Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 1.2e-32 142.5 71 100.0
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 5.2e-31 137.1 71 91.5
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 6.8e-31 136.7 71 91.5
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 1.2e-30 136.0 71 90.1
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 2.6e-30 134.8 71 90.1
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 4.4e-30 134.0 71 88.7
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 4.4e-30 134.0 71 88.7
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 1.7e-29 132.1 70 88.6
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 2.2e-29 131.7 69 91.3
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 8.3e-29 129.8 70 90.0
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.4e-28 128.3 70 88.6
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 3.2e-28 127.9 71 83.1
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 7.0e-28 126.7 71 84.5
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 1.2e-27 125.9 71 84.5
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 1.6e-27 125.6 71 85.9
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 3.5e-27 124.4 71 83.1
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 4.6e-27 124.0 69 84.1
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.7e-26 122.1 69 82.6
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 3.9e-26 120.9 69 84.1
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 2.5e-25 118.2 71 84.5
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 5.6e-25 117.1 71 84.5
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 7.3e-25 116.7 70 78.6
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 6.2e-24 113.6 67 77.6
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.8e-23 112.1 69 73.9
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 5.2e-23 110.5 65 75.4
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 5.2e-23 110.5 71 78.9
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 8.9e-23 109.8 119 53.8
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 2.6e-22 108.2 69 71.0
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.3e-21 105.9 70 75.7
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 6.4e-21 103.6 70 67.1
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 8.3e-21 103.2 71 67.6
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 1.4e-20 102.4 87 63.2
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.9e-20 102.1 87 63.2
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.9e-20 102.1 87 63.2
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 1.9e-20 102.1 87 64.4
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.4e-20 101.7 87 60.9
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 2.4e-20 101.7 87 60.9
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 3.2e-20 101.3 87 62.1
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 4.1e-20 100.9 88 59.1
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 7.0e-20 100.1 71 71.8
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 7.0e-20 100.1 87 62.1
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.2e-19 99.4 87 60.9
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.2e-19 99.4 87 60.9
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.2e-19 99.4 87 60.9
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 1.6e-19 99.0 87 59.8
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 1.6e-19 99.0 86 60.5
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 2.1e-19 98.6 87 59.8
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 2.1e-19 98.6 87 57.5
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 2.1e-19 98.6 87 58.6
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 4.6e-19 97.4 86 58.1
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 6.0e-19 97.1 70 68.6
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 7.8e-19 96.7 87 57.5
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 1.0e-18 96.3 53 88.7
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.0e-18 96.3 87 58.6
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.3e-18 95.9 53 86.8
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.3e-18 95.9 53 86.8
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 1.7e-18 95.5 51 90.2
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 2.3e-18 95.1 84 60.7
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.3e-18 95.1 51 90.2
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 3.9e-18 94.4 50 92.0
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 5.1e-18 94.0 51 88.2
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 6.6e-18 93.6 53 84.9
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 6.6e-18 93.6 55 80.0
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 8.6e-18 93.2 50 90.0
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 1.5e-17 92.4 51 86.3
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.5e-17 92.4 51 86.3
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 1.9e-17 92.0 51 88.2
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 1.9e-17 92.0 51 88.2
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.9e-17 92.0 51 84.3
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 2.5e-17 91.7 87 55.2
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 2.5e-17 91.7 51 84.3
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 4.3e-17 90.9 51 82.4
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 4.3e-17 90.9 87 56.3
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 5.6e-17 90.5 52 84.6
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 5.6e-17 90.5 46 87.0
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 5.6e-17 90.5 70 65.7
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 5.6e-17 90.5 51 84.3
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 7.3e-17 90.1 46 84.8
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 9.5e-17 89.7 70 65.7
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.2e-16 89.4 46 87.0
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.2e-16 89.4 49 87.8
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 2.1e-16 88.6 87 54.0
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 2.8e-16 88.2 51 80.4
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 2.8e-16 88.2 49 85.7
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 4.7e-16 87.4 54 74.1
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 4.7e-16 87.4 47 91.5
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 4.7e-16 87.4 47 91.5
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 6.2e-16 87.0 49 85.7
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 6.2e-16 87.0 71 64.8
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 8.1e-16 86.7 46 95.7
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.4e-15 85.9 87 52.9
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 3.1e-15 84.7 48 77.1
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.0e-15 84.3 40 90.0
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 4.0e-15 84.3 40 90.0
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 4.0e-15 84.3 67 53.7
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 5.2e-15 84.0 87 51.7
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 6.8e-15 83.6 87 51.7
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 1.2e-14 82.8 87 51.7
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 2.0e-14 82.0 71 57.7
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 2.6e-14 81.6 46 84.8
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 3.4e-14 81.3 46 78.3
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 4.4e-14 80.9 48 81.2
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 5.8e-14 80.5 44 88.6
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 7.5e-14 80.1 87 49.4
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 9.9e-14 79.7 84 51.2
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.3e-13 79.3 45 86.7
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.3e-13 79.3 84 50.0
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 2.2e-13 78.6 84 48.8
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 3.7e-13 77.8 63 49.2
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.7e-13 77.8 47 74.5
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 4.9e-13 77.4 82 51.2
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 8.3e-13 76.6 47 78.7
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 1.1e-12 76.3 46 80.4
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 1.2e-11 72.8 66 51.5
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 2.7e-11 71.6 68 55.9
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 3.5e-11 71.2 47 72.3
TWI18G0205 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 7.8e-11 70.1 67 52.2
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 1.5e-09 65.9 63 57.1
BcaC06g31020 Brassica carinata HOM05D005515 ORTHO05D006620 2.5e-09 65.1 57 52.6
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 2.5e-09 65.1 40 77.5
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 3.3e-09 64.7 39 79.5
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 3.3e-09 64.7 71 49.3
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 4.3e-09 64.3 70 47.1
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 2.8e-08 61.6 39 74.4
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 1.8e-07 58.9 39 74.4
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 5.2e-07 57.4 39 69.2
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 5.2e-07 57.4 39 69.2
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 5.2e-07 57.4 38 71.1
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 6.8e-07 57.0 50 60.0
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 8.9e-07 56.6 28 89.3
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 1.2e-06 56.2 38 68.4
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.5e-06 55.8 27 88.9
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 3.4e-06 54.7 34 76.5
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 9.9e-06 53.1 38 65.8
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 9.9e-06 53.1 42 57.1


User provided reference genes

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