Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 6.7e-146 521.2 372 100.0
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.5e-126 455.3 373 88.2
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.8e-119 433.3 400 71.5
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 6.5e-117 424.9 372 84.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.1e-116 424.1 373 85.8
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 4.2e-116 422.2 373 70.8
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 4.2e-116 422.2 373 85.5
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.5e-116 421.8 373 84.2
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.2e-116 421.4 373 85.5
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.6e-115 420.2 373 86.3
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.8e-115 419.5 372 73.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.4e-114 417.2 375 82.7
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.0e-114 416.0 373 84.7
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 2.6e-113 412.9 372 84.7
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 3.4e-113 412.5 374 80.7
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 3.4e-113 412.5 374 69.8
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 8.3e-112 407.9 374 73.5
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.4e-111 406.4 373 84.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 7.0e-111 404.8 372 84.1
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.2e-110 404.1 376 79.3
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 7.3e-108 394.8 377 83.0
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.2e-107 394.0 374 81.8
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.8e-107 392.9 373 80.7
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 3.6e-107 392.5 373 80.7
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 3.6e-107 392.5 372 82.5
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 8.0e-107 391.3 377 83.6
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.0e-106 391.0 373 79.9
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.0e-106 389.4 375 79.7
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 5.2e-106 388.7 374 79.7
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 6.8e-106 388.3 373 82.0
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 8.9e-106 387.9 368 81.2
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.5e-105 387.1 375 80.0
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 5.7e-105 385.2 375 78.1
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 9.8e-105 384.4 375 79.5
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.7e-104 383.6 373 81.5
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 6.4e-104 381.7 381 82.4
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 8.3e-104 381.3 396 69.7
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.4e-103 380.6 375 78.9
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.2e-103 379.4 377 78.8
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.2e-103 379.4 377 78.8
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 2.7e-102 376.3 372 80.9
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 3.5e-102 375.9 382 78.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.3e-101 374.0 367 80.9
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.0e-101 372.9 370 79.2
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 5.0e-101 372.1 375 80.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.1e-100 370.9 372 79.8
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.1e-100 370.9 345 82.3
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.9e-100 370.2 373 79.4
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.9e-100 370.2 373 70.0
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.2e-99 367.5 372 77.7
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.4e-98 364.0 362 78.7
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 8.9e-98 361.3 362 78.7
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 8.9e-98 361.3 373 76.4
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 1.7e-96 357.1 371 76.5
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 1.1e-95 354.4 384 72.1
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.6e-94 350.5 380 78.7
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 2.3e-93 346.7 375 75.2
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.5e-92 344.0 365 72.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.5e-92 344.0 367 77.9
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 3.6e-91 339.3 367 71.9
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.2e-91 338.6 374 74.6
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 8.1e-91 338.2 343 75.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.8e-90 335.1 334 77.8
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 2.6e-89 333.2 346 82.9
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.6e-89 333.2 326 73.9
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.7e-88 329.3 366 73.2
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.1e-87 327.8 346 81.8
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 2.1e-86 323.6 378 75.7
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.0e-85 319.7 369 69.4
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 8.1e-83 311.6 487 41.9
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 3.8e-80 302.8 354 74.6
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.1e-79 301.2 358 71.2
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.6e-78 297.4 387 67.2
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 2.1e-78 297.0 381 70.1
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 2.3e-77 293.5 379 71.0
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 5.1e-77 292.4 360 71.7
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.1e-76 291.2 378 70.9
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.9e-76 290.4 371 68.2
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 4.7e-75 285.8 363 68.0
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-74 284.6 372 66.7
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.4e-74 283.5 387 66.7
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 3.1e-74 283.1 363 67.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 3.1e-74 283.1 363 67.8
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 6.9e-74 282.0 371 67.4
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.6e-73 280.0 378 69.0
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.6e-73 280.0 378 69.8
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 7.6e-73 278.5 377 67.9
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.2e-72 276.9 377 67.9
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.9e-72 276.6 375 66.4
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 2.4e-71 273.5 366 70.8
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 3.5e-70 269.6 345 69.9
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.7e-69 267.3 362 66.9
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.7e-69 267.3 383 69.5
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.1e-68 264.6 334 72.2
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.3e-68 262.7 382 64.1
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 9.6e-68 261.5 380 46.8
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.4e-66 257.7 378 63.2
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 5.8e-65 252.3 394 52.8
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.2e-64 250.4 363 64.2
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.9e-64 250.0 392 52.3
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.1e-63 248.1 318 72.6
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.3e-63 245.0 278 77.0
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 2.1e-62 243.8 377 64.7
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 2.7e-62 243.4 319 70.2
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.8e-58 230.7 326 71.5
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 5.3e-58 229.2 173 72.8
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 6.9e-58 228.8 328 71.0
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 6.4e-56 222.2 270 73.7
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.9e-55 220.7 180 67.8
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 2.4e-55 220.3 376 60.4
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.6e-54 217.6 167 68.9
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 8.2e-51 205.3 362 60.2
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 5.3e-50 202.6 309 64.7
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.0e-48 198.4 367 52.3
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 4.6e-46 189.5 307 65.1
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.2e-43 180.6 172 59.9
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 4.8e-43 179.5 132 86.4
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.8e-43 179.5 377 53.1
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 4.1e-42 176.4 362 56.1
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.9e-39 167.5 132 76.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-38 164.5 132 75.8
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.3e-37 160.6 368 51.4
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.9e-36 157.5 312 58.0
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.5e-36 157.1 301 59.8
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 7.4e-28 129.0 155 48.4
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.2e-27 127.5 132 63.6
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 5.9e-25 119.4 260 59.6
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 6.5e-24 115.9 243 62.6
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 8.5e-24 115.5 358 49.7
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 8.5e-24 115.5 115 62.6
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.5e-20 104.8 102 57.8
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 5.0e-16 89.7 229 52.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.1e-14 84.3 58 89.7
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 2.7e-14 84.0 411 44.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 3.6e-14 83.6 56 92.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-13 81.3 56 91.1
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.8e-10 71.2 84 67.9


User provided reference genes

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