Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p053676 Quercus lobata HOM05D002263 ORTHO05D003537 6.7e-73 277.3 147 100.0
QL08p003465 Quercus lobata HOM05D002263 ORTHO05D012916 1.5e-69 266.2 147 95.9
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 2.1e-66 255.8 142 95.1
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 2.1e-66 255.8 142 95.1
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 8.7e-65 250.4 139 95.7
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 8.7e-65 250.4 139 95.7
QL08p021041 Quercus lobata HOM05D002263 ORTHO05D012916 1.1e-64 250.0 139 95.0
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-64 248.8 139 95.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 3.3e-64 248.4 142 92.3
QL02p043717 Quercus lobata HOM05D002263 ORTHO05D012916 3.7e-63 245.0 139 92.8
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 6.9e-62 240.7 142 90.1
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 7.4e-56 220.7 122 95.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.2e-53 213.4 142 81.7
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.0e-52 210.3 142 81.0
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.2e-47 192.6 142 73.2
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 2.8e-47 192.2 142 73.2
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 3.7e-47 191.8 143 69.9
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 4.8e-47 191.4 141 72.3
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.4e-46 189.9 142 71.1
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 5.3e-46 188.0 142 71.1
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 5.3e-46 188.0 142 70.4
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 5.3e-46 188.0 140 72.1
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 9.1e-46 187.2 143 71.3
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 9.1e-46 187.2 142 70.4
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 9.1e-46 187.2 142 70.4
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 9.1e-46 187.2 142 70.4
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 9.1e-46 187.2 142 70.4
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.5e-45 186.4 142 70.4
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.0e-45 186.0 142 69.7
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.0e-45 186.0 143 68.5
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.0e-45 186.0 143 68.5
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 2.6e-45 185.7 142 70.4
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 3.4e-45 185.3 142 70.4
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 4.5e-45 184.9 142 71.1
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 5.9e-45 184.5 142 69.7
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 7.7e-45 184.1 142 69.7
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.7e-45 184.1 142 69.0
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 2.9e-44 182.2 142 67.6
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.9e-44 182.2 144 66.7
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 5.0e-44 181.4 141 68.1
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 6.5e-44 181.0 142 66.9
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.1e-43 180.3 142 67.6
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.4e-43 179.9 144 67.4
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 4.2e-43 178.3 142 66.2
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 4.2e-43 178.3 142 66.9
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 5.5e-43 177.9 144 68.1
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 7.2e-43 177.6 142 69.0
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 9.4e-43 177.2 136 67.6
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.6e-42 175.3 142 67.6
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 4.7e-42 174.9 142 67.6
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 4.4e-40 168.3 142 64.1
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.3e-39 166.8 142 63.4
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 3.7e-39 165.2 142 62.0
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 6.3e-39 164.5 146 61.6
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 8.2e-39 164.1 143 61.5
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.8e-38 162.9 142 62.7
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.8e-38 162.9 141 66.0
Sabra09G0043300 Salix brachista HOM05D002263 ORTHO05D003537 2.4e-38 162.5 141 66.0
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.1e-38 162.2 143 60.8
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 4.1e-38 161.8 142 63.4
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 9.1e-38 160.6 143 61.5
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 9.1e-38 160.6 132 65.2
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 9.1e-38 160.6 143 60.1
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 1.2e-37 160.2 140 59.3
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.2e-37 160.2 142 64.8
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 2.0e-37 159.5 143 60.1
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 5.9e-37 157.9 144 59.0
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 1.0e-36 157.1 144 56.9
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.0e-36 157.1 135 63.0
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.0e-36 157.1 135 63.0
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 2.2e-36 156.0 145 58.6
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 2.9e-36 155.6 143 58.7
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 5.0e-36 154.8 143 58.0
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 5.0e-36 154.8 134 60.4
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 8.5e-36 154.1 142 57.0
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.1e-35 153.7 144 57.6
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 1.1e-35 153.7 145 55.9
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 1.1e-35 153.7 145 55.9
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.1e-35 153.7 145 55.9
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 1.1e-35 153.7 143 56.6
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 1.5e-35 153.3 144 56.2
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.9e-35 152.9 141 60.3
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.5e-35 152.5 143 60.1
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 4.2e-35 151.8 142 59.2
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 2.1e-34 149.4 136 60.3
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.8e-33 146.4 143 55.2
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 6.7e-33 144.4 103 75.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 8.8e-33 144.1 145 53.8
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 2.6e-32 142.5 146 53.4
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.3e-32 142.1 148 51.4
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 5.7e-32 141.4 143 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.7e-31 139.8 145 54.5
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.8e-31 139.0 142 53.5
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 3.7e-31 138.7 138 56.5
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.7e-31 138.7 135 57.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.7e-31 138.7 135 57.0
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 4.8e-31 138.3 138 56.5
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 8.2e-31 137.5 140 55.7
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 1.8e-30 136.3 145 51.0
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 4.1e-30 135.2 140 54.3
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 7.0e-30 134.4 145 51.0
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 9.1e-30 134.0 141 52.5
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-29 133.7 134 56.7
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.2e-29 133.7 141 51.8
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.2e-29 133.7 141 51.8
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 1.2e-29 133.7 145 51.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.6e-29 133.3 134 56.0
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 5.9e-29 131.3 143 50.3
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 7.7e-29 131.0 136 54.4
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.2e-28 129.4 148 49.3
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 2.9e-28 129.0 141 52.5
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 3.8e-28 128.6 146 49.3
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 3.8e-28 128.6 142 52.8
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 5.0e-28 128.3 146 50.7
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 6.5e-28 127.9 145 50.3
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.5e-27 126.7 135 53.3
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.5e-27 126.7 142 50.7
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 3.2e-27 125.6 143 47.6
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 4.2e-27 125.2 134 55.2
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.2e-27 125.2 135 56.3
SEGI_34540 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 4.2e-27 125.2 139 48.9
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 5.5e-27 124.8 145 51.7
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 5.5e-27 124.8 141 52.5
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 9.4e-27 124.0 127 55.9
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.6e-26 122.1 135 53.3
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 8.0e-26 120.9 140 51.4
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.4e-25 120.2 141 51.8
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 5.2e-25 118.2 143 49.0
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 6.8e-25 117.9 135 51.1
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 2.0e-24 116.3 135 48.9
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.0e-24 116.3 146 50.0
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 4.4e-24 115.2 141 47.5
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.3e-23 113.6 143 48.3
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 1.7e-23 113.2 161 43.5
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 1.7e-23 113.2 163 45.4
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.7e-23 113.2 133 50.4
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 2.2e-23 112.8 151 45.7
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 2.2e-23 112.8 153 43.8
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 4.1e-22 108.6 141 47.5
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 3.8e-20 102.1 130 46.9
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 1.9e-19 99.8 135 45.2
QL04p008050 Quercus lobata HOM05D002263 ORTHO05D012916 3.6e-18 95.5 55 85.5
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.0e-17 94.0 140 43.6
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 2.3e-17 92.8 155 39.4
MBI05_g27107_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.3e-17 92.8 105 54.3
QL03p030217 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-16 90.5 53 81.1
AL3G19410 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 9.8e-16 87.4 106 48.1
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 9.8e-16 87.4 146 39.0
SHI19944 Sapria himalayana HOM05D002263 ORTHO05D003537 1.3e-15 87.0 135 42.2
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 2.2e-15 86.3 138 38.4
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 2.8e-15 85.9 136 33.8
AL3G19320 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.8e-14 83.2 117 41.0
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 7.0e-14 81.3 83 51.8
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 2.5e-11 72.8 135 37.0
EL10As2g23282 Beta vulgaris HOM05D002263 ORTHO05D012916 1.2e-08 63.9 64 48.4
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 9.8e-08 60.8 139 34.5
Glyma.18G171700 Glycine max HOM05D000134 ORTHO05D000168 6.4e-07 58.2 43 62.8


User provided reference genes

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