Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 9.4e-179 630.2 340 100.0
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 9.7e-59 231.5 347 44.7
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 4.1e-49 199.5 359 40.7
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.2e-42 177.2 274 42.0
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.3e-39 167.9 245 42.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 9.1e-33 145.2 341 33.1
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 4.5e-32 142.9 344 32.8
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 5.0e-31 139.4 330 33.6
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 8.6e-31 138.7 346 34.4
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 3.3e-30 136.7 339 32.7
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.3e-30 136.7 327 32.7
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.6e-29 134.4 341 32.3
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.8e-29 133.7 327 32.1
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.8e-29 133.7 327 32.4
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 4.7e-29 132.9 328 34.1
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 8.0e-29 132.1 312 31.7
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 8.0e-29 132.1 227 37.0
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 4.0e-28 129.8 337 32.0
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.0e-28 129.8 226 36.3
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 4.0e-28 129.8 228 37.3
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.0e-28 129.8 251 37.8
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 5.2e-28 129.4 343 32.7
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.2e-28 129.4 326 31.9
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.8e-28 129.0 226 36.3
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.8e-28 129.0 226 36.3
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-27 127.9 226 35.8
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.0e-27 127.5 330 31.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.0e-27 127.5 250 34.4
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.6e-27 127.1 362 30.7
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.4e-27 126.7 330 31.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 5.7e-27 125.9 323 31.0
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.7e-26 124.4 339 31.3
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.9e-26 123.6 318 31.8
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 6.4e-26 122.5 323 31.9
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.1e-25 121.7 337 30.6
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 1.1e-25 121.7 270 36.3
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 4.6e-24 116.3 342 30.1
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 7.8e-24 115.5 115 52.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.0e-23 115.2 334 28.4
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.7e-23 114.4 330 27.9
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 3.0e-23 113.6 258 32.9
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 3.0e-23 113.6 372 32.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 8.6e-23 112.1 223 35.4
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 4.3e-22 109.8 346 27.7
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.3e-22 109.8 322 28.6
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 7.3e-22 109.0 106 52.8
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.1e-21 107.5 383 27.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.6e-21 106.7 261 30.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.6e-21 106.7 227 30.8
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 4.7e-21 106.3 230 30.9
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 1.4e-20 104.8 314 29.0
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.3e-20 104.0 337 28.5
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.1e-20 103.6 313 30.4
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 4.0e-20 103.2 116 48.3
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 4.0e-20 103.2 116 48.3
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 6.8e-20 102.4 323 28.8
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 8.9e-20 102.1 246 30.5
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.2e-19 101.7 332 28.6
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 4.4e-19 99.8 243 28.8
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 5.8e-19 99.4 311 27.3
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 7.5e-19 99.0 119 43.7
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 9.8e-19 98.6 241 27.4
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.9e-18 97.1 312 27.9
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 3.7e-18 96.7 125 41.6
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 4.9e-18 96.3 244 28.7
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 4.9e-18 96.3 244 28.7
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 4.9e-18 96.3 244 28.7
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 8.3e-18 95.5 316 25.0
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.1e-17 95.1 336 28.0
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.4e-17 94.7 240 27.1
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.9e-17 94.4 124 40.3
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.4e-17 94.0 244 28.7
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 2.4e-17 94.0 339 28.3
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 3.2e-17 93.6 346 26.6
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 3.2e-17 93.6 346 26.6
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 4.1e-17 93.2 317 25.9
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 5.4e-17 92.8 310 26.1
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 9.2e-17 92.0 246 27.2
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.2e-16 91.7 312 25.3
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.6e-16 91.3 228 29.4
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 2.0e-16 90.9 241 26.6
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.7e-16 90.5 245 26.9
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 2.7e-16 90.5 241 32.0
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.5e-16 90.1 315 25.7
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 4.6e-16 89.7 134 39.6
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 6.0e-16 89.4 242 27.7
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 6.0e-16 89.4 339 28.3
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 6.0e-16 89.4 343 27.4
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 1.0e-15 88.6 311 26.4
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-15 88.2 242 28.1
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.7e-15 87.8 116 44.0
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.7e-15 87.8 125 37.6
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.3e-15 87.4 113 38.1
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 3.0e-15 87.0 245 26.5
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 3.9e-15 86.7 106 49.1
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 6.6e-15 85.9 235 26.4
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.9e-14 84.3 235 28.5
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 2.5e-14 84.0 109 41.3
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 3.3e-14 83.6 202 30.2
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 4.3e-14 83.2 323 26.9
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.3e-14 83.2 255 26.3
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 7.3e-14 82.4 323 25.1
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.6e-13 81.3 125 36.8
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.6e-13 81.3 125 36.8
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.6e-13 81.3 125 36.8
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.6e-13 81.3 229 26.6
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 2.8e-13 80.5 125 36.8
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 6.2e-13 79.3 272 26.5
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 6.2e-13 79.3 107 39.3
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 1.1e-12 78.6 113 43.4
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 4.0e-12 76.6 123 35.0
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 4.0e-12 76.6 105 41.0
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 2.2e-10 70.9 104 41.3
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.7e-10 70.1 112 40.2
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 3.7e-10 70.1 116 32.8
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 6.4e-10 69.3 337 24.9
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 8.3e-10 68.9 119 36.1
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.4e-09 68.2 227 25.6
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 1.4e-09 68.2 107 43.0
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-09 67.8 112 33.9
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-09 67.8 112 33.9
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.1e-09 66.6 109 36.7
CAN.G1733.3 Capsicum annuum HOM05D004190 ORTHO05D004692 9.2e-09 65.5 100 40.0
Lj1P258T42 Lonicera japonica HOM05D004190 ORTHO05D004692 1.2e-08 65.1 139 37.4
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 2.7e-08 63.9 103 40.8
Actinidia24234 Actinidia chinensis HOM05D004190 ORTHO05D004692 6.0e-08 62.8 157 33.1
PGSC0003DMG400026343 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.0e-07 60.5 75 38.7
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.0e-07 60.5 70 37.1
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 8.6e-07 58.9 116 39.7
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.5e-06 57.4 65 44.6
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 4.3e-06 56.6 112 35.7
CSS0027943 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 7.3e-06 55.8 169 31.4
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 7.3e-06 55.8 262 26.7


User provided reference genes

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