Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p011562 Quercus lobata HOM05D003034 ORTHO05D029951 3.3e-139 498.4 260 100.0
QL06p036908 Quercus lobata HOM05D003034 ORTHO05D003815 2.7e-69 266.2 164 84.1
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 9.5e-30 134.8 78 87.2
PGR102G1252 Punica granatum HOM05D003034 ORTHO05D003815 4.0e-28 129.4 232 39.7
Potri.006G163700 Populus trichocarpa HOM05D003034 ORTHO05D003815 6.8e-28 128.6 237 44.3
ClCG11G011740 Citrullus lanatus HOM05D003034 ORTHO05D003815 8.9e-28 128.3 228 40.4
Eucgr.C03783 Eucalyptus grandis HOM05D003034 ORTHO05D003815 1.2e-27 127.9 233 41.6
QL07p045689 Quercus lobata HOM05D003034 ORTHO05D003815 2.0e-27 127.1 233 42.9
CANSAT56G3645 Cannabis sativa HOM05D003034 ORTHO05D003815 2.6e-27 126.7 232 38.4
MBI01_g18395_MAGBIO Magnolia biondii HOM05D003034 ORTHO05D003815 3.4e-27 126.3 230 39.1
MELO3C004580.2 Cucumis melo HOM05D003034 ORTHO05D003815 4.4e-27 125.9 228 39.9
Cfa003200 Carpinus fangiana HOM05D003034 ORTHO05D003815 5.7e-27 125.6 232 39.7
Sabra18G0074400 Salix brachista HOM05D003034 ORTHO05D003815 7.5e-27 125.2 241 39.0
Cpa.g.sc80.4 Carica papaya HOM05D003034 ORTHO05D003815 9.8e-27 124.8 231 38.5
Haze_25807 Corylus avellana HOM05D003034 ORTHO05D003815 9.8e-27 124.8 232 38.8
CSS0003359 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 1.3e-26 124.4 225 40.9
CSS0030998 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 1.3e-26 124.4 225 40.9
Potri.018G086100 Populus trichocarpa HOM05D003034 ORTHO05D003815 1.3e-26 124.4 240 40.8
Duzib187G0042 Durio zibethinus HOM05D003034 ORTHO05D003815 1.7e-26 124.0 233 39.5
Lj3g0026495 Lotus japonicus HOM05D003034 ORTHO05D003815 1.7e-26 124.0 234 37.2
Nn6g34053 Nelumbo nucifera HOM05D003034 ORTHO05D003815 1.7e-26 124.0 228 39.0
CsaV3_2G002010 Cucumis sativus L. HOM05D003034 ORTHO05D003815 2.2e-26 123.6 228 39.0
Nn2g11616 Nelumbo nucifera HOM05D003034 ORTHO05D003815 2.8e-26 123.2 228 39.0
Lalb_Chr14g0371801 Lupinus albus HOM05D003034 ORTHO05D003815 3.7e-26 122.9 234 36.8
GSVIVG01015321001 Vitis vinifera HOM05D003034 ORTHO05D003815 3.7e-26 122.9 230 38.3
Duzib150G0860 Durio zibethinus HOM05D003034 ORTHO05D003815 4.9e-26 122.5 234 37.6
FvH4_1g05870 Fragaria vesca HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
FAN19G3151 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
FAN23G2752 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
FAN26G1867 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
FAN26G3466 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
FAN28G1237 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
RcHm_v2.0_Chr2g0091531 Rosa chinensis HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
RcHm_v2.0_Chr2g0091611 Rosa chinensis HOM05D003034 ORTHO05D003815 4.9e-26 122.5 237 37.6
Sed0020635 Sechium edule HOM05D003034 ORTHO05D003815 4.9e-26 122.5 228 38.2
TAR383G0759 Trochodendron aralioides HOM05D003034 ORTHO05D003815 4.9e-26 122.5 227 40.5
Lalb_Chr14g0364221 Lupinus albus HOM05D003034 ORTHO05D003815 6.3e-26 122.1 234 36.8
Prupe.6G190500 Prunus persica HOM05D003034 ORTHO05D003815 6.3e-26 122.1 234 42.3
MELO3C003973.2 Cucumis melo HOM05D003034 ORTHO05D003815 1.1e-25 121.3 228 38.6
Manes.16G110600 Manihot esculenta HOM05D003034 ORTHO05D003815 1.1e-25 121.3 233 40.8
Thecc.09G102800 Theobroma cacao HOM05D003034 ORTHO05D003815 1.1e-25 121.3 237 39.7
VMungo0464G1299 Vigna mungo HOM05D003034 ORTHO05D003815 1.1e-25 121.3 237 36.3
A07p42740 Brassica napus HOM05D003034 ORTHO05D003815 1.4e-25 120.9 237 38.8
C06p51340 Brassica napus HOM05D003034 ORTHO05D003815 1.4e-25 120.9 237 38.8
BraA07t31796Z Brassica rapa HOM05D003034 ORTHO05D003815 1.4e-25 120.9 237 38.8
BcaC08g47218 Brassica carinata HOM05D003034 ORTHO05D003815 1.8e-25 120.6 237 38.8
BcaNung04773 Brassica carinata HOM05D003034 ORTHO05D003815 1.8e-25 120.6 237 38.8
Phvul.004G176500 Phaseolus vulgaris HOM05D003034 ORTHO05D003815 1.8e-25 120.6 238 36.6
Ca_00851_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 2.4e-25 120.2 233 36.9
Manes.03G025400 Manihot esculenta HOM05D003034 ORTHO05D003815 2.4e-25 120.2 233 41.6
BolC6t40155H Brassica oleracea HOM05D003034 ORTHO05D003815 3.1e-25 119.8 237 38.8
Lj3g0024359 Lotus japonicus HOM05D003034 ORTHO05D003815 3.1e-25 119.8 237 36.7
HPP92_020241 Vanilla planifolia HOM05D003034 ORTHO05D003815 3.1e-25 119.8 230 38.3
TWI63G1404 Tripterygium wilfordii HOM05D003034 ORTHO05D003815 4.1e-25 119.4 230 38.7
Medtr2g030450 Medicago truncatula HOM05D003034 ORTHO05D003815 5.4e-25 119.0 235 36.6
Psat6g027040 Pisum sativum HOM05D003034 ORTHO05D003815 5.4e-25 119.0 237 35.9
Aa31LG4G7190 Aethionema arabicum HOM05D003034 ORTHO05D003815 9.2e-25 118.2 235 36.6
Glyma.16G077700 Glycine max HOM05D003034 ORTHO05D003815 9.2e-25 118.2 237 35.9
Nitab4.5_0001886g0070 Nicotiana tabacum HOM05D003034 ORTHO05D003815 9.2e-25 118.2 232 37.9
Peaxi162Scf00463g00215 Petunia axillaris HOM05D003034 ORTHO05D003815 9.2e-25 118.2 99 67.7
CARHR070650 Cardamine hirsuta HOM05D003034 ORTHO05D003815 1.2e-24 117.9 236 36.4
CDE02G1105 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 1.2e-24 117.9 231 36.4
CDE04G2309 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 1.2e-24 117.9 231 36.8
Ca_11222_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 1.2e-24 117.9 234 39.7
Glyma.01G008600 Glycine max HOM05D003034 ORTHO05D003815 1.2e-24 117.9 238 37.0
SGA_v2.0_scaffold2G00918 Striga asiatica HOM05D003034 ORTHO05D003815 1.2e-24 117.9 99 67.7
CAN.G1349.3 Capsicum annuum HOM05D003034 ORTHO05D003815 1.6e-24 117.5 234 37.6
CAN.G2308.2 Capsicum annuum HOM05D003034 ORTHO05D003815 1.6e-24 117.5 234 37.6
Nitab4.5_0000571g0140 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.6e-24 117.5 99 66.7
Nitab4.5_0001364g0040 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.6e-24 117.5 99 66.7
SHI17238 Sapria himalayana HOM05D003034 ORTHO05D003815 1.6e-24 117.5 231 37.2
Sp5g32360 Schrenkiella parvula HOM05D003034 ORTHO05D003815 1.6e-24 117.5 232 38.4
Actinidia32658 Actinidia chinensis HOM05D003034 ORTHO05D003815 2.0e-24 117.1 99 66.7
Lsat_1_v5_gn_8_96740 Lactuca sativa HOM05D003034 ORTHO05D003815 2.0e-24 117.1 99 66.7
MD15G1194300 Malus domestica HOM05D003034 ORTHO05D003815 2.0e-24 117.1 235 41.3
MSTRG.27345 Avicennia marina HOM05D003034 ORTHO05D003815 2.7e-24 116.7 99 66.7
Os02g0759800 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 2.7e-24 116.7 240 36.2
Ciclev10011323m.g Citrus clementina HOM05D003034 ORTHO05D003815 3.5e-24 116.3 232 36.2
THA.LOC104814568 Tarenaya hassleriana HOM05D003034 ORTHO05D003815 3.5e-24 116.3 122 56.6
Hma1.2p1_0155F.1_g068240 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 4.5e-24 115.9 99 66.7
MD02G1060800 Malus domestica HOM05D003034 ORTHO05D003815 4.5e-24 115.9 234 41.9
Oeu013765.3 Olea europaea HOM05D003034 ORTHO05D003815 4.5e-24 115.9 99 66.7
CsaV3_2G008750 Cucumis sativus L. HOM05D003034 ORTHO05D003815 5.9e-24 115.5 228 38.6
Atru.chr7.1439 Acer truncatum HOM05D003034 ORTHO05D003815 1.0e-23 114.8 235 39.6
Carub.0002s2406 Capsella rubella HOM05D003034 ORTHO05D003815 1.3e-23 114.4 232 37.5
Dinv36700 Davidia involucrata HOM05D003034 ORTHO05D003815 1.3e-23 114.4 99 65.7
TAR626G0953 Trochodendron aralioides HOM05D003034 ORTHO05D003815 1.3e-23 114.4 99 65.7
unitig_748.g6993 Utricularia gibba HOM05D003034 ORTHO05D003815 1.3e-23 114.4 99 64.6
Thhalv10018295m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 1.7e-23 114.0 232 37.5
Nitab4.5_0001004g0210 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.7e-23 114.0 99 64.6
Sopen12g003330 Solanum pennellii HOM05D003034 ORTHO05D003815 1.7e-23 114.0 99 64.6
PGSC0003DMG400000364 Solanum tuberosum HOM05D003034 ORTHO05D003815 1.7e-23 114.0 99 64.6
Zm00001eb193840 Zea mays HOM05D003034 ORTHO05D003815 1.7e-23 114.0 99 64.6
CiPaw.05G159100 Carya illinoinensis HOM05D003034 ORTHO05D003815 2.3e-23 113.6 231 39.0
ECA247G1716 Erigeron canadensis HOM05D003034 ORTHO05D003815 2.3e-23 113.6 99 63.6
Lsat_1_v5_gn_8_96801 Lactuca sativa HOM05D003034 ORTHO05D003815 2.3e-23 113.6 99 64.6
Cc06_g10290 Coffea canephora HOM05D003034 ORTHO05D003815 2.9e-23 113.2 99 64.6
Gohir.D06G064900 Gossypium hirsutum HOM05D003034 ORTHO05D003815 2.9e-23 113.2 235 40.9
Gorai.010G076000 Gossypium raimondii HOM05D003034 ORTHO05D003815 2.9e-23 113.2 235 40.9
SEGI_22940 Sequoiadendron giganteum HOM05D003034 ORTHO05D003815 2.9e-23 113.2 225 38.7
ECA234G3488 Erigeron canadensis HOM05D003034 ORTHO05D003815 3.8e-23 112.8 99 63.6
arahy.Tifrunner.gnm1.ann1.FQ27XI Arachis hypogaea HOM05D003034 ORTHO05D003815 6.6e-23 112.1 99 62.6
arahy.Tifrunner.gnm1.ann1.H9HV5G Arachis hypogaea HOM05D003034 ORTHO05D003815 6.6e-23 112.1 99 62.6
arahy.Tifrunner.gnm1.ann1.Q11F98 Arachis hypogaea HOM05D003034 ORTHO05D003815 6.6e-23 112.1 99 62.6
arahy.Tifrunner.gnm1.ann1.SJ5F17 Arachis hypogaea HOM05D003034 ORTHO05D003815 6.6e-23 112.1 99 62.6
SalBow6G1785 Salvia bowleyana HOM05D003034 ORTHO05D003815 6.6e-23 112.1 99 63.6
CiPaw.03G226500 Carya illinoinensis HOM05D003034 ORTHO05D003815 8.6e-23 111.7 232 36.2
Migut.F00702 Erythranthe guttata HOM05D003034 ORTHO05D003815 8.6e-23 111.7 99 63.6
Lj7P662T23 Lonicera japonica HOM05D003034 ORTHO05D003815 8.6e-23 111.7 99 63.6
Gohir.A06G066400 Gossypium hirsutum HOM05D003034 ORTHO05D003815 1.1e-22 111.3 235 40.9
HanXRQChr12g0355101 Helianthus annuus HOM05D003034 ORTHO05D003815 1.1e-22 111.3 99 63.6
ATR0705G182 Amborella trichopoda HOM05D003034 ORTHO05D003815 3.3e-22 109.8 225 40.0
AL2G37350 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 3.3e-22 109.8 99 63.6
Sc18g0001400 Simmondsia chinensis HOM05D003034 ORTHO05D003815 3.3e-22 109.8 230 35.7
PSO675G1466 Papaver somniferum HOM05D003034 ORTHO05D003815 4.3e-22 109.4 231 35.9
ClCG11G002250 Citrullus lanatus HOM05D003034 ORTHO05D003815 5.6e-22 109.0 228 36.0
AT1G77180 Arabidopsis thaliana HOM05D003034 ORTHO05D003815 7.3e-22 108.6 99 62.6
Atru.chr3.2837 Acer truncatum HOM05D003034 ORTHO05D003815 9.5e-22 108.2 99 61.6
COL.COLO4_34776 Corchorus olitorius HOM05D003034 ORTHO05D003815 9.5e-22 108.2 99 62.6
PSO541G1919 Papaver somniferum HOM05D003034 ORTHO05D003815 9.5e-22 108.2 231 35.9
Aqoxy5G03604 Aquilegia oxysepala HOM05D003034 ORTHO05D003815 1.6e-21 107.5 99 61.6
CANSAT56G0252 Cannabis sativa HOM05D003034 ORTHO05D003815 2.8e-21 106.7 100 62.0
MD02G1060700 Malus domestica HOM05D003034 ORTHO05D003815 2.8e-21 106.7 240 35.8
ATR0767G058 Amborella trichopoda HOM05D003034 ORTHO05D003815 4.7e-21 105.9 226 39.8
DCAR_028668 Daucus carota HOM05D003034 ORTHO05D003815 1.0e-20 104.8 98 61.2
Peaxi162Scf00665g00023 Petunia axillaris HOM05D003034 ORTHO05D003815 1.0e-20 104.8 99 57.6
Prupe.7G222200 Prunus persica HOM05D003034 ORTHO05D003815 3.0e-20 103.2 99 60.6
EL10Ac8g18404 Beta vulgaris HOM05D003034 ORTHO05D003815 5.2e-20 102.4 92 63.0
Mapoly0133s0002 Marchantia polymorpha HOM05D003034 ORTHO05D003815 5.2e-20 102.4 99 58.6
AagrBONN_evm.TU.Sc2ySwM_344.799 Anthoceros agrestis HOM05D003034 ORTHO05D003815 6.8e-20 102.1 97 60.8
AUR62010919 Chenopodium quinoa HOM05D003034 ORTHO05D003815 6.8e-20 102.1 92 63.0
AUR62039009 Chenopodium quinoa HOM05D003034 ORTHO05D003815 6.8e-20 102.1 92 63.0
AUR62021432 Chenopodium quinoa HOM05D003034 ORTHO05D003815 8.9e-20 101.7 99 58.6
Ah.13g075360 Amaranthus hybridus HOM05D003034 ORTHO05D003815 1.5e-19 100.9 91 62.6
Carub.0006s0828 Capsella rubella HOM05D003034 ORTHO05D003815 2.6e-19 100.1 98 58.2
CBR_g39572 Chara braunii HOM05D003034 ORTHO05D000048 4.4e-19 99.4 99 55.6
Thhalv10009601m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 4.4e-19 99.4 94 60.6
AUR62029022 Chenopodium quinoa HOM05D003034 ORTHO05D003815 5.8e-19 99.0 91 61.5
Pp3c12_6510 Physcomitrium patens HOM05D003034 ORTHO05D003815 7.5e-19 98.6 98 57.1
Solyc12g008370.3 Solanum lycopersicum HOM05D003034 ORTHO05D003815 7.5e-19 98.6 65 78.5
Peaxi162Scf00038g01448 Petunia axillaris HOM05D003034 ORTHO05D306433 9.8e-19 98.2 92 62.0
RcHm_v2.0_Chr4g0445081 Rosa chinensis HOM05D003034 ORTHO05D003815 9.8e-19 98.2 186 39.8
ECA234G3735 Erigeron canadensis HOM05D003034 ORTHO05D003815 1.7e-18 97.4 93 60.2
Rhsim03G0075400 Rhododendron simsii HOM05D003034 ORTHO05D003815 4.9e-18 95.9 89 61.8
Hma1.2p1_1809F.1_g303480 Hydrangea macrophylla HOM05D003034 ORTHO05D029951 8.3e-18 95.1 155 43.2
TPR.G14199 Trifolium pratense HOM05D003034 ORTHO05D003815 8.3e-18 95.1 157 38.2
C02p34310 Brassica napus HOM05D003034 ORTHO05D003815 1.8e-17 94.0 213 35.2
PSO333G0016 Papaver somniferum HOM05D003034 ORTHO05D003815 3.2e-17 93.2 236 30.5
Nitab4.5_0004962g0020 Nicotiana tabacum HOM05D003034 ORTHO05D003815 9.2e-17 91.7 97 53.6
Thecc.04G177800 Theobroma cacao HOM05D003034 ORTHO05D003815 9.2e-17 91.7 101 57.4
BraA02t07133Z Brassica rapa HOM05D003034 ORTHO05D003815 1.2e-16 91.3 211 33.6
Carub.0001s1804 Capsella rubella HOM05D003034 ORTHO05D003815 2.0e-16 90.5 92 56.5
A02p21160 Brassica napus HOM05D003034 ORTHO05D003815 3.5e-16 89.7 211 33.2
Hma1.2p1_1940F.1_g308320 Hydrangea macrophylla HOM05D003034 ORTHO05D029951 3.5e-16 89.7 94 57.4
DCAR_019351 Daucus carota HOM05D003034 ORTHO05D003815 6.0e-16 89.0 91 53.8
HanXRQChr06g0165831 Helianthus annuus HOM05D003034 ORTHO05D003815 7.8e-16 88.6 70 64.3
BcaB05g25024 Brassica carinata HOM05D003034 ORTHO05D003815 1.3e-15 87.8 92 54.3
BolC2t09453H Brassica oleracea HOM05D003034 ORTHO05D003815 3.0e-15 86.7 99 52.5
CARHR019020 Cardamine hirsuta HOM05D003034 ORTHO05D003815 3.0e-15 86.7 95 54.7
Dinv41659 Davidia involucrata HOM05D003034 ORTHO05D003815 3.9e-15 86.3 78 62.8
PSO339G3427 Papaver somniferum HOM05D003034 ORTHO05D003815 3.9e-15 86.3 100 48.0
PSO333G0001 Papaver somniferum HOM05D003034 ORTHO05D003815 6.6e-15 85.5 98 49.0
SMO358G0498 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 8.6e-15 85.1 97 50.5
Os06g0218000 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 1.9e-14 84.0 96 50.0
AL1G30830 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 2.5e-14 83.6 94 52.1
Sopen11g009120 Solanum pennellii HOM05D003034 ORTHO05D003815 2.8e-13 80.1 111 41.4
MD02G1060600 Malus domestica HOM05D003034 ORTHO05D003815 3.6e-13 79.7 98 49.0
COL.COLO4_34758 Corchorus olitorius HOM05D003034 ORTHO05D003815 6.2e-13 79.0 95 51.6
Solyc11g017220.1 Solanum lycopersicum HOM05D003034 ORTHO05D003815 6.2e-13 79.0 92 46.7
Nitab4.5_0000363g0040 Nicotiana tabacum HOM05D003034 ORTHO05D285662 1.8e-12 77.4 88 52.3
QL12p007741 Quercus lobata HOM05D003034 ORTHO05D003815 2.3e-12 77.0 152 36.2
CARHR203500 Cardamine hirsuta HOM05D003034 ORTHO05D003815 5.8e-11 72.4 187 33.2
Cre01.g051100 Chlamydomonas reinhardtii HOM05D003034 ORTHO05D003815 1.7e-10 70.9 99 40.4
Nn2g13327 Nelumbo nucifera HOM05D003034 ORTHO05D029951 4.9e-10 69.3 49 73.5
Ciclev10012059m.g Citrus clementina HOM05D003034 ORTHO05D003815 8.3e-10 68.6 69 56.5
SMO271G0070 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 1.2e-08 64.7 66 54.5
Cfa023747 Carpinus fangiana HOM05D003034 ORTHO05D003815 2.1e-08 63.9 162 29.6
PGSC0003DMG400039821 Solanum tuberosum HOM05D003034 ORTHO05D003815 4.6e-08 62.8 111 37.8
Actinidia03787 Actinidia chinensis HOM05D003034 ORTHO05D003815 1.1e-06 58.2 36 75.0
Zm00001eb255550 Zea mays HOM05D003034 ORTHO05D003815 1.9e-06 57.4 36 72.2
FAN07G1834 Fragaria x ananassa HOM05D003034 ORTHO05D003815 2.5e-06 57.0 69 52.2
PRCOL_00001697 Prasinoderma coloniale HOM05D003034 ORTHO05D003815 7.3e-06 55.5 156 29.5
MCO01G467 Micromonas commoda HOM05D003034 ORTHO05D003815 9.5e-06 55.1 64 42.2


User provided reference genes

Program Settings