Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 0.0e+00 1708.3 881 100.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 0.0e+00 1278.8 854 79.9
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 0.0e+00 1172.9 779 79.7
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 0.0e+00 1128.2 859 71.2
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 0.0e+00 1076.6 864 67.1
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 6.0e-310 1067.4 870 68.0
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 8.6e-309 1063.5 854 68.0
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.6e-302 1042.7 859 66.9
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.1e-300 1036.6 863 66.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.1e-300 1036.6 858 67.2
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.5e-300 1035.4 865 65.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 9.5e-300 1033.5 867 65.7
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.5e-297 1026.2 866 63.9
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 6.4e-296 1020.8 865 64.5
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.4e-295 1017.7 858 65.3
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 1.7e-293 1012.7 866 63.7
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 3.0e-293 1011.9 864 64.5
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.9e-290 1000.3 862 64.8
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.2e-289 1000.0 863 64.4
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.6e-289 998.8 861 64.8
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 7.6e-289 997.3 906 62.4
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.1e-287 993.4 907 61.9
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.4e-287 991.1 907 61.9
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.3e-285 986.5 862 63.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.7e-285 986.1 907 61.5
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.5e-284 982.2 862 63.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 7.3e-284 980.7 932 60.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.6e-283 979.5 866 62.6
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 2.4e-282 975.7 862 62.5
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.2e-281 973.4 930 60.3
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.9e-280 968.0 862 62.5
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 8.4e-280 967.2 859 62.7
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 9.3e-279 963.8 862 63.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.1e-278 962.6 861 62.7
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 4.8e-275 951.4 865 62.4
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 3.1e-274 948.7 830 64.0
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.0e-274 948.3 858 62.6
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 3.4e-265 918.7 873 60.5
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.6e-265 917.5 859 60.3
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.7e-264 916.4 873 60.4
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.1e-263 911.0 863 59.7
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.9e-260 902.9 859 59.1
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 7.4e-260 901.0 814 62.3
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.0e-256 890.6 762 65.9
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 9.3e-255 884.0 900 56.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 8.7e-253 877.5 869 57.8
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 5.7e-252 874.8 873 57.5
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.7e-249 864.4 860 57.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.4e-247 860.1 860 57.7
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.1e-246 854.7 847 57.7
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.8e-245 853.2 867 57.9
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.8e-245 853.2 853 58.3
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.2e-243 846.3 991 53.0
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 2.4e-242 842.8 762 63.1
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 3.3e-236 822.4 806 59.6
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 6.3e-235 818.1 920 54.1
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.5e-233 813.5 899 53.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 2.9e-232 809.3 860 54.8
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.8e-229 800.0 850 56.1
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 3.7e-227 792.3 903 52.9
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.4e-226 790.4 860 54.2
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.5e-223 779.6 867 53.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.5e-220 770.4 900 52.6
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.0e-220 770.0 858 53.7
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.6e-220 769.6 858 53.6
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 5.7e-220 768.5 878 52.1
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.2e-219 766.5 857 53.7
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.8e-219 766.1 858 54.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 8.3e-219 764.6 871 54.2
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 7.7e-217 758.1 909 50.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 3.8e-216 755.7 857 52.5
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.4e-212 742.7 859 53.2
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 7.5e-212 741.5 672 62.6
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 4.9e-203 712.2 465 81.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 7.8e-201 704.9 864 50.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.3e-199 699.5 706 57.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 9.5e-199 698.0 862 48.8
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.0e-197 694.5 881 48.0
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.9e-192 676.0 874 48.1
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 2.3e-189 666.8 853 50.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 6.4e-187 658.7 862 46.8
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.2e-186 656.4 954 42.7
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 9.5e-183 644.8 859 45.8
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.9e-179 633.3 605 59.5
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 4.6e-177 625.9 930 44.3
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.7e-176 624.0 871 43.9
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 6.6e-176 622.1 865 46.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.4e-173 614.4 921 43.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 3.8e-171 606.3 915 43.3
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 8.4e-171 605.1 862 45.1
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.2e-170 602.8 872 44.6
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.8e-169 598.6 895 43.7
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 7.8e-169 598.6 442 71.5
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.3e-168 597.8 866 46.2
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.6e-166 590.9 862 45.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.0e-164 583.9 850 43.5
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.8e-163 579.7 488 65.0
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 4.9e-163 579.3 945 42.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.4e-162 577.0 861 43.7
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 9.3e-162 575.1 521 61.6
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 3.5e-161 573.2 865 43.8
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.0e-161 572.4 867 44.3
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 2.3e-160 570.5 871 43.1
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 5.1e-160 569.3 862 43.5
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 5.1e-160 569.3 871 43.1
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 6.6e-160 568.9 871 43.1
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.1e-159 568.2 871 43.1
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 1.2e-156 558.1 535 59.1
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 4.5e-156 556.2 859 43.7
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.0e-152 545.0 853 42.6
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.1e-151 541.6 499 60.3
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.1e-150 537.3 657 51.1
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 9.6e-143 511.9 860 40.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.7e-139 501.1 701 47.4
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.4e-133 480.7 855 38.7
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 5.9e-124 449.5 476 56.1
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.6e-119 434.1 690 43.2
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.4e-117 428.3 684 42.7
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 7.7e-116 422.5 941 34.6
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 2.2e-115 421.0 697 40.6
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 3.7e-110 403.7 340 66.2
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.2e-106 390.6 915 32.3
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 9.4e-106 389.0 700 38.6
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 6.1e-105 386.3 637 41.6
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.0e-104 385.6 917 32.5
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 4.0e-104 383.6 721 37.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 8.8e-104 382.5 470 47.9
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.5e-103 381.7 440 49.8
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 5.7e-103 379.8 722 38.1
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.4e-101 374.4 282 72.7
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 7.5e-95 352.8 464 45.0
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-91 342.0 253 71.1
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.8e-91 340.5 286 62.6
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.6e-89 334.0 269 68.0
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 3.0e-88 330.9 312 60.3
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.6e-84 318.5 655 38.0
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 5.0e-83 313.5 372 49.7
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.6e-83 313.2 975 28.6
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.9e-82 311.6 370 49.5
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 9.5e-82 309.3 421 46.3
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.5e-79 302.0 688 33.4
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.5e-74 285.4 931 29.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 7.5e-71 273.1 238 63.9
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.6e-63 248.1 294 55.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.4e-62 243.4 344 44.5
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 4.9e-54 217.2 379 40.4
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.2e-53 214.5 193 62.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.9e-51 207.6 233 54.5
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.6e-47 194.9 329 41.9
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.9e-47 193.0 218 56.4
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.6e-44 184.1 177 57.1
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.9e-42 178.7 147 59.9
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 8.1e-41 173.3 223 52.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-38 165.6 448 34.6
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.4e-37 161.8 152 61.2
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-34 151.8 101 82.2
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 3.7e-33 147.9 175 48.6
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.6e-28 132.5 195 44.6
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.6e-28 131.0 281 35.9
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.0e-27 129.8 156 44.2
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 6.7e-27 127.1 151 51.7
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 2.9e-22 111.7 83 71.1
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.0e-22 110.9 117 55.6
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 8.5e-22 110.2 192 36.5
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.1e-21 109.8 93 60.2
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.6e-17 95.9 161 39.1
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.7e-14 85.9 179 35.2
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.6e-12 79.3 58 62.1
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.7e-12 78.6 70 64.3
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 6.1e-12 77.4 145 37.2
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 1.0e-11 76.6 128 38.3
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.4e-11 76.3 91 41.8
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.3e-11 75.5 127 37.8
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.6e-10 72.0 79 46.8
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.4e-08 66.2 70 48.6
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 1.4e-08 66.2 71 57.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.4e-08 66.2 81 46.9
MELO3C029664.2 Cucumis melo HOM05D003625 ORTHO05D004382 5.3e-08 64.3 49 67.3
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 5.9e-07 60.8 89 41.6
MELO3C027354.2 Cucumis melo HOM05D011664 ORTHO05D015088 3.8e-06 58.2 74 44.6
MELO3C027569.2 Cucumis melo HOM05D011664 ORTHO05D015088 3.8e-06 58.2 59 52.5
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 6.5e-06 57.4 94 36.2
MELO3C027896.2 Cucumis melo HOM05D011664 ORTHO05D015088 8.5e-06 57.0 72 47.2


User provided reference genes

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