Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p014306 Quercus lobata HOM05D003128 ORTHO05D037442 4.8e-55 217.6 113 100.0
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 1.4e-14 83.2 49 85.7
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 6.0e-13 77.8 52 78.8
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.0e-12 77.0 62 71.0
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 2.3e-12 75.9 62 71.0
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 3.0e-12 75.5 62 71.0
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 3.0e-12 75.5 62 71.0
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 3.0e-12 75.5 62 71.0
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 3.0e-12 75.5 62 71.0
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 3.0e-12 75.5 62 69.4
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 3.9e-12 75.1 62 71.0
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 3.9e-12 75.1 62 71.0
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 5.0e-12 74.7 87 54.0
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 5.0e-12 74.7 62 71.0
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 6.6e-12 74.3 62 67.7
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 6.6e-12 74.3 62 71.0
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 6.6e-12 74.3 62 69.4
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 6.6e-12 74.3 87 52.9
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 6.6e-12 74.3 62 69.4
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 6.6e-12 74.3 62 69.4
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 8.6e-12 73.9 87 50.6
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 8.6e-12 73.9 62 69.4
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 8.6e-12 73.9 62 69.4
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 1.1e-11 73.6 62 69.4
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 1.1e-11 73.6 62 67.7
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 1.5e-11 73.2 62 67.7
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.5e-11 73.2 62 67.7
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 1.5e-11 73.2 62 71.0
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.9e-11 72.8 87 50.6
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 1.9e-11 72.8 62 67.7
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.9e-11 72.8 62 67.7
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 1.9e-11 72.8 62 67.7
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 1.9e-11 72.8 62 67.7
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 1.9e-11 72.8 62 69.4
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.9e-11 72.8 62 67.7
Actinidia04640 Actinidia chinensis HOM05D003128 ORTHO05D004333 2.5e-11 72.4 62 69.4
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 2.5e-11 72.4 62 67.7
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 2.5e-11 72.4 62 69.4
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 2.5e-11 72.4 62 67.7
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.5e-11 72.4 87 54.0
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.5e-11 72.4 62 67.7
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 2.5e-11 72.4 62 66.1
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 3.3e-11 72.0 62 66.1
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 3.3e-11 72.0 62 67.7
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 4.3e-11 71.6 87 48.3
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 4.3e-11 71.6 62 67.7
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 4.3e-11 71.6 62 66.1
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 4.3e-11 71.6 62 66.1
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 66.1
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 66.1
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 66.1
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 64.5
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 67.7
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 67.7
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 67.7
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 5.6e-11 71.2 87 49.4
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 67.7
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 66.1
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 66.1
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 5.6e-11 71.2 62 66.1
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 7.3e-11 70.9 87 50.6
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 7.3e-11 70.9 62 69.4
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 9.5e-11 70.5 82 52.4
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 1.6e-10 69.7 62 64.5
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.6e-10 69.7 82 51.2
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.6e-10 69.7 82 51.2
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 2.1e-10 69.3 82 50.0
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 2.1e-10 69.3 62 66.1
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 2.1e-10 69.3 62 66.1
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.1e-10 69.3 82 50.0
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 2.8e-10 68.9 62 64.5
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 2.8e-10 68.9 82 50.0
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.8e-10 68.9 82 50.0
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 2.8e-10 68.9 62 66.1
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 3.6e-10 68.6 62 66.1
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 61.3
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 66.1
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 61.3
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 61.3
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 4.7e-10 68.2 91 48.4
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 61.3
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 64.5
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 61.3
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 4.7e-10 68.2 62 62.9
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 6.2e-10 67.8 62 62.9
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 8.1e-10 67.4 82 50.0
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 8.1e-10 67.4 62 64.5
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 8.1e-10 67.4 62 62.9
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 1.1e-09 67.0 62 64.5
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.1e-09 67.0 82 48.8
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 1.1e-09 67.0 62 64.5
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 1.4e-09 66.6 61 62.3
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.8e-09 66.2 62 59.7
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 2.3e-09 65.9 62 64.5
SEGI_25321 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 3.1e-09 65.5 62 62.9
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 3.1e-09 65.5 78 53.8
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.1e-09 65.5 62 61.3
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.0e-09 65.1 62 58.1
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 4.0e-09 65.1 62 59.7
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 5.2e-09 64.7 87 46.0
ECA236G4711 Erigeron canadensis HOM05D003128 ORTHO05D004333 5.2e-09 64.7 62 62.9
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 6.8e-09 64.3 62 61.3
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 6.8e-09 64.3 62 61.3
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 8.9e-09 63.9 62 62.9
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 8.9e-09 63.9 62 59.7
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 8.9e-09 63.9 62 59.7
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 1.2e-08 63.5 62 64.5
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 1.2e-08 63.5 62 61.3
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.5e-08 63.2 58 67.2
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.5e-08 63.2 62 61.3
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 2.0e-08 62.8 61 62.3
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 2.6e-08 62.4 61 60.7
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 3.4e-08 62.0 61 60.7
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 4.4e-08 61.6 62 61.3
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 5.8e-08 61.2 62 59.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 5.8e-08 61.2 62 58.1
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 7.5e-08 60.8 62 58.1
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 7.5e-08 60.8 62 58.1
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.3e-07 60.1 62 58.1
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.7e-07 59.7 62 58.1
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 1.7e-07 59.7 61 55.7
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 2.2e-07 59.3 61 57.4
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 2.2e-07 59.3 62 58.1
CAN.G807.5 Capsicum annuum HOM05D003128 ORTHO05D000002 2.9e-07 58.9 90 41.1
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 2.9e-07 58.9 62 54.8
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 2.9e-07 58.9 62 56.5
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 3.7e-07 58.5 77 46.8
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.9e-07 58.2 62 58.1
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 4.9e-07 58.2 87 43.7
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 6.4e-07 57.8 62 56.5
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.3e-07 57.4 62 56.5
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.3e-07 57.4 62 56.5
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.4e-06 56.6 62 54.8
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 3.2e-06 55.5 61 54.1
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 4.1e-06 55.1 62 53.2
RhsimUnG0209100 Rhododendron simsii HOM05D003128 ORTHO05D037442 5.4e-06 54.7 52 57.7
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 7.1e-06 54.3 62 53.2


User provided reference genes

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