Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.9e-231 805.4 401 100.0
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 6.2e-105 385.2 368 61.1
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 6.2e-105 385.2 368 61.1
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 5.4e-93 345.5 337 59.6
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 3.1e-88 329.7 352 55.7
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.7e-86 323.9 338 55.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 4.9e-86 322.4 339 56.0
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 4.9e-86 322.4 337 56.7
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.4e-85 320.9 337 54.9
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.5e-85 318.9 337 54.9
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 7.1e-85 318.5 337 56.1
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.2e-84 317.8 349 54.4
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 3.5e-84 316.2 337 54.9
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 6.0e-84 315.5 337 54.9
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 6.0e-84 315.5 339 54.6
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 6.7e-83 312.0 337 54.0
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 2.1e-81 307.0 349 53.3
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 6.2e-81 305.4 337 54.0
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 8.1e-81 305.1 338 52.7
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.8e-80 303.9 337 51.9
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.0e-80 302.8 339 52.5
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 5.3e-80 302.4 405 46.4
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 5.3e-80 302.4 337 52.2
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 5.3e-80 302.4 339 51.9
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 5.3e-80 302.4 336 51.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 6.9e-80 302.0 336 52.4
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 6.9e-80 302.0 337 53.1
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.2e-79 301.2 337 51.6
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.5e-79 300.8 337 52.2
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 3.4e-79 299.7 338 51.5
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 3.4e-79 299.7 337 50.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.8e-79 298.9 339 52.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 7.6e-79 298.5 337 51.9
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 7.6e-79 298.5 340 52.1
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 7.6e-79 298.5 337 51.0
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 7.6e-79 298.5 339 52.5
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.3e-78 297.7 369 50.7
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.3e-78 297.7 348 50.9
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.7e-78 297.4 347 50.1
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.7e-78 297.4 348 51.1
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.2e-78 297.0 337 51.0
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 2.2e-78 297.0 336 50.9
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.9e-78 296.6 388 46.4
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.8e-78 296.2 336 51.8
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 6.5e-78 295.4 340 52.4
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 6.5e-78 295.4 347 48.4
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.5e-78 295.4 339 52.2
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 6.5e-78 295.4 339 52.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 8.4e-78 295.0 338 50.6
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.1e-77 294.7 337 51.9
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.1e-77 294.7 337 51.6
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.1e-77 294.7 337 51.6
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.4e-77 294.3 338 50.0
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.4e-77 294.3 337 50.7
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.4e-77 294.3 336 52.4
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.9e-77 293.9 338 51.8
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.9e-77 293.9 338 51.2
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 2.5e-77 293.5 338 50.0
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.2e-77 293.1 338 51.5
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.2e-77 293.1 340 52.1
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 3.2e-77 293.1 336 51.8
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.2e-77 292.7 338 50.6
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 4.2e-77 292.7 338 51.8
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 5.5e-77 292.4 338 51.5
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.5e-77 292.4 339 51.9
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 7.1e-77 292.0 336 51.2
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 7.1e-77 292.0 337 50.4
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 9.3e-77 291.6 338 51.8
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.3e-77 291.6 340 50.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.2e-76 291.2 338 51.5
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.2e-76 291.2 338 51.5
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 2.1e-76 290.4 337 51.3
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.7e-76 290.0 337 51.3
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 3.5e-76 289.7 331 51.4
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 4.6e-76 289.3 337 50.7
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.8e-75 287.3 350 50.0
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 2.3e-75 287.0 338 51.2
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.0e-75 286.6 337 50.1
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 3.0e-75 286.6 337 50.1
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 6.7e-75 285.4 365 47.4
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 6.7e-75 285.4 337 49.9
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 3.3e-74 283.1 337 48.7
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.3e-74 282.7 380 46.1
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 4.3e-74 282.7 337 48.7
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 5.7e-74 282.3 338 50.3
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.3e-73 281.2 339 51.0
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 2.1e-73 280.4 336 49.1
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 2.8e-73 280.0 352 48.0
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.8e-73 279.3 337 49.9
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.3e-73 278.9 337 49.3
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 1.1e-72 278.1 339 48.1
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 1.4e-72 277.7 333 48.0
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.4e-72 276.9 337 49.0
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.4e-72 276.9 337 49.0
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.4e-72 276.9 337 49.3
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 3.1e-72 276.6 337 48.4
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 3.1e-72 276.6 338 47.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 5.3e-72 275.8 340 49.4
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.9e-72 275.4 337 49.3
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.9e-72 275.4 338 48.8
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 9.0e-72 275.0 348 48.6
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.0e-72 275.0 352 48.3
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-71 274.6 337 49.6
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.5e-71 274.2 339 49.6
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 2.6e-71 273.5 192 71.4
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.6e-71 273.5 339 49.9
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 7.6e-71 271.9 337 48.4
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 7.6e-71 271.9 337 49.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.0e-70 271.6 347 47.8
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.0e-70 271.6 339 48.7
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 2.9e-70 270.0 337 50.1
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.8e-70 269.6 196 71.4
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.1e-69 268.1 339 48.4
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.1e-69 268.1 339 48.4
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.1e-69 268.1 337 47.8
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.5e-66 256.9 337 49.6
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 4.3e-66 256.1 197 66.5
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 7.4e-66 255.4 340 45.6
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 7.4e-66 255.4 336 46.4
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 1.6e-65 254.2 336 46.4
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 6.3e-65 252.3 190 67.4
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 8.2e-65 251.9 201 67.7
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 9.1e-64 248.4 339 45.4
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.7e-62 244.2 177 70.6
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 3.2e-61 240.0 352 44.6
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 3.2e-61 240.0 373 43.2
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.2e-61 239.6 285 50.5
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 5.5e-61 239.2 341 46.0
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 6.1e-60 235.7 339 44.0
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.8e-59 234.2 339 44.0
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.7e-59 232.3 397 41.3
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.6e-58 230.3 336 43.2
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 4.8e-57 226.1 401 39.4
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 8.2e-57 225.3 336 43.5
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.4e-56 223.8 196 62.8
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.5e-55 221.1 261 51.3
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 2.2e-54 217.2 342 41.2
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 5.0e-54 216.1 193 61.7
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 9.4e-53 211.8 369 39.6
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.7e-50 202.6 136 74.3
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 9.7e-50 201.8 336 40.8
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 4.8e-49 199.5 191 58.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 7.2e-45 185.7 126 71.4
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 9.4e-45 185.3 195 55.4
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 6.1e-44 182.6 196 52.0
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.0e-44 182.2 185 54.6
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 8.8e-43 178.7 196 51.0
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.2e-42 178.3 268 42.5
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 4.4e-42 176.4 135 67.4
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 5.7e-42 176.0 134 66.4
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 8.2e-41 172.2 114 71.9
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.4e-40 170.6 176 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 3.1e-40 170.2 205 47.3
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 2.7e-39 167.2 115 71.3
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 2.2e-38 164.1 195 49.2
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 8.5e-38 162.2 194 49.0
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.5e-37 161.4 136 62.5
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.5e-37 160.6 139 62.6
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.5e-34 151.4 109 67.0
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.5e-34 151.4 109 67.0
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 7.0e-32 142.5 198 44.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.4e-27 128.3 177 45.8
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.0e-27 126.7 270 35.6
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.2e-26 125.2 105 62.9
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 2.6e-26 124.0 69 85.5
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.6e-26 124.0 86 67.4
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.3e-25 121.7 239 37.7
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.6e-23 114.8 130 51.5
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.9e-23 112.8 122 50.0
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 3.3e-21 107.1 87 62.1
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.1e-20 104.4 74 70.3
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.0e-19 100.5 79 63.3
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 2.0e-15 87.8 74 62.2
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.1e-11 75.5 256 32.0
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 2.3e-11 74.3 57 64.9
QL04p045852 Quercus lobata HOM05D010191 ORTHO05D012369 8.9e-11 72.4 64 64.1
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.2e-10 72.0 101 40.6
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.0e-07 61.2 39 79.5
QL05p062582 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-07 60.1 58 51.7
QL10p033496 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-07 60.1 58 51.7
QL11p001878 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-07 60.1 58 51.7
QL09p039572 Quercus lobata HOM05D006747 ORTHO05D008384 5.0e-06 56.6 68 41.2
QL02p081065 Quercus lobata HOM05D000003 ORTHO05D000004 6.6e-06 56.2 63 42.9


User provided reference genes

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