Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 1.4e-171 606.3 327 100.0
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 4.0e-134 481.9 300 82.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 8.8e-134 480.7 300 82.0
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.8e-132 475.7 318 77.7
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.7e-129 466.5 327 73.4
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.3e-129 466.1 329 73.6
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.8e-126 456.4 330 71.2
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.0e-126 455.7 317 74.1
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 6.8e-126 454.5 333 71.8
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 8.9e-126 454.1 330 70.3
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.0e-125 453.0 330 70.0
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.4e-125 451.8 318 73.0
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.7e-125 451.4 330 70.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.7e-124 449.9 293 78.5
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.9e-124 448.4 325 71.4
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.1e-123 447.2 334 70.1
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.8e-123 446.4 327 70.0
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.8e-123 446.4 328 71.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 9.2e-123 444.1 328 72.0
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-122 443.4 338 68.6
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 5.9e-122 441.4 328 71.0
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.7e-121 439.9 301 72.4
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 6.6e-121 438.0 293 74.4
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 8.6e-121 437.6 301 72.4
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.3e-120 435.6 295 72.9
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.3e-120 435.3 295 72.5
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 4.3e-120 435.3 312 70.5
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 4.7e-119 431.8 328 70.4
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.0e-118 430.6 300 71.3
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.0e-118 430.6 331 68.9
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.4e-118 430.3 325 70.5
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.8e-118 429.9 295 72.2
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.8e-118 429.9 294 73.8
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 2.3e-118 429.5 295 72.2
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.3e-118 429.5 325 68.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.3e-118 429.5 330 69.1
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 3.1e-118 429.1 324 67.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.0e-118 428.7 320 71.2
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 4.0e-118 428.7 331 68.6
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 4.0e-118 428.7 328 69.8
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.2e-118 428.3 323 69.7
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.2e-118 428.3 323 69.7
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 5.2e-118 428.3 325 68.0
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 6.8e-118 427.9 331 67.1
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 8.9e-118 427.6 323 69.7
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.5e-117 426.8 329 68.4
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.5e-117 426.8 323 69.3
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.0e-117 426.4 325 67.1
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.6e-117 426.0 323 69.3
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 9.8e-117 424.1 302 70.5
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.3e-116 423.7 290 72.8
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.7e-116 423.3 325 68.9
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 4.9e-116 421.8 320 66.9
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 8.3e-116 421.0 341 66.0
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.4e-115 420.2 292 71.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.4e-115 420.2 328 68.6
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.4e-115 419.5 326 68.4
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.2e-115 419.1 298 70.5
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 9.2e-115 417.5 322 68.9
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.6e-114 416.8 294 69.7
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.6e-114 416.8 293 68.9
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 4.6e-114 415.2 321 68.2
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 4.6e-114 415.2 323 67.5
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.7e-113 413.3 356 62.9
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 3.0e-113 412.5 293 70.3
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 3.9e-113 412.1 329 66.6
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 8.6e-113 411.0 291 70.8
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.1e-112 410.6 329 66.6
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.9e-112 409.8 294 70.7
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.3e-112 409.1 289 70.2
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 4.3e-112 408.7 294 70.4
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 4.3e-112 408.7 288 70.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.3e-112 407.9 324 66.0
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 7.3e-112 407.9 328 63.7
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.2e-111 407.1 327 64.2
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.6e-111 406.8 291 68.4
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.7e-111 405.2 295 71.9
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 8.0e-111 404.4 326 65.0
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 4.0e-110 402.1 327 63.0
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 6.8e-110 401.4 315 63.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 6.8e-110 401.4 395 56.7
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 8.9e-110 401.0 330 63.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.5e-109 400.2 322 63.0
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 4.9e-108 395.2 323 62.5
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 8.3e-108 394.4 315 63.2
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.4e-107 393.7 321 63.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.6e-106 390.2 325 64.0
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.6e-106 390.2 325 62.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.6e-106 390.2 324 63.0
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.6e-106 390.2 331 64.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 7.8e-106 387.9 324 64.5
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.3e-105 386.3 310 63.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.3e-105 386.3 293 65.5
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.3e-105 386.3 287 67.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.0e-105 386.0 325 64.3
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 3.9e-105 385.6 292 64.4
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 5.1e-105 385.2 292 66.1
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 5.1e-105 385.2 292 66.1
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.5e-104 383.6 312 65.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.9e-104 383.3 322 62.1
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.5e-104 382.9 293 65.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 3.3e-104 382.5 292 65.8
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.3e-104 381.3 258 72.9
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-103 380.6 292 65.1
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.2e-103 380.6 292 65.1
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.7e-103 378.6 302 62.6
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 8.1e-103 377.9 293 64.8
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-102 375.2 293 64.8
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 6.8e-102 374.8 299 63.2
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 6.8e-102 374.8 293 64.5
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 8.9e-102 374.4 295 64.1
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.6e-101 372.9 293 64.2
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 2.6e-101 372.9 295 63.4
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 9.9e-101 370.9 285 65.3
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 9.9e-101 370.9 345 58.8
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.2e-100 369.8 348 59.8
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 4.9e-100 368.6 287 65.9
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.2e-99 365.9 298 63.1
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 7.1e-99 364.8 288 61.8
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 9.2e-99 364.4 300 65.7
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.1e-98 363.2 389 53.7
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 6.0e-98 361.7 406 49.5
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 2.3e-97 359.8 305 61.3
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.1e-96 357.5 312 61.2
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.8e-95 352.8 332 58.1
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 7.8e-90 334.7 295 59.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 2.8e-87 326.2 327 52.6
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 3.6e-87 325.9 346 56.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 7.8e-82 308.1 294 55.8
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 9.6e-80 301.2 314 53.8
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.8e-79 298.9 321 52.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.1e-75 287.7 320 50.6
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 7.1e-75 285.0 292 53.4
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.2e-74 284.3 292 54.5
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-74 283.9 296 53.4
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 5.6e-72 275.4 285 53.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 8.1e-71 271.6 248 56.5
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 6.7e-65 251.9 326 46.3
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.7e-65 251.5 180 71.1
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 5.8e-61 238.8 325 47.1
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 3.8e-60 236.1 167 70.7
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 5.0e-60 235.7 248 51.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-58 229.6 197 61.9
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-58 229.6 235 54.9
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 6.3e-55 218.8 154 66.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.5e-53 214.2 215 57.2
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.0e-49 199.9 136 75.0
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-45 187.2 155 64.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.0e-45 187.2 189 59.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.8e-41 174.1 304 37.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.8e-41 174.1 161 64.0
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.9e-36 156.8 156 60.9
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 3.2e-35 153.3 320 35.0
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-29 134.8 117 63.2
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-26 124.4 115 59.1
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-24 117.9 79 67.1
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 5.7e-24 115.9 299 31.1
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.2e-21 108.2 66 74.2
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.2e-19 100.1 79 60.8
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.5e-16 91.3 99 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.1e-14 83.6 89 52.8
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 8.6e-12 75.5 61 65.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.3e-09 67.4 43 65.1
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.4e-08 63.2 39 82.1
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 9.8e-08 62.0 90 46.7
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 9.8e-08 62.0 52 57.7
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 9.8e-08 62.0 50 58.0


User provided reference genes

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