Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p048231 Quercus lobata HOM05D004200 ORTHO05D004996 1.6e-41 172.2 77 100.0
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 2.5e-23 111.7 74 79.7
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Psat3g102400 Pisum sativum HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 4.3e-23 110.9 74 78.4
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 7.4e-23 110.2 74 77.0
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 9.6e-23 109.8 74 77.0
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 9.6e-23 109.8 72 76.4
FAN14G5194 Fragaria x ananassa HOM05D004200 ORTHO05D004996 9.6e-23 109.8 72 76.4
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 9.6e-23 109.8 71 78.9
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
TAR362G0304 Trochodendron aralioides HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 1.3e-22 109.4 74 77.0
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.6e-22 109.0 74 77.0
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.6e-22 109.0 74 77.0
DCAR_030003 Daucus carota HOM05D004200 ORTHO05D004996 1.6e-22 109.0 74 75.7
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 1.6e-22 109.0 71 78.9
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 1.6e-22 109.0 74 75.7
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 1.6e-22 109.0 74 75.7
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 2.1e-22 108.6 74 75.7
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 2.1e-22 108.6 74 75.7
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 2.1e-22 108.6 74 75.7
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 2.1e-22 108.6 74 75.7
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 2.1e-22 108.6 74 75.7
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 2.8e-22 108.2 74 75.7
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 2.8e-22 108.2 74 75.7
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 2.8e-22 108.2 74 75.7
Lalb_Chr01g0020591 Lupinus albus HOM05D004200 ORTHO05D004996 2.8e-22 108.2 71 77.5
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 2.8e-22 108.2 74 75.7
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 3.7e-22 107.8 74 75.7
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 3.7e-22 107.8 74 75.7
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 3.7e-22 107.8 74 75.7
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 3.7e-22 107.8 74 75.7
Sabra13G0078600 Salix brachista HOM05D004200 ORTHO05D004996 3.7e-22 107.8 74 75.7
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 4.8e-22 107.5 74 74.3
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 6.3e-22 107.1 74 75.7
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 6.3e-22 107.1 74 75.7
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 6.3e-22 107.1 74 75.7
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 6.3e-22 107.1 74 75.7
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 6.3e-22 107.1 71 77.5
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 6.3e-22 107.1 74 75.7
VMungo0464G1072 Vigna mungo HOM05D004200 ORTHO05D004996 6.3e-22 107.1 50 98.0
Atru.chr12.1727 Acer truncatum HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 74.3
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 8.2e-22 106.7 49 100.0
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 8.2e-22 106.7 74 75.7
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 1.1e-21 106.3 74 74.3
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 1.1e-21 106.3 74 74.3
CARHR077380 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.1e-21 106.3 74 74.3
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 1.1e-21 106.3 74 74.3
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.1e-21 106.3 74 74.3
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
CARHR195770 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.4e-21 105.9 71 76.1
COL.COLO4_08422 Corchorus olitorius HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 75.7
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 1.4e-21 105.9 74 74.3
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 1.8e-21 105.5 74 74.3
EL10Ac4g10002 Beta vulgaris HOM05D004200 ORTHO05D004996 1.8e-21 105.5 74 74.3
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 1.8e-21 105.5 74 74.3
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 1.8e-21 105.5 74 74.3
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 1.8e-21 105.5 74 74.3
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 1.8e-21 105.5 74 74.3
Lj1A579T48 Lonicera japonica HOM05D004200 ORTHO05D004996 2.4e-21 105.1 49 98.0
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 2.4e-21 105.1 49 98.0
AL6G28510 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 3.1e-21 104.8 74 74.3
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 3.1e-21 104.8 74 73.0
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 3.1e-21 104.8 71 74.6
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 5.3e-21 104.0 74 74.3
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 5.3e-21 104.0 74 73.0
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 5.3e-21 104.0 57 86.0
AagrBONN_evm.TU.Sc2ySwM_368.146 Anthoceros agrestis HOM05D004200 ORTHO05D004996 6.9e-21 103.6 74 73.0
SEGI_05832 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 6.9e-21 103.6 71 73.2
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 9.0e-21 103.2 74 73.0
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 9.0e-21 103.2 74 71.6
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 9.0e-21 103.2 74 71.6
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 9.0e-21 103.2 74 71.6
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 1.2e-20 102.8 74 73.0
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 1.2e-20 102.8 74 71.6
Os02g0605600 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 1.5e-20 102.4 74 71.6
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.5e-20 102.4 74 71.6
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 2.0e-20 102.1 74 71.6
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 2.0e-20 102.1 71 73.2
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 2.0e-20 102.1 71 73.2
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 2.0e-20 102.1 71 73.2
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 2.6e-20 101.7 57 82.5
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 2.6e-20 101.7 71 71.8
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 3.4e-20 101.3 57 82.5
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 3.4e-20 101.3 71 70.4
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 3.4e-20 101.3 57 82.5
SGA_v2.0_scaffold340G49307 Striga asiatica HOM05D004200 ORTHO05D004996 4.5e-20 100.9 71 70.4
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 4.5e-20 100.9 74 70.3
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 7.6e-20 100.1 57 82.5
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 7.6e-20 100.1 71 69.0
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 7.6e-20 100.1 49 91.8
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 7.6e-20 100.1 71 70.4
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.0e-19 99.8 71 69.0
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.0e-19 99.8 71 70.4
MSTRG.8204 Avicennia marina HOM05D004200 ORTHO05D004996 1.7e-19 99.0 71 70.4
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 1.7e-19 99.0 74 68.9
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 1.7e-19 99.0 74 68.9
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 2.2e-19 98.6 73 68.5
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 2.2e-19 98.6 73 68.5
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 2.2e-19 98.6 73 68.5
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 2.9e-19 98.2 50 90.0
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 2.9e-19 98.2 57 80.7
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 2.9e-19 98.2 57 80.7
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 5.0e-19 97.4 74 68.9
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 5.0e-19 97.4 71 69.0
Pp3c16_8650 Physcomitrium patens HOM05D004200 ORTHO05D004996 6.5e-19 97.1 74 68.9
Pp3c25_5550 Physcomitrium patens HOM05D004200 ORTHO05D004996 6.5e-19 97.1 74 68.9
SEGI_29242 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 8.5e-19 96.7 71 67.6
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 3.2e-18 94.7 53 79.2
SEGI_38734 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 4.2e-18 94.4 50 82.0
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 5.5e-18 94.0 74 67.6
CBR_g36466 Chara braunii HOM05D004200 ORTHO05D004996 7.2e-18 93.6 79 60.8
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 1.6e-17 92.4 70 65.7
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 6.3e-14 80.5 45 84.4
C03p51090 Brassica napus HOM05D004200 ORTHO05D004996 2.4e-13 78.6 51 72.5
Mapoly0074s0043 Marchantia polymorpha HOM05D004200 ORTHO05D004996 5.0e-11 70.9 75 56.0
PRCOL_00002934 Prasinoderma coloniale HOM05D004200 ORTHO05D004996 3.7e-06 54.7 57 47.4


User provided reference genes

Program Settings