Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-73 279.3 145 100.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.3e-44 183.3 132 73.5
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 3.5e-42 175.3 132 68.9
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 7.3e-40 167.5 132 66.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.1e-38 163.7 133 63.9
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.1e-38 163.7 154 61.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.8e-38 162.9 133 63.2
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.0e-38 161.8 134 67.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 4.0e-38 161.8 154 61.7
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 4.0e-38 161.8 133 67.7
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 5.3e-38 161.4 154 61.0
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-37 160.2 133 67.7
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.0e-37 159.5 134 64.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.0e-37 159.5 134 64.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.0e-37 159.5 133 64.7
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.6e-37 159.1 135 63.7
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 3.4e-37 158.7 133 66.9
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.5e-37 158.3 114 75.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.8e-37 157.9 134 64.2
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 5.8e-37 157.9 133 63.2
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 9.9e-37 157.1 133 62.4
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 2.9e-36 155.6 135 65.9
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.9e-36 155.6 132 62.9
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.8e-36 155.2 134 62.7
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 3.8e-36 155.2 132 63.6
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.9e-36 154.8 132 62.1
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 8.4e-36 154.1 133 63.9
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.1e-35 153.7 90 87.8
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.4e-35 153.3 131 62.6
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.4e-35 153.3 134 62.7
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.4e-35 153.3 132 65.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 3.2e-35 152.1 115 70.4
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 5.4e-35 151.4 133 60.9
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 5.4e-35 151.4 133 60.9
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.1e-34 149.4 114 71.1
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 2.7e-34 149.1 133 59.4
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 3.5e-34 148.7 132 59.8
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 6.0e-34 147.9 132 61.4
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.3e-33 146.7 132 61.4
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.8e-33 146.4 132 59.1
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 6.7e-33 144.4 133 58.6
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.1e-32 143.7 132 59.1
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.5e-32 143.3 109 67.0
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.5e-32 142.5 132 56.8
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 2.5e-32 142.5 133 57.1
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.5e-32 142.5 114 68.4
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.3e-31 140.2 133 57.1
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-31 140.2 110 63.6
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.8e-31 139.0 133 54.1
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 8.1e-31 137.5 135 58.5
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.8e-30 136.3 123 61.8
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.0e-30 135.2 139 54.0
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 5.3e-30 134.8 142 54.2
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.9e-30 134.4 133 57.1
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.0e-30 134.0 132 58.3
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 1.2e-29 133.7 99 66.7
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.6e-29 131.0 110 62.7
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 7.6e-29 131.0 92 79.3
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 9.9e-29 130.6 119 59.7
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.3e-28 130.2 100 71.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.2e-28 129.4 110 60.9
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.8e-28 128.6 110 58.2
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.4e-27 125.9 139 54.7
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-27 125.6 135 55.6
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 7.1e-27 124.4 119 57.1
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.7e-26 122.5 135 50.4
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 4.6e-26 121.7 132 51.5
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.0e-25 120.6 110 55.5
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.3e-25 120.2 136 50.7
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.0e-25 119.0 143 47.6
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.9e-25 118.6 133 50.4
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 8.7e-25 117.5 133 51.1
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.9e-24 116.3 117 52.1
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.3e-24 115.2 115 53.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 7.4e-24 114.4 134 51.5
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 7.4e-24 114.4 95 63.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 7.4e-24 114.4 114 56.1
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.1e-23 112.8 118 50.8
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 8.2e-23 110.9 95 62.1
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.4e-22 109.4 120 49.2
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.4e-22 109.4 110 51.8
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 4.0e-22 108.6 127 52.0
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 9.0e-22 107.5 119 52.1
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.2e-21 107.1 94 55.3
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.5e-21 106.7 147 44.2
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 2.0e-21 106.3 132 48.5
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 4.5e-21 105.1 124 49.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 5.8e-21 104.8 124 49.2
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.0e-20 104.0 133 48.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.0e-20 104.0 142 45.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.3e-20 103.6 114 49.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.3e-20 103.6 142 44.4
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.2e-20 102.8 135 46.7
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-19 100.5 115 47.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.4e-19 100.1 149 40.9
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 4.2e-19 98.6 121 44.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 4.6e-18 95.1 98 50.0
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 4.6e-18 95.1 120 47.5
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 3.0e-17 92.4 104 48.1
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 3.9e-17 92.0 117 49.6
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 6.7e-17 91.3 108 47.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 6.7e-17 91.3 118 48.3
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.7e-17 91.3 137 40.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 8.7e-17 90.9 116 47.4
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.1e-16 90.5 121 44.6
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.9e-16 89.7 108 46.3
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 3.3e-16 89.0 109 46.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 4.3e-16 88.6 126 45.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 4.3e-16 88.6 101 48.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 5.7e-16 88.2 122 43.4
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 5.7e-16 88.2 121 43.8
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 5.7e-16 88.2 122 43.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 7.4e-16 87.8 117 44.4
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 7.4e-16 87.8 95 48.4
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.6e-15 86.7 113 41.6
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 8.2e-15 84.3 119 45.4
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.1e-14 84.0 118 39.8
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-14 82.8 102 44.1
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.4e-14 82.8 114 43.0
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 3.1e-14 82.4 117 38.5
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.2e-13 80.5 118 42.4
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.2e-13 80.5 101 46.5
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.4e-13 79.0 133 39.1
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 5.9e-13 78.2 114 40.4
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.1e-11 73.9 57 59.6
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.1e-11 73.9 129 34.9
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.6e-10 68.9 122 34.4
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.6e-10 68.9 53 75.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 6.7e-09 64.7 108 38.9
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-08 63.9 102 39.2
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.3e-08 62.4 72 44.4
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-07 60.5 108 31.5
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.7e-07 60.1 72 41.7
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 6.3e-07 58.2 109 37.6
TPR.G16077 Trifolium pratense HOM05D000200 ORTHO05D000262 6.3e-07 58.2 52 53.8
arahy.Tifrunner.gnm1.ann1.385P84 Arachis hypogaea HOM05D000055 ORTHO05D001675 5.3e-06 55.1 41 65.9
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 6.9e-06 54.7 83 41.0


User provided reference genes

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