Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 5.7e-272 940.3 455 100.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.4e-190 669.8 455 74.1
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 1.7e-175 619.8 455 69.9
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 2.7e-173 612.5 455 67.3
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 5.8e-168 594.7 565 58.1
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 3.0e-164 582.4 453 64.2
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 1.6e-162 576.6 455 64.4
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.4e-161 573.5 453 63.4
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 6.5e-159 564.7 455 63.7
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 4.2e-158 562.0 458 63.1
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 7.9e-157 557.8 454 63.4
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 1.5e-155 553.5 456 61.4
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 1.5e-155 553.5 458 62.9
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 1.9e-155 553.1 455 63.7
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 9.7e-155 550.8 453 61.8
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 6.3e-154 548.1 455 61.8
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 2.4e-153 546.2 473 60.3
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 4.1e-153 545.4 466 60.1
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 4.5e-152 542.0 462 61.3
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 5.5e-150 535.0 479 57.8
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 7.2e-150 534.6 453 60.3
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 9.4e-150 534.3 455 60.9
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 1.5e-147 526.9 538 52.4
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 3.3e-147 525.8 462 59.1
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 7.4e-147 524.6 454 58.8
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.1e-145 520.8 462 58.7
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.4e-145 519.6 459 58.6
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 9.1e-145 517.7 450 59.1
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.2e-144 517.3 462 58.4
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.5e-144 516.9 422 61.6
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 2.0e-144 516.5 479 57.8
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 2.6e-144 516.2 454 58.6
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 1.0e-143 514.2 455 59.1
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.0e-143 514.2 455 58.9
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 3.8e-143 512.3 454 57.5
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 5.0e-143 511.9 483 57.1
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 6.5e-143 511.5 454 56.6
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 8.5e-143 511.1 463 58.3
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 1.4e-142 510.4 455 57.1
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 3.2e-142 509.2 452 57.3
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 3.2e-142 509.2 492 55.1
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 3.2e-142 509.2 454 57.5
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 4.2e-142 508.8 452 57.5
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 8.0e-141 504.6 474 56.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.0e-140 504.2 488 55.1
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 1.0e-140 504.2 452 57.7
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 1.4e-140 503.8 454 57.5
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 5.2e-140 501.9 454 56.6
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 5.2e-140 501.9 457 57.8
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 6.7e-140 501.5 457 58.4
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 6.7e-140 501.5 454 56.8
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 6.7e-140 501.5 454 57.5
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 3.3e-139 499.2 455 56.3
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 3.3e-139 499.2 455 57.6
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 4.4e-139 498.8 454 57.3
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 4.4e-139 498.8 453 58.1
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 7.4e-139 498.0 454 57.3
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 9.7e-139 497.7 454 56.8
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 9.7e-139 497.7 454 56.8
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 9.7e-139 497.7 455 56.9
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 2.2e-138 496.5 458 56.8
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 6.3e-138 495.0 455 56.7
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 1.1e-137 494.2 459 56.6
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.8e-137 493.4 454 56.4
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 1.8e-137 493.4 455 56.5
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.2e-136 490.7 455 56.3
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 4.2e-134 482.3 430 59.1
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 2.7e-133 479.6 452 55.1
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 2.0e-131 473.4 456 56.6
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 1.7e-130 470.3 453 54.1
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 1.8e-129 466.8 458 56.1
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 6.1e-125 451.8 440 54.5
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 1.5e-123 447.2 434 56.0
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 1.3e-122 444.1 456 53.1
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 1.7e-122 443.7 567 46.0
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 3.1e-121 439.5 469 50.7
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 7.0e-121 438.3 445 52.1
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 2.3e-119 433.3 452 48.7
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 1.6e-117 427.2 453 50.3
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 4.0e-116 422.5 453 52.3
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 9.8e-115 417.9 455 49.5
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 2.8e-114 416.4 375 58.9
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 3.5e-112 409.5 453 46.8
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.0e-111 407.9 484 48.8
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 1.3e-111 407.5 457 46.4
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 6.1e-109 398.7 456 47.4
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.9e-98 362.5 482 44.8
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 5.8e-91 339.0 400 46.0
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 4.9e-90 335.9 349 51.9
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 4.1e-89 332.8 285 58.9
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 9.2e-81 305.1 457 42.9
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 2.3e-79 300.4 453 38.2
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 6.6e-79 298.9 361 46.0
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 9.0e-76 288.5 452 37.2
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 7.6e-75 285.4 241 61.8
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 7.1e-73 278.9 242 59.9
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 1.6e-72 277.7 236 59.7
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 1.7e-71 274.2 452 37.4
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 1.3e-69 268.1 285 50.2
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 3.8e-66 256.5 254 53.1
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 7.1e-65 252.3 437 39.1
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.9e-62 244.2 235 51.5
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 7.9e-56 222.2 213 52.6
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 1.0e-55 221.9 163 65.6
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 3.9e-55 219.9 208 54.8
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.1e-52 211.8 450 35.3
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 1.3e-50 204.9 152 64.5
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 7.9e-48 195.7 453 33.8
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 2.6e-43 180.6 628 25.6
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 5.9e-43 179.5 99 81.8
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 4.2e-41 173.3 272 37.9
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.6e-40 171.4 188 51.1
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.6e-40 171.4 204 47.5
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.6e-40 169.9 253 41.9
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.0e-39 168.7 181 50.3
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 3.1e-36 157.1 320 32.2
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 2.7e-32 144.1 79 86.1
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 6.1e-32 142.9 460 27.8
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 4.4e-30 136.7 137 51.8
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 7.4e-30 136.0 232 39.7
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 7.4e-30 136.0 232 39.7
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-29 135.2 274 35.8
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 2.1e-24 117.9 489 25.2
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 8.2e-21 105.9 230 30.4
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 1.7e-18 98.2 54 83.3
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.2e-16 92.0 53 77.4
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 1.2e-14 85.5 64 53.1
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.0e-10 72.4 148 35.1
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 3.2e-09 67.4 55 56.4
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 7.2e-09 66.2 40 70.0
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 5.2e-07 60.1 38 60.5
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.0e-06 58.2 32 84.4
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 5.7e-06 56.6 27 85.2


User provided reference genes

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