Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p048235 Quercus lobata HOM05D004200 ORTHO05D004996 2.6e-165 585.5 331 100.0
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 1.9e-83 313.5 175 94.3
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 2.5e-83 313.2 175 94.3
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 5.5e-83 312.0 175 93.1
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 1.4e-81 307.4 175 90.3
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 3.0e-81 306.2 175 90.9
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 5.1e-81 305.4 175 91.4
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 2.6e-80 303.1 175 91.4
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 4.4e-80 302.4 177 89.8
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 4.4e-80 302.4 177 89.8
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 7.4e-80 301.6 177 87.0
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 7.4e-80 301.6 175 90.3
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 9.7e-80 301.2 175 89.1
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 9.7e-80 301.2 175 89.1
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 2.2e-79 300.1 175 89.1
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 2.8e-79 299.7 175 88.6
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 8.2e-79 298.1 175 88.0
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 1.1e-78 297.7 175 89.1
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 1.8e-78 297.0 175 89.7
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 2.4e-78 296.6 175 88.0
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 4.1e-78 295.8 175 88.6
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 4.1e-78 295.8 175 86.9
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 5.3e-78 295.4 175 88.6
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 7.0e-78 295.0 175 86.9
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 7.0e-78 295.0 175 88.0
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 7.0e-78 295.0 175 89.1
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 7.0e-78 295.0 175 88.0
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 7.0e-78 295.0 175 85.7
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 1.2e-77 294.3 175 89.1
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 1.2e-77 294.3 175 89.1
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 1.2e-77 294.3 176 89.2
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 1.2e-77 294.3 175 87.4
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 1.6e-77 293.9 172 89.5
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 1.6e-77 293.9 172 89.5
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 1.6e-77 293.9 176 89.8
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 2.0e-77 293.5 175 87.4
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 2.6e-77 293.1 175 86.9
EL10Ac4g10002 Beta vulgaris HOM05D004200 ORTHO05D004996 1.0e-76 291.2 175 86.9
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 1.3e-76 290.8 172 88.4
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 1.7e-76 290.4 176 88.6
Psat3g102400 Pisum sativum HOM05D004200 ORTHO05D004996 2.2e-76 290.0 175 86.9
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 2.2e-76 290.0 175 85.1
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 2.2e-76 290.0 175 86.3
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 2.9e-76 289.7 175 86.3
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 3.8e-76 289.3 175 86.3
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 3.8e-76 289.3 175 84.0
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 5.0e-76 288.9 176 87.5
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 5.0e-76 288.9 172 87.8
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 1.5e-75 287.3 175 84.0
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 4.2e-75 285.8 175 83.4
DCAR_030003 Daucus carota HOM05D004200 ORTHO05D004996 5.5e-75 285.4 175 86.3
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 5.5e-75 285.4 175 83.4
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 9.4e-75 284.6 175 84.0
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 9.4e-75 284.6 175 84.0
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 2.1e-74 283.5 175 85.1
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 2.7e-74 283.1 172 87.8
Atru.chr12.1727 Acer truncatum HOM05D004200 ORTHO05D004996 3.6e-74 282.7 175 84.6
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 4.7e-74 282.3 189 80.4
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 4.7e-74 282.3 175 82.3
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 4.7e-74 282.3 175 82.3
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 1.8e-73 280.4 173 87.3
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 4.0e-73 279.3 175 85.7
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 4.0e-73 279.3 172 86.0
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 5.2e-73 278.9 175 82.9
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 6.7e-73 278.5 175 84.0
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 1.1e-72 277.7 176 85.8
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 1.5e-72 277.3 175 85.1
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 1.5e-72 277.3 175 85.1
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 1.5e-72 277.3 175 85.1
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 4.4e-72 275.8 158 93.0
Lalb_Chr01g0020591 Lupinus albus HOM05D004200 ORTHO05D004996 4.4e-72 275.8 172 83.1
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 4.4e-72 275.8 175 83.4
TAR362G0304 Trochodendron aralioides HOM05D004200 ORTHO05D004996 5.7e-72 275.4 176 85.2
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.7e-71 273.9 175 81.1
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.7e-71 273.9 175 81.7
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 2.8e-71 273.1 175 81.7
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.4e-70 270.8 180 82.2
Lj1C579T11 Lonicera japonica HOM05D004200 ORTHO05D004996 1.8e-70 270.4 210 72.4
MSTRG.8204 Avicennia marina HOM05D004200 ORTHO05D004996 7.0e-70 268.5 175 81.7
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 7.0e-70 268.5 175 81.1
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 1.2e-69 267.7 176 81.8
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.6e-69 267.3 176 83.0
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 1.6e-69 267.3 184 78.8
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 1.6e-69 267.3 224 67.9
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 2.7e-69 266.5 176 81.8
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 4.5e-69 265.8 177 81.4
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 5.9e-69 265.4 176 82.4
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 5.9e-69 265.4 175 79.4
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 7.7e-69 265.0 175 79.4
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-68 264.2 175 80.6
FAN14G5194 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-68 264.2 175 80.6
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 2.2e-68 263.5 173 83.2
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 3.8e-68 262.7 158 86.1
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 5.0e-68 262.3 175 78.9
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 6.5e-68 261.9 175 77.7
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 6.5e-68 261.9 175 77.7
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 8.5e-68 261.5 175 78.3
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 1.1e-67 261.2 175 78.9
CARHR195770 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.1e-67 261.2 175 78.3
CARHR077380 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.5e-67 260.8 175 77.7
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.5e-67 260.8 175 77.1
AL6G28510 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 4.2e-67 259.2 175 78.9
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 5.5e-67 258.8 175 77.1
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 5.5e-67 258.8 175 77.1
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 5.5e-67 258.8 175 77.1
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 5.5e-67 258.8 175 77.1
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 5.5e-67 258.8 175 77.1
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 5.5e-67 258.8 173 79.2
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 7.2e-67 258.5 177 78.0
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 2.1e-66 256.9 175 77.1
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 3.6e-66 256.1 175 77.1
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 3.6e-66 256.1 175 77.1
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 4.7e-66 255.8 186 74.7
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.4e-65 254.2 175 77.1
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 2.3e-65 253.4 175 77.1
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 2.3e-65 253.4 175 76.6
Aa31LG11G12210 Aethionema arabicum HOM05D004200 ORTHO05D004996 5.2e-65 252.3 175 74.9
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 1.2e-64 251.1 175 76.6
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 1.2e-64 251.1 175 73.7
SGA_v2.0_scaffold340G49307 Striga asiatica HOM05D004200 ORTHO05D004996 2.0e-64 250.4 189 73.0
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 3.4e-64 249.6 175 76.0
SEGI_05832 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 5.7e-64 248.8 172 77.3
BraA03t10158Z Brassica rapa HOM05D004200 ORTHO05D004996 1.7e-63 247.3 178 73.0
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 3.7e-63 246.1 175 73.7
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 4.1e-62 242.7 158 81.6
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 1.7e-60 237.3 172 75.0
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 2.9e-60 236.5 175 71.4
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 1.1e-59 234.6 175 72.0
Pp3c16_8650 Physcomitrium patens HOM05D004200 ORTHO05D004996 1.9e-59 233.8 175 71.4
Pp3c25_5550 Physcomitrium patens HOM05D004200 ORTHO05D004996 1.6e-58 230.7 175 70.9
Sabra13G0078600 Salix brachista HOM05D004200 ORTHO05D004996 2.1e-58 230.3 195 66.2
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 2.7e-58 229.9 176 72.2
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 1.8e-57 227.3 175 69.7
AagrBONN_evm.TU.Sc2ySwM_368.146 Anthoceros agrestis HOM05D004200 ORTHO05D004996 3.0e-57 226.5 180 66.7
Mapoly0074s0043 Marchantia polymorpha HOM05D004200 ORTHO05D004996 1.5e-56 224.2 175 68.6
SEGI_12521 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 3.4e-56 223.0 173 69.4
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 2.7e-53 213.4 175 67.4
Os02g0605600 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 1.3e-52 211.1 178 65.2
COL.COLO4_08422 Corchorus olitorius HOM05D004200 ORTHO05D004996 2.9e-52 209.9 123 89.4
CBR_g36466 Chara braunii HOM05D004200 ORTHO05D004996 1.8e-46 190.7 175 59.4
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.6e-45 187.6 172 65.7
BcaB01g04937 Brassica carinata HOM05D004200 ORTHO05D004996 2.1e-34 150.6 94 79.8
SEGI_29242 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 2.1e-34 150.6 116 68.1
Ah.04g159100 Amaranthus hybridus HOM05D004200 ORTHO05D004996 3.4e-32 143.3 176 49.4
arahy.Tifrunner.gnm1.ann1.V65UZ0 Arachis hypogaea HOM05D004200 ORTHO05D004996 9.8e-32 141.7 111 68.5
Zm00001eb246650 Zea mays HOM05D004200 ORTHO05D004996 1.3e-31 141.4 127 63.8
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 7.8e-29 132.1 183 48.6
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 3.9e-28 129.8 202 46.0
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 6.6e-28 129.0 177 48.6
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 3.9e-20 103.2 168 43.5
arahy.Tifrunner.gnm1.ann1.D9AMXU Arachis hypogaea HOM05D004200 ORTHO05D004996 3.6e-18 96.7 55 85.5
SEGI_02846 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 7.6e-16 89.0 72 68.1
SEGI_21671 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 7.6e-16 89.0 72 68.1
MBI15_g33903_MAGBIO Magnolia biondii HOM05D000348 ORTHO05D000244 1.6e-10 71.2 44 84.1
SEGI_20593 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.1e-09 68.6 91 45.1
Mapoly0021s0077 Marchantia polymorpha HOM05D005321 ORTHO05D006360 1.9e-06 57.8 119 29.4


User provided reference genes

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