Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 2.8e-62 241.9 134 100.0
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 4.2e-58 228.0 124 91.9
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 7.2e-58 227.3 134 93.3
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.0e-56 223.4 124 91.1
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 4.8e-54 214.5 124 87.9
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 6.3e-54 214.2 124 85.5
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.1e-53 213.4 124 86.3
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-53 213.0 124 87.1
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.8e-53 212.6 124 87.1
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.8e-53 212.6 124 86.3
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.4e-53 212.2 124 85.5
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 2.4e-53 212.2 124 86.3
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 5.4e-53 211.1 124 86.3
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.6e-52 209.5 124 84.7
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.6e-52 209.5 124 85.5
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.7e-52 208.8 124 83.9
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 5.9e-52 207.6 124 84.7
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 5.9e-52 207.6 124 81.5
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 5.9e-52 207.6 124 84.7
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 5.9e-52 207.6 124 84.7
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 5.9e-52 207.6 124 83.9
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.7e-51 206.1 124 82.3
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.7e-51 206.1 125 84.8
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 2.2e-51 205.7 124 82.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 2.9e-51 205.3 123 82.9
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.9e-51 205.3 125 84.8
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.8e-51 204.9 125 84.8
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 3.8e-51 204.9 124 83.9
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.8e-51 204.9 124 81.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 5.0e-51 204.5 124 83.1
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 5.0e-51 204.5 125 84.8
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 6.5e-51 204.1 124 80.6
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 6.5e-51 204.1 126 84.9
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 6.5e-51 204.1 126 84.1
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 8.5e-51 203.8 124 79.8
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.1e-50 203.4 124 80.6
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.5e-50 203.0 124 82.3
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 3.2e-50 201.8 125 83.2
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 3.2e-50 201.8 124 83.1
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.2e-50 201.8 124 79.8
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 3.2e-50 201.8 124 79.8
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 3.2e-50 201.8 124 79.8
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.2e-50 201.4 124 83.9
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 5.5e-50 201.1 124 79.8
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 5.5e-50 201.1 124 79.8
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 5.5e-50 201.1 126 84.1
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 5.5e-50 201.1 126 84.1
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.5e-50 201.1 124 79.8
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 5.5e-50 201.1 124 79.8
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 7.2e-50 200.7 124 84.7
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 9.4e-50 200.3 124 81.5
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.4e-50 200.3 126 80.2
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.2e-49 199.9 126 82.5
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.1e-49 199.1 124 79.0
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 2.1e-49 199.1 124 79.8
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.7e-49 198.7 125 81.6
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 3.6e-49 198.4 124 79.8
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.7e-49 198.0 124 78.2
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 6.1e-49 197.6 126 79.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 6.1e-49 197.6 124 78.2
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.1e-49 197.6 124 83.1
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 8.0e-49 197.2 125 81.6
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.0e-48 196.8 124 81.5
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.4e-48 196.4 124 80.6
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.8e-48 196.1 124 78.2
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 6.8e-48 194.1 121 83.5
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 6.8e-48 194.1 124 77.4
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 6.8e-48 194.1 124 79.8
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 8.8e-48 193.7 124 80.6
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.5e-47 193.0 131 77.9
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.0e-47 192.6 131 74.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 2.6e-47 192.2 123 79.7
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.6e-47 192.2 142 70.4
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.4e-47 191.4 124 75.8
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 5.7e-47 191.0 124 77.4
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 7.5e-47 190.7 128 77.3
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 7.5e-47 190.7 124 78.2
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.2e-46 189.1 125 76.8
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 3.7e-46 188.3 124 76.6
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.8e-45 186.0 126 74.6
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 9.1e-45 183.7 139 69.8
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.2e-44 183.3 125 74.4
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 1.2e-44 183.3 126 73.8
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.0e-44 182.6 124 73.4
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-44 182.6 116 76.7
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 3.5e-44 181.8 121 74.4
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 4.5e-44 181.4 125 76.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 4.5e-44 181.4 99 86.9
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.3e-43 179.9 125 75.2
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.3e-43 179.1 100 86.0
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 2.9e-43 178.7 125 74.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 5.0e-43 177.9 124 74.2
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 1.1e-42 176.8 122 70.5
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 5.6e-42 174.5 162 59.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 7.2e-42 174.1 124 71.8
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 2.8e-41 172.2 104 82.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 4.7e-41 171.4 124 74.2
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 4.7e-41 171.4 105 79.0
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.8e-40 169.5 122 73.0
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.3e-40 169.1 116 69.8
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 4.0e-40 168.3 126 69.8
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 4.0e-40 168.3 126 69.8
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 4.0e-40 168.3 126 69.8
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 4.0e-40 168.3 105 77.1
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 5.2e-40 167.9 127 69.3
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 6.8e-40 167.5 124 70.2
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 8.9e-40 167.2 122 71.3
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 1.2e-39 166.8 125 69.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 1.2e-39 166.8 120 72.5
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.5e-39 166.4 154 62.3
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.5e-39 166.4 111 73.9
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.5e-39 166.4 119 67.2
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-39 166.0 127 65.4
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 7.5e-39 164.1 111 73.0
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 7.5e-39 164.1 122 70.5
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 7.5e-39 164.1 111 73.0
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 9.8e-39 163.7 165 55.2
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.7e-38 162.9 115 72.2
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 2.2e-38 162.5 115 69.6
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 1.4e-37 159.8 122 68.9
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 2.4e-37 159.1 124 71.0
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.2e-36 156.8 115 70.4
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.0e-36 156.0 158 55.7
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.5e-36 155.2 90 83.3
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.6e-36 154.8 87 85.1
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 5.9e-36 154.5 87 86.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.6e-34 147.9 115 65.2
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.6e-33 146.4 124 64.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 3.6e-33 145.2 81 88.9
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.7e-33 144.8 110 60.9
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 4.7e-33 144.8 96 72.9
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.2e-33 144.4 104 63.5
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.0e-32 143.7 124 64.5
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.0e-32 141.7 120 58.3
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 5.2e-32 141.4 108 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.8e-32 141.0 121 57.9
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.0e-31 139.4 93 75.3
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.4e-31 138.7 109 59.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.7e-30 136.3 89 75.3
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.9e-29 132.9 101 61.4
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 3.2e-29 132.1 113 61.1
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 7.8e-28 127.5 77 81.8
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 9.5e-26 120.6 69 82.6
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 2.8e-25 119.0 78 75.6
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 6.8e-24 114.4 77 70.1
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 8.9e-24 114.0 90 65.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 2.6e-23 112.5 73 72.6
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 3.7e-22 108.6 105 49.5
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.7e-22 108.6 63 77.8
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.9e-21 106.3 124 52.4
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.3e-19 100.1 94 53.2
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 3.0e-19 99.0 56 83.9
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 4.3e-18 95.1 103 43.7
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.1e-16 89.0 89 47.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.1e-16 89.0 52 80.8
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 4.6e-12 75.1 110 39.1
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 3.0e-11 72.4 47 76.6
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.1e-10 70.5 57 59.6
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 7.3e-10 67.8 93 33.3
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.4e-07 58.9 33 84.8


User provided reference genes

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