Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g064400 Pisum sativum HOM05D005410 ORTHO05D007394 2.6e-89 332.0 166 100.0
Psat7g064480 Pisum sativum HOM05D005410 ORTHO05D007394 6.6e-53 211.1 150 74.0
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 1.4e-39 166.8 108 80.6
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 9.3e-39 164.1 96 87.5
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 9.3e-39 164.1 108 80.6
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 2.1e-38 162.9 108 77.8
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 2.1e-38 162.9 97 87.6
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 2.7e-38 162.5 108 77.8
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 4.6e-38 161.8 108 76.9
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 6.0e-38 161.4 123 68.3
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 1.3e-37 160.2 108 75.0
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 1.8e-37 159.8 108 75.9
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 2.3e-37 159.5 123 66.7
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 2.3e-37 159.5 108 75.9
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 3.0e-37 159.1 92 87.0
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 3.9e-37 158.7 108 75.0
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 5.1e-37 158.3 92 87.0
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 8.7e-37 157.5 108 74.1
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 8.7e-37 157.5 108 74.1
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 1.1e-36 157.1 123 66.7
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 1.1e-36 157.1 123 66.7
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 1.5e-36 156.8 124 68.5
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 1.5e-36 156.8 108 75.0
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 1.9e-36 156.4 108 75.9
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 1.9e-36 156.4 123 68.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.5e-36 156.0 108 75.9
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 2.5e-36 156.0 110 71.8
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 2.5e-36 156.0 108 74.1
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 3.3e-36 155.6 108 74.1
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 5.6e-36 154.8 97 81.4
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 7.4e-36 154.5 97 83.5
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 9.6e-36 154.1 123 65.0
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 9.6e-36 154.1 123 65.0
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 9.6e-36 154.1 123 65.0
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 9.6e-36 154.1 123 65.0
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 9.6e-36 154.1 123 65.0
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 9.6e-36 154.1 123 65.0
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 9.6e-36 154.1 95 81.1
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 9.6e-36 154.1 95 81.1
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 1.3e-35 153.7 123 64.2
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 1.3e-35 153.7 123 65.9
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 1.3e-35 153.7 108 74.1
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 1.6e-35 153.3 123 66.7
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 1.6e-35 153.3 123 65.9
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.6e-35 153.3 123 65.9
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.6e-35 153.3 123 65.9
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.6e-35 153.3 93 86.0
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 1.6e-35 153.3 95 81.1
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 2.1e-35 152.9 108 73.1
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 2.1e-35 152.9 110 70.9
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 2.8e-35 152.5 108 73.1
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 2.8e-35 152.5 123 65.9
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.8e-35 152.5 97 80.4
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 3.7e-35 152.1 110 69.1
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 3.7e-35 152.1 108 72.2
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 4.8e-35 151.8 123 64.2
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 4.8e-35 151.8 110 71.8
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 4.8e-35 151.8 110 71.8
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 6.2e-35 151.4 108 73.1
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 6.2e-35 151.4 123 66.7
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 8.1e-35 151.0 123 64.2
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 8.1e-35 151.0 123 65.0
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 8.1e-35 151.0 123 65.0
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 8.1e-35 151.0 108 71.3
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 1.1e-34 150.6 95 80.0
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 1.4e-34 150.2 123 65.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 1.4e-34 150.2 108 75.0
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 1.8e-34 149.8 97 80.4
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 1.8e-34 149.8 97 80.4
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 2.4e-34 149.4 123 63.4
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 3.1e-34 149.1 123 63.4
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 4.0e-34 148.7 123 64.2
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 4.0e-34 148.7 108 71.3
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 4.0e-34 148.7 97 80.4
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 4.0e-34 148.7 91 82.4
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 5.3e-34 148.3 123 62.6
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 9.0e-34 147.5 110 68.2
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 9.0e-34 147.5 108 69.4
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 1.2e-33 147.1 123 63.4
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 1.2e-33 147.1 123 63.4
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 1.5e-33 146.7 123 61.8
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 1.5e-33 146.7 108 69.4
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 3.4e-33 145.6 123 61.8
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 3.4e-33 145.6 97 77.3
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 4.5e-33 145.2 108 67.6
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 7.6e-33 144.4 108 69.4
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 1.0e-32 144.1 108 69.4
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.7e-32 143.3 97 76.3
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 2.2e-32 142.9 91 78.0
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 2.2e-32 142.9 104 71.2
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 2.2e-32 142.9 123 61.0
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 4.9e-32 141.7 109 67.9
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 4.9e-32 141.7 109 67.9
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 6.5e-32 141.4 107 67.3
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 1.4e-31 140.2 107 68.2
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 1.9e-31 139.8 108 69.4
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 3.2e-31 139.0 108 68.5
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 3.2e-31 139.0 108 68.5
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 3.2e-31 139.0 108 68.5
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 5.5e-31 138.3 107 67.3
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 1.2e-30 137.1 123 58.5
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 1.2e-30 137.1 108 68.5
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 4.6e-30 135.2 108 66.7
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 4.6e-30 135.2 88 76.1
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 4.6e-30 135.2 108 66.7
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 6.0e-30 134.8 108 66.7
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 3.0e-29 132.5 85 83.5
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 1.6e-27 126.7 92 69.6
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 2.9e-24 115.9 110 54.5
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 6.5e-24 114.8 110 53.6
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 4.2e-23 112.1 86 67.4
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 6.1e-22 108.2 86 61.6
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 3.0e-21 105.9 84 69.0
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 8.7e-21 104.4 68 83.8
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 3.7e-19 99.0 101 58.4
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 3.4e-17 92.4 81 58.0
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 9.4e-15 84.3 68 64.7
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 1.6e-14 83.6 81 56.8
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 2.8e-11 72.8 57 64.9
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 1.1e-10 70.9 43 74.4
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 1.5e-09 67.0 37 81.1
Psat7g064520 Pisum sativum HOM05D005410 ORTHO05D007394 2.6e-09 66.2 46 76.1
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 1.3e-08 63.9 102 37.3
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 5.0e-08 62.0 47 61.7
C06p10410 Brassica napus HOM05D005410 ORTHO05D040422 1.4e-07 60.5 47 63.8
BolC6t36118H Brassica oleracea HOM05D005410 ORTHO05D040422 1.4e-07 60.5 47 63.8
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 7.2e-07 58.2 154 31.8


User provided reference genes

Program Settings