Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000915 Quercus lobata HOM05D000399 ORTHO05D000304 2.3e-60 235.3 116 100.0
QL08p006916 Quercus lobata HOM05D000399 ORTHO05D000304 1.4e-49 199.5 106 93.4
QL09p024256 Quercus lobata HOM05D000399 ORTHO05D000304 1.4e-49 199.5 106 93.4
QL08p006924 Quercus lobata HOM05D000399 ORTHO05D000304 5.5e-46 187.6 106 88.7
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 5.5e-46 187.6 106 88.7
Haze_09717 Corylus avellana HOM05D000399 ORTHO05D000304 3.6e-37 158.3 106 71.7
Cfa020304 Carpinus fangiana HOM05D000399 ORTHO05D000304 7.9e-37 157.1 106 70.8
CiPaw.12G132200 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.7e-35 151.0 106 70.8
CANSAT01G2756 Cannabis sativa HOM05D000399 ORTHO05D000304 4.8e-34 147.9 107 69.2
Thecc.07G031500 Theobroma cacao HOM05D000399 ORTHO05D000304 1.8e-33 146.0 106 69.8
Potri.011G086700 Populus trichocarpa HOM05D000399 ORTHO05D000304 2.0e-32 142.5 109 71.6
Duzib213G0551 Durio zibethinus HOM05D000399 ORTHO05D000304 3.5e-32 141.7 106 67.9
Atru.chr2.3497 Acer truncatum HOM05D000399 ORTHO05D000304 2.2e-31 139.0 106 66.0
Ciclev10008694m.g Citrus clementina HOM05D000399 ORTHO05D000304 5.0e-31 137.9 106 62.3
ClCG10G005250 Citrullus lanatus HOM05D000399 ORTHO05D000304 8.5e-31 137.1 106 63.2
CsaV3_4G013380 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.5e-30 136.3 106 60.4
QL08p008239 Quercus lobata HOM05D000399 ORTHO05D000304 1.5e-30 136.3 107 63.6
QL08p008278 Quercus lobata HOM05D000399 ORTHO05D000304 1.5e-30 136.3 107 67.3
CsaV3_3G004960 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.2e-30 135.2 106 60.4
TWI39G0857 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 3.2e-30 135.2 106 63.2
QL08p008192 Quercus lobata HOM05D000399 ORTHO05D000304 5.5e-30 134.4 106 65.1
MELO3C014194.2 Cucumis melo HOM05D000399 ORTHO05D000304 9.4e-30 133.7 106 61.3
Dinv40784 Davidia involucrata HOM05D000399 ORTHO05D000304 9.4e-30 133.7 106 63.2
Manes.15G068000 Manihot esculenta HOM05D000399 ORTHO05D000304 9.4e-30 133.7 106 62.3
arahy.Tifrunner.gnm1.ann1.7RWM6D Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-29 133.3 106 61.3
MD03G1196200 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-29 133.3 106 63.2
RcHm_v2.0_Chr5g0040931 Rosa chinensis HOM05D000399 ORTHO05D000304 1.2e-29 133.3 106 62.3
Lalb_Chr04g0248271 Lupinus albus HOM05D000399 ORTHO05D000304 1.6e-29 132.9 106 61.3
Sed0015579 Sechium edule HOM05D000399 ORTHO05D000304 2.1e-29 132.5 109 63.3
CSS0028681 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.6e-29 131.7 106 63.2
Gohir.D05G373200 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.6e-29 131.7 106 65.1
Gorai.009G441900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.6e-29 131.7 106 65.1
Oeu005523.2 Olea europaea HOM05D000399 ORTHO05D000304 6.1e-29 131.0 106 65.1
CSS0004286 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.0e-28 130.2 114 58.8
Lj1C878T5 Lonicera japonica HOM05D000399 ORTHO05D000304 1.0e-28 130.2 108 60.2
Gohir.A04G012700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.8e-28 129.4 106 63.2
MD11G1212500 Malus domestica HOM05D000399 ORTHO05D000304 1.8e-28 129.4 106 61.3
GSVIVG01037698001 Vitis vinifera HOM05D000399 ORTHO05D000304 2.3e-28 129.0 106 63.2
arahy.Tifrunner.gnm1.ann1.U657KI Arachis hypogaea HOM05D000399 ORTHO05D000304 6.7e-28 127.5 106 57.5
COL.COLO4_09700 Corchorus olitorius HOM05D001348 ORTHO05D000304 8.8e-28 127.1 106 61.3
Sed0023956 Sechium edule HOM05D000399 ORTHO05D000304 1.1e-27 126.7 106 61.3
TAR624G0323 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.1e-27 126.7 106 61.3
Actinidia35365 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.5e-27 126.3 106 62.3
Eucgr.F00717 Eucalyptus grandis HOM05D000399 ORTHO05D000304 2.6e-27 125.6 106 58.5
AUR62015826 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.3e-27 125.2 106 58.5
Hund23862 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.3e-27 125.2 106 59.4
TAR626G0927 Trochodendron aralioides HOM05D000399 ORTHO05D000304 5.7e-27 124.4 106 59.4
Cc05_g14090 Coffea canephora HOM05D000399 ORTHO05D000304 1.3e-26 123.2 106 59.4
QL05p059181 Quercus lobata HOM05D000399 ORTHO05D000304 1.3e-26 123.2 66 95.5
EL10Ac4g07760 Beta vulgaris HOM05D000399 ORTHO05D000304 1.7e-26 122.9 106 56.6
Migut.M01731 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.7e-26 122.9 106 62.3
Nitab4.5_0005265g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.7e-26 122.9 106 60.4
Prupe.4G219200 Prunus persica HOM05D000399 ORTHO05D000304 1.7e-26 122.9 106 59.4
AUR62020392 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.8e-26 122.1 106 57.5
PGR083G1485 Punica granatum HOM05D000399 ORTHO05D000304 2.8e-26 122.1 106 58.5
FAN25G1948 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.7e-26 121.7 109 56.0
FAN25G2496 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.7e-26 121.7 111 55.0
LjContig00272g0000787 Lotus japonicus HOM05D000399 ORTHO05D000304 4.8e-26 121.3 109 54.1
FvH4_3g23250 Fragaria vesca HOM05D000399 ORTHO05D000304 1.4e-25 119.8 111 55.0
Nitab4.5_0000981g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.8e-25 119.4 106 58.5
RhsimUnG0248400 Rhododendron simsii HOM05D000399 ORTHO05D000304 4.1e-25 118.2 106 57.5
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 1.2e-24 116.7 106 61.3
Prupe.4G219400 Prunus persica HOM05D000399 ORTHO05D000304 1.6e-24 116.3 105 58.1
FAN16G0322 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.0e-24 115.9 106 54.7
TAR629G3020 Trochodendron aralioides HOM05D000399 ORTHO05D000304 3.5e-24 115.2 109 57.8
MBI10_g29392_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 4.5e-24 114.8 106 55.7
SGA_v2.0_scaffold36G14385 Striga asiatica HOM05D000399 ORTHO05D000304 7.7e-24 114.0 106 62.3
Sc07g0002840 Simmondsia chinensis HOM05D000399 ORTHO05D000304 1.7e-23 112.8 106 55.7
FAN11G3687 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.9e-23 112.1 109 54.1
PGSC0003DMG400012864 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.9e-23 112.1 106 55.7
CAN.G952.2 Capsicum annuum HOM05D000399 ORTHO05D000304 6.5e-23 110.9 106 57.5
MELO3C014193.2 Cucumis melo HOM05D000399 ORTHO05D000304 6.5e-23 110.9 106 55.7
Sopen12g007270 Solanum pennellii HOM05D000399 ORTHO05D000304 6.5e-23 110.9 106 55.7
AUR62020393 Chenopodium quinoa HOM05D000399 ORTHO05D000304 8.5e-23 110.5 106 50.9
Solyc12g014410.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.5e-23 110.5 106 54.7
Ca_06337_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.1e-22 110.2 109 51.4
Cpa.g.sc12.267 Carica papaya HOM05D000399 ORTHO05D000304 1.5e-22 109.8 106 53.8
Nn1g03450 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.9e-22 109.4 106 57.5
Psat2g012440 Pisum sativum HOM05D000399 ORTHO05D000304 1.9e-22 109.4 106 51.9
SalBow8G1530 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.9e-22 109.4 106 59.4
TPR.G17891 Trifolium pratense HOM05D001608 ORTHO05D002070 1.9e-22 109.4 106 52.8
vmacro09696 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.9e-22 109.4 107 55.1
Ah.03g148780 Amaranthus hybridus HOM05D000399 ORTHO05D000304 2.5e-22 109.0 106 51.9
Medtr3g096700 Medicago truncatula HOM05D000399 ORTHO05D000304 3.2e-22 108.6 106 50.9
CsaV3_3G004950 Cucumis sativus L. HOM05D000399 ORTHO05D000304 5.5e-22 107.8 111 52.3
Lsat_1_v5_gn_7_114480 Lactuca sativa HOM05D000399 ORTHO05D000304 5.5e-22 107.8 106 51.9
HanXRQChr17g0546441 Helianthus annuus HOM05D000399 ORTHO05D000304 7.2e-22 107.5 109 53.2
PSO675G6810 Papaver somniferum HOM05D000399 ORTHO05D000304 7.2e-22 107.5 108 52.8
Hund23225 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.2e-21 106.7 106 53.8
PSO541G6031 Papaver somniferum HOM05D000399 ORTHO05D000304 1.6e-21 106.3 108 51.9
Peaxi162Scf00339g00079 Petunia axillaris HOM05D000399 ORTHO05D000304 2.1e-21 105.9 106 55.7
Aqoxy4G01902 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 4.7e-21 104.8 108 51.9
CsaV3_4G013400 Cucumis sativus L. HOM05D000399 ORTHO05D000304 6.1e-21 104.4 111 51.4
DCAR_016850 Daucus carota HOM05D000399 ORTHO05D000304 6.1e-21 104.4 107 51.4
TPR.G10756 Trifolium pratense HOM05D000399 ORTHO05D000304 1.4e-20 103.2 106 49.1
TPR.G1198 Trifolium pratense HOM05D000399 ORTHO05D000304 1.4e-20 103.2 106 51.9
C05p43940 Brassica napus HOM05D000399 ORTHO05D000304 3.0e-20 102.1 106 50.9
Lsat_1_v5_gn_3_14921 Lactuca sativa HOM05D000399 ORTHO05D000304 4.0e-20 101.7 108 51.9
SGA_v2.0_scaffold23G10212 Striga asiatica HOM05D000399 ORTHO05D000304 4.0e-20 101.7 112 57.1
BcaC01g01692 Brassica carinata HOM05D000399 ORTHO05D000304 5.2e-20 101.3 106 50.0
BcaC05g28326 Brassica carinata HOM05D000399 ORTHO05D000304 5.2e-20 101.3 106 50.0
BolC5t33112H Brassica oleracea HOM05D000399 ORTHO05D000304 5.2e-20 101.3 106 50.0
CAN.G492.19 Capsicum annuum HOM05D000399 ORTHO05D000304 8.8e-20 100.5 106 50.9
Sp3g18430 Schrenkiella parvula HOM05D000399 ORTHO05D000304 8.8e-20 100.5 106 48.1
Medtr8g058930 Medicago truncatula HOM05D000399 ORTHO05D000304 1.5e-19 99.8 106 45.3
ECA236G2771 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.0e-19 99.4 107 52.3
RcHm_v2.0_Chr5g0040941 Rosa chinensis HOM05D000399 ORTHO05D000304 2.0e-19 99.4 106 48.1
Aa31LG8G7230 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.4e-19 98.6 106 50.0
ECA248G1950 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.4e-19 98.6 106 51.9
Carub.0003s2036 Capsella rubella HOM05D000399 ORTHO05D000304 4.4e-19 98.2 106 48.1
AUR62015825 Chenopodium quinoa HOM05D000030 ORTHO05D000009 7.5e-19 97.4 106 48.1
AL3G34140 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 9.7e-19 97.1 106 49.1
EL10Ac4g07761 Beta vulgaris HOM05D000399 ORTHO05D000304 1.3e-18 96.7 105 51.4
Glyma.14G021600 Glycine max HOM05D000399 ORTHO05D000304 1.7e-18 96.3 113 49.6
A05p28480 Brassica napus HOM05D000399 ORTHO05D000304 4.8e-18 94.7 106 48.1
BraA05t21727Z Brassica rapa HOM05D000399 ORTHO05D000304 4.8e-18 94.7 106 48.1
AT3G20420 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 6.3e-18 94.4 106 47.2
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 8.3e-18 94.0 108 48.1
CDE11G1088 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.8e-17 92.8 106 47.2
HanXRQChr17g0546431 Helianthus annuus HOM05D000399 ORTHO05D000304 1.8e-17 92.8 106 51.9
Phvul.008G269800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 2.4e-17 92.4 111 46.8
THA.LOC104817859 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.4e-17 92.4 106 50.0
CARHR096130 Cardamine hirsuta HOM05D000399 ORTHO05D000304 7.0e-17 90.9 106 41.5
Thhalv10020929m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.2e-16 90.1 106 45.3
BcaB06g26107 Brassica carinata HOM05D000399 ORTHO05D000304 4.5e-16 88.2 106 46.2
VMungo0647G2567 Vigna mungo HOM05D000399 ORTHO05D000304 1.7e-15 86.3 114 43.9
HPP92_008857 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.2e-15 85.9 128 39.8
Rhsim13G0151000 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.0e-15 84.7 142 40.1
VMungo1309G1448 Vigna mungo HOM05D000399 ORTHO05D000304 1.5e-14 83.2 113 47.8
DCAR_030339 Daucus carota HOM05D000399 ORTHO05D000304 4.2e-14 81.6 106 44.3
Carub.0008s0304 Capsella rubella HOM05D000399 ORTHO05D000304 5.5e-14 81.3 120 43.3
Nitab4.5_0004927g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 9.4e-14 80.5 93 48.4
HPP92_005298 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.6e-13 79.7 129 36.4
Os05g0271300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.6e-13 78.6 111 43.2
TPR.G13409 Trifolium pratense HOM05D000399 ORTHO05D000304 5.2e-12 74.7 84 50.0
Lj5g0016531 Lotus japonicus HOM05D000399 ORTHO05D000304 8.8e-12 73.9 69 55.1
Prupe.4G219500 Prunus persica HOM05D000399 ORTHO05D000304 1.2e-11 73.6 108 41.7
Eucgr.F00718 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.5e-11 73.2 106 41.5
Prupe.4G219300 Prunus persica HOM05D000399 ORTHO05D000304 2.0e-11 72.8 108 46.3
PGSC0003DMG400014420 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.0e-11 72.8 62 61.3
Prupe.4G219600 Prunus persica HOM05D000399 ORTHO05D000304 4.4e-11 71.6 107 41.1
RcHm_v2.0_Chr5g0040511 Rosa chinensis HOM05D000399 ORTHO05D000304 9.8e-11 70.5 105 36.2
AL3G47530 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 2.2e-10 69.3 112 37.5
AT5G45150 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.8e-10 68.9 69 55.1
Carub.0008s0303 Capsella rubella HOM05D000399 ORTHO05D000304 3.7e-10 68.6 90 50.0
Zm00001eb346320 Zea mays HOM05D000399 ORTHO05D000304 4.8e-10 68.2 107 43.0
AL8G14050 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.1e-09 67.0 107 40.2
Carub.0003s2962 Capsella rubella HOM05D000399 ORTHO05D000304 1.4e-09 66.6 109 35.8
MD11G1212400 Malus domestica HOM05D000399 ORTHO05D000304 3.1e-09 65.5 112 43.8
QL08p008309 Quercus lobata HOM05D000399 ORTHO05D000304 5.4e-09 64.7 70 51.4
AL8G14040 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.2e-08 63.5 68 54.4
Lsat_1_v5_gn_7_109260 Lactuca sativa HOM05D000399 ORTHO05D000304 2.7e-08 62.4 106 35.8
Thhalv10000947m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 5.9e-08 61.2 106 37.7
Solyc10g006200.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.9e-06 56.2 99 40.4
ATR0681G320 Amborella trichopoda HOM05D000399 ORTHO05D000304 7.2e-06 54.3 54 50.0
ATR0681G349 Amborella trichopoda HOM05D000399 ORTHO05D000304 9.5e-06 53.9 97 39.2


User provided reference genes

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