine max HOM05D007256 ORTHO05D009109 3.7e-26 122.1 153 46.4
BolC9t53549H Brassica oleracea HOM05D007256 ORTHO05D009109 8.2e-26 120.9 178 42.1
Gohir.D01G139700 Gossypium hirsutum HOM05D007256 ORTHO05D009109 2.4e-25 119.4 126 49.2
SEGI_23053 Sequoiadendron giganteum HOM05D007256 ORTHO05D009109 4.0e-25 118.6 158 41.8
ATR0693G354 Amborella trichopoda HOM05D007256 ORTHO05D009109 5.3e-25 118.2 123 50.4
Psat1g134200 Pisum sativum HOM05D007256 ORTHO05D009109 5.3e-25 118.2 153 43.1
Sc09g0002500 Simmondsia chinensis HOM05D007256 ORTHO05D009109 5.8e-24 114.8 105 52.4
Mapoly0054s0011 Marchantia polymorpha HOM05D007256 ORTHO05D009109 2.9e-23 112.5 153 40.5
Pp3c18_1910 Physcomitrium patens HOM05D007256 ORTHO05D009109 1.6e-21 106.7 153 40.5
vmacro19770 Vaccinium macrocarpon HOM05D007256 ORTHO05D009109 1.3e-18 97.1 244 30.7
Carub.0006s2440 Capsella rubella HOM05D007256 ORTHO05D009109 2.2e-18 96.3 115 45.2
Ah.10g027130 Amaranthus hybridus HOM05D007256 ORTHO05D009109 3.4e-16 89.0 69 60.9
Aqoxy4G00797 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 3.4e-16 89.0 150 35.3
Rhsim05G0121300 Rhododendron simsii HOM05D007256 ORTHO05D009109 1.6e-13 80.1 70 60.0
Gohir.D01G148000 Gossypium hirsutum HOM05D002544 ORTHO05D009109 1.8e-09 66.6 71 52.1
HPP92_001189 Vanilla planifolia HOM05D007256 ORTHO05D009109 5.3e-09 65.1 43 62.8
SHI06526 Sapria himalayana HOM05D007256 ORTHO05D009109 2.6e-08 62.8 44 59.1
Nitab4.5_0000185g0380 Nicotiana tabacum HOM05D007256 ORTHO05D009109 3.8e-07 58.9 37 67.6
CARHR186830 Cardamine hirsuta HOM05D007256 ORTHO05D009109 8.5e-07 57.8 41 63.4


User provided reference genes

Program Settings