Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p020532 Quercus lobata HOM05D004284 ORTHO05D006610 5.9e-73 277.3 130 100.0
QL02p050982 Quercus lobata HOM05D004284 ORTHO05D006610 3.8e-72 274.6 130 99.2
QL11p046610 Quercus lobata HOM05D004284 ORTHO05D006610 2.7e-65 251.9 119 97.5
Haze_02227 Corylus avellana HOM05D004284 ORTHO05D006610 3.3e-47 191.8 123 72.4
Cfa005121 Carpinus fangiana HOM05D004284 ORTHO05D006610 9.5e-47 190.3 123 72.4
Dinv23446 Davidia involucrata HOM05D004284 ORTHO05D006610 1.6e-46 189.5 119 73.1
CiPaw.05G074300 Carya illinoinensis HOM05D004284 ORTHO05D006610 4.0e-45 184.9 119 71.4
MD05G1054400 Malus domestica HOM05D004284 ORTHO05D006610 1.5e-44 183.0 119 73.1
RcHm_v2.0_Chr6g0268371 Rosa chinensis HOM05D004284 ORTHO05D006610 5.8e-44 181.0 118 70.3
Ciclev10027934m.g Citrus clementina HOM05D004284 ORTHO05D006610 7.5e-44 180.6 121 69.4
Prupe.8G082800 Prunus persica HOM05D004284 ORTHO05D006610 7.5e-44 180.6 120 71.7
CSS0013523 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.7e-43 179.5 122 68.0
MD10G1062000 Malus domestica HOM05D004284 ORTHO05D006610 1.7e-43 179.5 119 72.3
PGR042G3704 Punica granatum HOM05D004284 ORTHO05D006610 4.9e-43 177.9 122 68.0
CANSAT11G1394 Cannabis sativa HOM05D004284 ORTHO05D006610 8.3e-43 177.2 120 70.0
CSS0041983 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.1e-42 176.8 120 67.5
arahy.Tifrunner.gnm1.ann1.6AD899 Arachis hypogaea HOM05D004284 ORTHO05D006610 3.2e-42 175.3 124 66.9
arahy.Tifrunner.gnm1.ann1.835YPG Arachis hypogaea HOM05D004284 ORTHO05D006610 3.2e-42 175.3 121 68.6
FAN15G2871 Fragaria x ananassa HOM05D004284 ORTHO05D006610 3.2e-42 175.3 118 69.5
FAN24G2266 Fragaria x ananassa HOM05D004284 ORTHO05D006610 5.4e-42 174.5 118 68.6
Atru.chr5.3162 Acer truncatum HOM05D004284 ORTHO05D006610 9.2e-42 173.7 123 65.0
Atru.chr5.3174 Acer truncatum HOM05D004284 ORTHO05D006610 9.2e-42 173.7 123 65.0
FAN20G0619 Fragaria x ananassa HOM05D004284 ORTHO05D006610 9.2e-42 173.7 118 68.6
CsaV3_7G000530 Cucumis sativus L. HOM05D004284 ORTHO05D006610 1.2e-41 173.3 122 66.4
ClCG02G004440 Citrullus lanatus HOM05D004284 ORTHO05D006610 1.6e-41 172.9 128 65.6
MELO3C013406.2 Cucumis melo HOM05D004284 ORTHO05D006610 1.6e-41 172.9 122 66.4
FvH4_2g10690 Fragaria vesca HOM05D004284 ORTHO05D006610 2.0e-41 172.6 118 67.8
Sed0001411 Sechium edule HOM05D004284 ORTHO05D006610 2.0e-41 172.6 122 66.4
Lj1g0012810 Lotus japonicus HOM05D004284 ORTHO05D006610 4.6e-41 171.4 119 64.7
Potri.009G125500 Populus trichocarpa HOM05D004284 ORTHO05D006610 1.0e-40 170.2 117 70.1
TPR.G32210 Trifolium pratense HOM05D004284 ORTHO05D006610 1.3e-40 169.9 118 68.6
Ca_15330_v3 Cicer arietinum L. HOM05D004284 ORTHO05D006610 5.0e-40 167.9 120 64.2
Thecc.02G073500 Theobroma cacao HOM05D004284 ORTHO05D006610 8.6e-40 167.2 118 65.3
Actinidia00120 Actinidia chinensis HOM05D004284 ORTHO05D006610 1.1e-39 166.8 122 62.3
Duzib052G1007 Durio zibethinus HOM05D004284 ORTHO05D006610 1.1e-39 166.8 119 64.7
Lsat_1_v5_gn_8_126921 Lactuca sativa HOM05D004284 ORTHO05D006610 1.1e-39 166.8 120 62.5
TWI75G0546 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 1.5e-39 166.4 119 65.5
Manes.11G081200 Manihot esculenta HOM05D004284 ORTHO05D006610 1.9e-39 166.0 121 64.5
Eucgr.G01740 Eucalyptus grandis HOM05D004284 ORTHO05D006610 2.5e-39 165.6 120 60.8
Gorai.001G243900 Gossypium raimondii HOM05D004284 ORTHO05D006610 2.5e-39 165.6 118 64.4
Glyma.04G007400 Glycine max HOM05D004284 ORTHO05D006610 3.3e-39 165.2 122 63.9
Sabra09G0096500 Salix brachista HOM05D004284 ORTHO05D006610 3.3e-39 165.2 120 65.8
SGA_v2.0_scaffold58G20431 Striga asiatica HOM05D004284 ORTHO05D006610 5.6e-39 164.5 129 59.7
Actinidia20651 Actinidia chinensis HOM05D004284 ORTHO05D006610 7.3e-39 164.1 116 64.7
COL.COLO4_10617 Corchorus olitorius HOM05D004284 ORTHO05D006610 7.3e-39 164.1 119 63.0
DCAR_022791 Daucus carota HOM05D004284 ORTHO05D006610 7.3e-39 164.1 121 61.2
Rhsim11G0184600 Rhododendron simsii HOM05D004284 ORTHO05D006610 7.3e-39 164.1 123 61.8
MSTRG.20021 Avicennia marina HOM05D004284 ORTHO05D006610 9.5e-39 163.7 122 62.3
Gohir.D13G090800 Gossypium hirsutum HOM05D004284 ORTHO05D006610 9.5e-39 163.7 118 63.6
Oeu055646.2 Olea europaea HOM05D004284 ORTHO05D006610 1.6e-38 162.9 119 64.7
Gohir.A13G086645 Gossypium hirsutum HOM05D004284 ORTHO05D006610 2.8e-38 162.2 118 64.4
MBI05_g26520_MAGBIO Magnolia biondii HOM05D004284 ORTHO05D006610 3.6e-38 161.8 120 65.0
Cpa.g.sc150.6 Carica papaya HOM05D004284 ORTHO05D006610 4.7e-38 161.4 120 62.5
TWI79G1346 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 4.7e-38 161.4 119 61.3
Sc18g0005440 Simmondsia chinensis HOM05D004284 ORTHO05D006610 6.2e-38 161.0 118 61.9
TWI79G0275 Tripterygium wilfordii HOM05D004284 ORTHO05D006610 1.1e-37 160.2 119 60.5
Duzib132G0815 Durio zibethinus HOM05D004284 ORTHO05D006610 1.4e-37 159.8 119 60.5
Peaxi162Scf00362g11100 Petunia axillaris HOM05D004284 ORTHO05D006610 1.4e-37 159.8 119 59.7
Hund00182 Selenicereus undatus HOM05D004284 ORTHO05D006610 1.4e-37 159.8 120 62.5
TAR376G0598 Trochodendron aralioides HOM05D004284 ORTHO05D006610 1.4e-37 159.8 122 61.5
ECA233G5694 Erigeron canadensis HOM05D004284 ORTHO05D006610 1.8e-37 159.5 119 59.7
Nitab4.5_0002096g0020 Nicotiana tabacum HOM05D004284 ORTHO05D006610 1.8e-37 159.5 118 64.4
Lj5A188T39 Lonicera japonica HOM05D004284 ORTHO05D006610 4.0e-37 158.3 118 63.6
Hund00174 Selenicereus undatus HOM05D004284 ORTHO05D006610 4.0e-37 158.3 120 61.7
GSVIVG01024158001 Vitis vinifera HOM05D004284 ORTHO05D006610 1.5e-36 156.4 122 62.3
Sopen01g052620 Solanum pennellii HOM05D004284 ORTHO05D006610 2.0e-36 156.0 118 62.7
vmacro02047 Vaccinium macrocarpon HOM05D004284 ORTHO05D006610 2.0e-36 156.0 119 59.7
Nn6g32279 Nelumbo nucifera HOM05D004284 ORTHO05D006610 9.8e-36 153.7 119 60.5
Solyc01g110490.4 Solanum lycopersicum HOM05D004284 ORTHO05D006610 9.8e-36 153.7 121 61.2
CAN.G1329.2 Capsicum annuum HOM05D004284 ORTHO05D006610 1.3e-35 153.3 116 62.1
HanXRQChr17g0557281 Helianthus annuus HOM05D004284 ORTHO05D006610 1.3e-35 153.3 120 59.2
AUR62016852 Chenopodium quinoa HOM05D004284 ORTHO05D006610 1.7e-35 152.9 116 58.6
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 2.2e-35 152.5 119 58.8
PGSC0003DMG400001658 Solanum tuberosum HOM05D004284 ORTHO05D006610 2.2e-35 152.5 118 61.9
THA.LOC104824786 Tarenaya hassleriana HOM05D004284 ORTHO05D006610 2.9e-35 152.1 118 61.0
Migut.B00123 Erythranthe guttata HOM05D004284 ORTHO05D006610 3.7e-35 151.8 123 57.7
Aa31LG6G16360 Aethionema arabicum HOM05D004284 ORTHO05D006610 4.9e-35 151.4 118 61.9
EL10Ac9g21612 Beta vulgaris HOM05D004284 ORTHO05D006610 6.4e-35 151.0 120 57.5
AUR62010367 Chenopodium quinoa HOM05D004284 ORTHO05D006610 1.4e-34 149.8 116 56.9
Thhalv10024574m.g Eutrema salsugineum HOM05D004284 ORTHO05D006610 1.9e-34 149.4 118 61.0
CARHR247870 Cardamine hirsuta HOM05D004284 ORTHO05D006610 2.4e-34 149.1 120 58.3
PSO675G4636 Papaver somniferum HOM05D004284 ORTHO05D006610 2.4e-34 149.1 118 60.2
Sp7g36950 Schrenkiella parvula HOM05D004284 ORTHO05D006610 3.2e-34 148.7 118 57.6
Phvul.009G002300 Phaseolus vulgaris HOM05D004284 ORTHO05D006610 4.1e-34 148.3 119 60.5
AL7G10770 Arabidopsis lyrata HOM05D004284 ORTHO05D006610 5.4e-34 147.9 118 57.6
SHI05642 Sapria himalayana HOM05D004284 ORTHO05D006610 1.2e-33 146.7 117 59.0
Carub.0007s0074 Capsella rubella HOM05D004284 ORTHO05D006610 2.7e-33 145.6 118 55.1
PSO541G2222 Papaver somniferum HOM05D004284 ORTHO05D006610 3.5e-33 145.2 119 58.0
Peaxi162Scf00016g00034 Petunia axillaris HOM05D004284 ORTHO05D006610 1.0e-32 143.7 105 59.0
BolC1t00022H Brassica oleracea HOM05D004284 ORTHO05D006610 2.3e-32 142.5 118 56.8
A01p00130 Brassica napus HOM05D004284 ORTHO05D006610 3.0e-32 142.1 118 55.1
C01p00170 Brassica napus HOM05D004284 ORTHO05D006610 3.0e-32 142.1 118 56.8
AT4G38890 Arabidopsis thaliana HOM05D004284 ORTHO05D006610 3.9e-32 141.7 118 57.6
Os04g0117600 Oryza sativa ssp. japonica HOM05D004284 ORTHO05D006610 6.6e-32 141.0 116 55.2
SEGI_09605 Sequoiadendron giganteum HOM05D004284 ORTHO05D006610 6.6e-32 141.0 119 53.8
VMungo1309G1744 Vigna mungo HOM05D004284 ORTHO05D006610 6.6e-32 141.0 125 56.0
BraA01t00017Z Brassica rapa HOM05D004284 ORTHO05D006610 2.5e-31 139.0 118 54.2
Pp3c4_14410 Physcomitrium patens HOM05D004284 ORTHO05D006610 5.6e-31 137.9 126 54.0
Mapoly0159s0020 Marchantia polymorpha HOM05D004284 ORTHO05D006610 1.6e-30 136.3 124 54.0
ATR0147G023 Amborella trichopoda HOM05D004284 ORTHO05D006610 2.1e-30 136.0 120 52.5
CDE02G2842 Ceratophyllum demersum HOM05D004284 ORTHO05D006610 3.6e-30 135.2 119 57.1
Medtr3g117580 Medicago truncatula HOM05D004284 ORTHO05D006610 2.3e-29 132.5 119 54.6
HPP92_014972 Vanilla planifolia HOM05D004284 ORTHO05D006610 3.4e-28 128.6 118 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2393 Anthoceros agrestis HOM05D004284 ORTHO05D006610 5.8e-28 127.9 123 52.0
Nitab4.5_0010885g0030 Nicotiana tabacum HOM05D004284 ORTHO05D006610 5.8e-28 127.9 94 66.0
Aqoxy3G00712 Aquilegia oxysepala HOM05D004284 ORTHO05D006610 1.7e-27 126.3 119 55.5
SMO119G0149 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 6.4e-27 124.4 121 47.1
SMO119G0196 Selaginella moellendorffii HOM05D004284 ORTHO05D006610 8.3e-27 124.0 124 46.0
Cc02_g16820 Coffea canephora HOM05D004284 ORTHO05D006610 4.1e-26 121.7 117 53.8
Zm00001eb419910 Zea mays HOM05D004284 ORTHO05D006610 4.1e-26 121.7 120 47.5
RcHm_v2.0_Chr6g0271641 Rosa chinensis HOM05D004284 ORTHO05D006610 1.2e-25 120.2 81 70.4
Lalb_Chr11g0061291 Lupinus albus HOM05D004284 ORTHO05D006610 1.5e-23 113.2 118 46.6
Gorai.004G070900 Gossypium raimondii HOM05D004284 ORTHO05D006610 4.7e-22 108.2 80 63.8
Glyma.07G116066 Glycine max HOM05D004284 ORTHO05D006610 8.1e-22 107.5 83 56.6
RcHm_v2.0_Chr6g0268431 Rosa chinensis HOM05D004284 ORTHO05D006610 2.1e-17 92.8 65 69.2
PRCOL_00002812 Prasinoderma coloniale HOM05D004284 ORTHO05D006610 5.1e-16 88.2 122 37.7
Actinidia27851 Actinidia chinensis HOM05D004284 ORTHO05D019443 2.6e-12 75.9 54 55.6
MCO09G016 Micromonas commoda HOM05D004284 ORTHO05D006610 3.8e-11 72.0 154 31.2
CBR_g29609 Chara braunii HOM05D004284 ORTHO05D006610 1.9e-10 69.7 74 39.2
RcHm_v2.0_Chr6g0271631 Rosa chinensis HOM05D004284 ORTHO05D019443 1.0e-08 63.9 37 67.6
unitig_22.g6224 Utricularia gibba HOM05D004284 ORTHO05D006610 5.6e-07 58.2 46 69.6
CSS0028050 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D006610 1.6e-06 56.6 29 89.7
Cre04.g229948 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D006610 1.6e-06 56.6 149 26.8


User provided reference genes

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