Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p094444 Quercus lobata HOM05D027359 ORTHO05D001288 2.4e-116 422.2 214 100.0
QL04p002716 Quercus lobata HOM05D027359 ORTHO05D001288 4.3e-81 305.1 200 77.5
QL12p005699 Quercus lobata HOM05D027359 ORTHO05D001288 1.8e-63 246.5 200 68.5
QL08p016270 Quercus lobata HOM05D027359 ORTHO05D001288 1.5e-60 236.9 150 82.7
QL01p030461 Quercus lobata HOM05D000196 ORTHO05D001288 1.2e-46 190.7 153 69.9
FvH4_3g36890 Fragaria vesca HOM05D000196 ORTHO05D001288 2.9e-24 116.3 145 53.1
Prupe.6G071400 Prunus persica HOM05D000196 ORTHO05D001288 4.9e-24 115.5 159 50.3
FAN25G3764 Fragaria x ananassa HOM05D000196 ORTHO05D001288 1.4e-23 114.0 145 52.4
FAN16G3506 Fragaria x ananassa HOM05D000196 ORTHO05D001288 1.9e-23 113.6 145 52.4
FAN11G0260 Fragaria x ananassa HOM05D000196 ORTHO05D001288 2.4e-23 113.2 145 52.4
ClCG03G001320 Citrullus lanatus HOM05D000196 ORTHO05D001288 7.1e-23 111.7 159 49.7
MD11G1095900 Malus domestica HOM05D000196 ORTHO05D001288 9.2e-23 111.3 159 49.1
RcHm_v2.0_Chr5g0066111 Rosa chinensis HOM05D000196 ORTHO05D001288 2.7e-22 109.8 146 51.4
FAN21G2009 Fragaria x ananassa HOM05D000196 ORTHO05D001288 4.6e-22 109.0 146 52.7
CsaV3_1G034500 Cucumis sativus L. HOM05D000196 ORTHO05D001288 1.0e-21 107.8 161 48.4
Dinv17037 Davidia involucrata HOM05D000196 ORTHO05D001288 2.3e-21 106.7 150 48.0
Dinv42983 Davidia involucrata HOM05D000196 ORTHO05D001288 2.3e-21 106.7 150 48.0
Dinv43116 Davidia involucrata HOM05D000196 ORTHO05D001288 2.3e-21 106.7 150 48.0
Potri.009G035000 Populus trichocarpa HOM05D000196 ORTHO05D001288 5.1e-21 105.5 159 44.7
MELO3C020611.2 Cucumis melo HOM05D000196 ORTHO05D001288 1.9e-20 103.6 162 46.9
CiPaw.13G090400 Carya illinoinensis HOM05D000196 ORTHO05D001288 3.3e-20 102.8 157 47.1
Dinv34273 Davidia involucrata HOM05D000196 ORTHO05D001288 7.3e-20 101.7 156 44.2
Manes.02G129800 Manihot esculenta HOM05D000196 ORTHO05D001288 9.5e-20 101.3 163 44.8
Potri.001G243600 Populus trichocarpa HOM05D000196 ORTHO05D001288 9.5e-20 101.3 166 44.0
Sabra09G0025000 Salix brachista HOM05D000196 ORTHO05D001288 6.2e-19 98.6 153 42.5
Cfa011539 Carpinus fangiana HOM05D000196 ORTHO05D001288 1.1e-18 97.8 172 46.5
Sed0006622 Sechium edule HOM05D000196 ORTHO05D001288 1.8e-18 97.1 158 48.1
Hma1.2p1_0615F.1_g189720 Hydrangea macrophylla HOM05D000196 ORTHO05D001288 2.3e-18 96.7 158 43.0
Medtr4g064730 Medicago truncatula HOM05D000196 ORTHO05D001288 2.3e-18 96.7 145 44.1
Manes.01G170000 Manihot esculenta HOM05D000196 ORTHO05D001288 3.1e-18 96.3 159 44.0
MD03G1086800 Malus domestica HOM05D000196 ORTHO05D001288 8.9e-18 94.7 159 47.8
Sed0001074 Sechium edule HOM05D000196 ORTHO05D001288 8.9e-18 94.7 166 44.6
GSVIVG01024916001 Vitis vinifera HOM05D000196 ORTHO05D001288 8.9e-18 94.7 116 50.0
CSS0003719 Camellia sinensis var. sinensis HOM05D000196 ORTHO05D001288 1.5e-17 94.0 156 41.7
Ciclev10028658m.g Citrus clementina HOM05D000196 ORTHO05D001288 1.5e-17 94.0 163 42.3
arahy.Tifrunner.gnm1.ann1.893SZW Arachis hypogaea HOM05D000196 ORTHO05D001288 3.4e-17 92.8 152 44.7
Dinv11593 Davidia involucrata HOM05D000196 ORTHO05D001288 1.7e-16 90.5 109 47.7
Rhsim13G0077900 Rhododendron simsii HOM05D000196 ORTHO05D001288 2.9e-16 89.7 152 40.1
Sopen06g001660 Solanum pennellii HOM05D000196 ORTHO05D001288 4.9e-16 89.0 149 43.6
PGR119G1281 Punica granatum HOM05D000196 ORTHO05D001288 8.4e-16 88.2 169 42.0
Nn2g13421 Nelumbo nucifera HOM05D000196 ORTHO05D001288 1.1e-15 87.8 149 43.6
Solyc06g005680.4 Solanum lycopersicum HOM05D000196 ORTHO05D001288 1.1e-15 87.8 149 43.6
TAR633G0513 Trochodendron aralioides HOM05D000196 ORTHO05D001288 1.1e-15 87.8 139 45.3
Atru.chr3.3961 Acer truncatum HOM05D000196 ORTHO05D001288 1.4e-15 87.4 167 37.7
Cc01_g13250 Coffea canephora HOM05D000196 ORTHO05D001288 1.4e-15 87.4 166 38.0
VMungo1127G1858 Vigna mungo HOM05D000196 ORTHO05D001288 1.4e-15 87.4 139 44.6
Cpa.g.sc81.106 Carica papaya HOM05D000196 ORTHO05D001288 2.4e-15 86.7 167 40.7
TAR560G0008 Trochodendron aralioides HOM05D000196 ORTHO05D001288 2.4e-15 86.7 155 40.6
Psat7g211480 Pisum sativum HOM05D000196 ORTHO05D001288 3.2e-15 86.3 147 42.9
TAR623G1059 Trochodendron aralioides HOM05D000196 ORTHO05D001288 3.2e-15 86.3 155 40.6
TAR636G0509 Trochodendron aralioides HOM05D000196 ORTHO05D001288 5.4e-15 85.5 153 42.5
Lj2P1068T26 Lonicera japonica HOM05D000196 ORTHO05D001288 1.2e-14 84.3 104 48.1
vmacro14553 Vaccinium macrocarpon HOM05D000196 ORTHO05D001288 1.2e-14 84.3 79 58.2
Glyma.12G060200 Glycine max HOM05D000196 ORTHO05D001288 1.6e-14 84.0 75 61.3
Gohir.A03G045000 Gossypium hirsutum HOM05D000196 ORTHO05D001288 2.1e-14 83.6 177 41.8
Lj1P147T66 Lonicera japonica HOM05D000196 ORTHO05D001288 2.1e-14 83.6 132 44.7
PGSC0003DMG400002144 Solanum tuberosum HOM05D000196 ORTHO05D001288 2.1e-14 83.6 150 43.3
arahy.Tifrunner.gnm1.ann1.7BR3CD Arachis hypogaea HOM05D000196 ORTHO05D001288 2.7e-14 83.2 145 43.4
CAN.G141.6 Capsicum annuum HOM05D000196 ORTHO05D001288 3.5e-14 82.8 143 44.1
Nitab4.5_0000102g0300 Nicotiana tabacum HOM05D000196 ORTHO05D001288 3.5e-14 82.8 115 46.1
Nitab4.5_0004892g0040 Nicotiana tabacum HOM05D000196 ORTHO05D001288 1.0e-13 81.3 137 42.3
Glyma.11G136600 Glycine max HOM05D000196 ORTHO05D001288 1.3e-13 80.9 75 60.0
Lsat_1_v5_gn_9_24661 Lactuca sativa HOM05D000196 ORTHO05D001288 1.3e-13 80.9 151 41.7
Gohir.D05G094100 Gossypium hirsutum HOM05D000196 ORTHO05D001288 2.3e-13 80.1 139 45.3
Gorai.009G097100 Gossypium raimondii HOM05D000196 ORTHO05D001288 2.3e-13 80.1 140 45.7
Lsat_1_v5_gn_8_72921 Lactuca sativa HOM05D000196 ORTHO05D001288 3.0e-13 79.7 154 36.4
DCAR_015637 Daucus carota HOM05D000196 ORTHO05D001288 5.1e-13 79.0 60 65.0
Gohir.A05G093600 Gossypium hirsutum HOM05D000196 ORTHO05D001288 5.1e-13 79.0 140 45.0
Phvul.011G062100 Phaseolus vulgaris HOM05D000196 ORTHO05D001288 6.6e-13 78.6 154 40.3
Nn2g11179 Nelumbo nucifera HOM05D000196 ORTHO05D001288 8.6e-13 78.2 153 40.5
Actinidia23922 Actinidia chinensis HOM05D000196 ORTHO05D001288 1.5e-12 77.4 115 43.5
Gohir.A07G100200 Gossypium hirsutum HOM05D000196 ORTHO05D001288 1.5e-12 77.4 172 38.4
vmacro03037 Vaccinium macrocarpon HOM05D000196 ORTHO05D001288 1.5e-12 77.4 94 47.9
Duzib170G0972 Durio zibethinus HOM05D000196 ORTHO05D001288 1.9e-12 77.0 166 38.6
Gohir.D03G122000 Gossypium hirsutum HOM05D000196 ORTHO05D001288 1.9e-12 77.0 178 40.4
Aqoxy1G00885 Aquilegia oxysepala HOM05D000196 ORTHO05D001288 2.5e-12 76.6 141 39.0
Gorai.003G129100 Gossypium raimondii HOM05D000196 ORTHO05D001288 3.3e-12 76.3 171 40.9
Ca_20620_v3 Cicer arietinum L. HOM05D000196 ORTHO05D001288 4.3e-12 75.9 145 40.0
COL.COLO4_18566 Corchorus olitorius HOM05D000196 ORTHO05D001288 4.3e-12 75.9 174 37.9
Lalb_Chr22g0352471 Lupinus albus HOM05D000196 ORTHO05D001288 4.3e-12 75.9 140 40.7
Oeu004174.1 Olea europaea HOM05D000196 ORTHO05D001288 4.3e-12 75.9 150 36.0
THA.LOC104810761 Tarenaya hassleriana HOM05D000196 ORTHO05D001288 4.3e-12 75.9 73 57.5
PSO339G1776 Papaver somniferum HOM05D000196 ORTHO05D001288 5.6e-12 75.5 64 62.5
CSS0034150 Camellia sinensis var. sinensis HOM05D000196 ORTHO05D001288 7.3e-12 75.1 79 53.2
HanXRQChr06g0179041 Helianthus annuus HOM05D000196 ORTHO05D001288 7.3e-12 75.1 143 36.4
Thecc.09G317000 Theobroma cacao HOM05D000196 ORTHO05D001288 7.3e-12 75.1 182 38.5
DCAR_005950 Daucus carota HOM05D000196 ORTHO05D001288 9.6e-12 74.7 124 41.9
Gohir.D07G104300 Gossypium hirsutum HOM05D000196 ORTHO05D001288 9.6e-12 74.7 140 42.1
Gorai.001G112200 Gossypium raimondii HOM05D000196 ORTHO05D001288 9.6e-12 74.7 140 42.1
MBI14_g08027_MAGBIO Magnolia biondii HOM05D000196 ORTHO05D001288 9.6e-12 74.7 139 43.2
Aqoxy2G02287 Aquilegia oxysepala HOM05D000196 ORTHO05D001288 1.6e-11 73.9 100 49.0
A06p20850 Brassica napus HOM05D000196 ORTHO05D001288 1.6e-11 73.9 73 57.5
Peaxi162Scf00265g00015 Petunia axillaris HOM05D000196 ORTHO05D001288 2.1e-11 73.6 97 48.5
Actinidia34423 Actinidia chinensis HOM05D000196 ORTHO05D001288 2.8e-11 73.2 123 40.7
AL5G25530 Arabidopsis lyrata HOM05D000196 ORTHO05D001288 3.6e-11 72.8 75 53.3
BcaC01g01898 Brassica carinata HOM05D000196 ORTHO05D001288 3.6e-11 72.8 73 54.8
C03p70830 Brassica napus HOM05D000196 ORTHO05D001288 3.6e-11 72.8 73 54.8
BolC3t19354H Brassica oleracea HOM05D000196 ORTHO05D001288 3.6e-11 72.8 73 54.8
Lj3g0001786 Lotus japonicus HOM05D000196 ORTHO05D001288 3.6e-11 72.8 130 40.0
AL8G36060 Arabidopsis lyrata HOM05D000196 ORTHO05D001288 4.7e-11 72.4 130 39.2
Thhalv10002605m.g Eutrema salsugineum HOM05D000196 ORTHO05D001288 4.7e-11 72.4 75 53.3
Rhsim01G0231100 Rhododendron simsii HOM05D000196 ORTHO05D001288 4.7e-11 72.4 63 60.3
BraA06t25163Z Brassica rapa HOM05D000196 ORTHO05D001288 6.2e-11 72.0 73 54.8
HanXRQChr05g0135231 Helianthus annuus HOM05D000196 ORTHO05D001288 1.1e-10 71.2 160 36.2
ATR0559G174 Amborella trichopoda HOM05D000196 ORTHO05D001288 1.4e-10 70.9 69 55.1
MSTRG.21219 Avicennia marina HOM05D000196 ORTHO05D001288 1.4e-10 70.9 122 42.6
HanXRQChr12g0374161 Helianthus annuus HOM05D000196 ORTHO05D001288 1.4e-10 70.9 126 35.7
AT3G46640 Arabidopsis thaliana HOM05D000196 ORTHO05D001288 1.8e-10 70.5 75 52.0
Lalb_Chr14g0372001 Lupinus albus HOM05D000196 ORTHO05D001288 1.8e-10 70.5 139 38.8
HPP92_019841 Vanilla planifolia HOM05D000196 ORTHO05D001288 1.8e-10 70.5 68 54.4
BcaB01g00998 Brassica carinata HOM05D000196 ORTHO05D001288 2.4e-10 70.1 71 54.9
ECA247G3981 Erigeron canadensis HOM05D000196 ORTHO05D001288 2.4e-10 70.1 140 36.4
Sc12g0001280 Simmondsia chinensis HOM05D000196 ORTHO05D001288 2.4e-10 70.1 140 37.1
Oeu007655.1 Olea europaea HOM05D000196 ORTHO05D001288 3.1e-10 69.7 152 36.2
Lsat_1_v5_gn_5_169461 Lactuca sativa HOM05D000196 ORTHO05D001288 4.0e-10 69.3 126 41.3
MBI05_g38474_MAGBIO Magnolia biondii HOM05D000196 ORTHO05D001288 4.0e-10 69.3 135 40.7
Aa31LG4G15650 Aethionema arabicum HOM05D000196 ORTHO05D001288 6.9e-10 68.6 73 54.8
Carub.0005s1291 Capsella rubella HOM05D000196 ORTHO05D001288 8.9e-10 68.2 73 53.4
CARHR273030 Cardamine hirsuta HOM05D000196 ORTHO05D001288 8.9e-10 68.2 140 37.9
ECA248G1863 Erigeron canadensis HOM05D000196 ORTHO05D001288 1.2e-09 67.8 73 50.7
SHI05911 Sapria himalayana HOM05D000196 ORTHO05D001288 1.5e-09 67.4 114 41.2
Sp6g21270 Schrenkiella parvula HOM05D000196 ORTHO05D001288 1.5e-09 67.4 143 39.9
BcaB02g10714 Brassica carinata HOM05D000196 ORTHO05D001288 2.0e-09 67.0 73 54.8
Solyc06g076350.3 Solanum lycopersicum HOM05D000196 ORTHO05D001288 2.0e-09 67.0 159 35.2
Sopen06g032760 Solanum pennellii HOM05D000196 ORTHO05D001288 2.0e-09 67.0 159 35.8
CARHR155170 Cardamine hirsuta HOM05D000196 ORTHO05D001288 2.6e-09 66.6 124 39.5
CDE09G0055 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 2.6e-09 66.6 59 54.2
DCAR_018923 Daucus carota HOM05D000196 ORTHO05D001288 2.6e-09 66.6 92 44.6
Nitab4.5_0006916g0030 Nicotiana tabacum HOM05D000196 ORTHO05D001288 2.6e-09 66.6 157 41.4
HPP92_021126 Vanilla planifolia HOM05D000196 ORTHO05D001288 2.6e-09 66.6 74 50.0
BcaB05g23541 Brassica carinata HOM05D000196 ORTHO05D001288 3.4e-09 66.2 127 41.7
HanXRQChr01g0027091 Helianthus annuus HOM05D000196 ORTHO05D001288 3.4e-09 66.2 133 39.1
A01p26150 Brassica napus HOM05D000196 ORTHO05D001288 4.4e-09 65.9 64 56.2
Migut.D00884 Erythranthe guttata HOM05D000196 ORTHO05D001288 4.4e-09 65.9 119 42.0
SGA_v2.0_scaffold54G19483 Striga asiatica HOM05D000196 ORTHO05D001288 4.4e-09 65.9 72 52.8
BraA01t02533Z Brassica rapa HOM05D000196 ORTHO05D001288 5.8e-09 65.5 61 57.4
Nitab4.5_0000463g0190 Nicotiana tabacum HOM05D000196 ORTHO05D001288 5.8e-09 65.5 157 40.8
SEGI_10072 Sequoiadendron giganteum HOM05D000196 ORTHO05D001288 5.8e-09 65.5 65 55.4
SGA_v2.0_scaffold111G31535 Striga asiatica HOM05D000196 ORTHO05D001288 5.8e-09 65.5 63 57.1
PGSC0003DMG400030328 Solanum tuberosum HOM05D000196 ORTHO05D001288 7.6e-09 65.1 165 35.2
HanXRQChr04g0109251 Helianthus annuus HOM05D000196 ORTHO05D001288 9.9e-09 64.7 80 47.5
HanXRQChr08g0226641 Helianthus annuus HOM05D000196 ORTHO05D001288 9.9e-09 64.7 73 43.8
SalBow1G8008 Salvia bowleyana HOM05D000196 ORTHO05D001288 9.9e-09 64.7 63 55.6
PSO063G0138 Papaver somniferum HOM05D000196 ORTHO05D001288 1.3e-08 64.3 149 36.2
Sp5g15040 Schrenkiella parvula HOM05D000196 ORTHO05D001288 1.3e-08 64.3 73 49.3
Aa31LG1G11910 Aethionema arabicum HOM05D000196 ORTHO05D001288 1.7e-08 63.9 132 38.6
Carub.0008s2024 Capsella rubella HOM05D000196 ORTHO05D001288 1.7e-08 63.9 105 44.8
Sc21g0005990 Simmondsia chinensis HOM05D000196 ORTHO05D001288 1.7e-08 63.9 148 32.4
AT5G59570 Arabidopsis thaliana HOM05D000196 ORTHO05D001288 2.9e-08 63.2 137 38.7
EL10Ac7g16056 Beta vulgaris HOM05D000196 ORTHO05D001288 2.9e-08 63.2 76 47.4
MELO3C025894.2 Cucumis melo HOM05D000196 ORTHO05D001288 2.9e-08 63.2 134 36.6
SalBow6G5625 Salvia bowleyana HOM05D000196 ORTHO05D001288 2.9e-08 63.2 117 38.5
BcaC09g49760 Brassica carinata HOM05D000196 ORTHO05D001288 4.9e-08 62.4 149 34.9
C01p33230 Brassica napus HOM05D000196 ORTHO05D001288 4.9e-08 62.4 149 34.9
BolC1t03259H Brassica oleracea HOM05D000196 ORTHO05D001288 4.9e-08 62.4 136 36.0
CDE02G4552 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 4.9e-08 62.4 59 50.8
unitig_46.g18413 Utricularia gibba HOM05D000196 ORTHO05D001288 4.9e-08 62.4 115 40.9
CDE04G1944 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 1.9e-07 60.5 72 43.1
CsaV3_6G016650 Cucumis sativus L. HOM05D000196 ORTHO05D001288 1.9e-07 60.5 135 37.0
CsaV3_7G009940 Cucumis sativus L. HOM05D000196 ORTHO05D001288 1.9e-07 60.5 135 37.0
Eucgr.B02313 Eucalyptus grandis HOM05D000196 ORTHO05D001288 3.2e-07 59.7 154 35.1
Os01g0971800 Oryza sativa ssp. japonica HOM05D000196 ORTHO05D001288 3.2e-07 59.7 69 49.3
CAN.G394.73 Capsicum annuum HOM05D000196 ORTHO05D001288 4.2e-07 59.3 143 36.4
Sabra16G0147900 Salix brachista HOM05D000196 ORTHO05D001288 4.2e-07 59.3 134 37.3
QL08p058314 Quercus lobata HOM05D000384 ORTHO05D007626 5.4e-07 58.9 55 50.9
Hund04927 Selenicereus undatus HOM05D000196 ORTHO05D001288 7.1e-07 58.5 71 46.5
Ah.15g098560 Amaranthus hybridus HOM05D000196 ORTHO05D001288 1.2e-06 57.8 73 42.5
ClCG02G019950 Citrullus lanatus HOM05D000196 ORTHO05D001288 2.1e-06 57.0 146 37.0
Zm00001eb362240 Zea mays HOM05D000196 ORTHO05D001288 2.1e-06 57.0 61 50.8
Nn3g18771 Nelumbo nucifera HOM05D000196 ORTHO05D001288 2.7e-06 56.6 50 64.0
PSO339G5344 Papaver somniferum HOM05D000196 ORTHO05D001288 2.7e-06 56.6 147 36.1
Peaxi162Scf00481g00327 Petunia axillaris HOM05D000196 ORTHO05D001288 2.7e-06 56.6 139 35.3
THA.LOC104816077 Tarenaya hassleriana HOM05D000196 ORTHO05D001288 2.7e-06 56.6 72 51.4
Sc10g0001770 Simmondsia chinensis HOM05D000196 ORTHO05D001288 6.0e-06 55.5 78 41.0
CDE07G1166 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 7.8e-06 55.1 66 42.4


User provided reference genes

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