Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.1e-176 623.2 317 100.0
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 8.8e-163 577.0 317 91.2
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 7.4e-162 573.9 317 89.6
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 7.4e-162 573.9 317 89.6
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 7.0e-160 567.4 315 88.9
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 3.7e-153 545.0 323 86.7
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 6.1e-148 527.7 321 85.0
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 8.0e-148 527.3 323 84.8
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 1.5e-146 523.1 323 83.9
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.2e-145 519.2 319 82.1
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.1e-144 516.9 317 82.3
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 3.5e-143 511.9 322 83.9
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.1e-136 490.3 324 78.4
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 4.1e-136 488.4 358 72.9
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 3.8e-134 481.9 324 76.5
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.5e-133 477.2 324 76.2
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.8e-132 475.7 316 74.1
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.0e-131 472.2 324 74.7
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 4.0e-131 471.9 321 76.0
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 8.9e-131 470.7 323 74.6
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 1.5e-130 469.9 320 75.6
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 2.6e-130 469.2 320 76.2
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.3e-129 466.8 321 75.1
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.7e-129 466.5 322 75.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 3.7e-129 465.3 319 75.2
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 3.7e-129 465.3 320 75.3
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 6.4e-129 464.5 323 73.4
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 6.4e-129 464.5 323 75.5
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.2e-127 460.3 323 72.4
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 1.2e-127 460.3 326 73.9
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 1.6e-127 459.9 364 67.3
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 2.0e-127 459.5 324 73.1
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 3.5e-127 458.8 319 74.6
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 4.6e-127 458.4 313 75.1
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 8.6e-126 454.1 305 76.7
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.5e-125 452.6 337 71.8
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 2.8e-124 449.1 320 69.4
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.3e-123 446.0 320 68.8
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 2.6e-122 442.6 320 68.4
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 7.5e-122 441.0 329 69.6
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 2.2e-121 439.5 307 75.6
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.9e-121 438.3 318 72.6
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 6.4e-121 438.0 327 69.1
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.4e-120 436.8 319 72.7
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 3.5e-119 432.2 318 69.5
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.7e-118 429.9 320 65.9
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.7e-118 429.9 318 70.1
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.3e-118 429.5 309 68.6
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 8.6e-118 427.6 305 69.5
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.6e-117 424.9 322 65.2
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 5.6e-117 424.9 320 69.1
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 4.7e-116 421.8 320 69.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 8.1e-116 421.0 318 69.5
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.4e-115 420.2 324 69.4
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 9.8e-114 414.1 315 70.8
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.7e-113 413.3 321 68.2
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.2e-113 412.9 323 64.7
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.9e-113 411.8 321 67.9
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 8.3e-113 411.0 324 65.4
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.9e-112 409.8 321 68.5
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.1e-112 408.7 305 70.8
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.7e-111 406.0 296 71.3
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.0e-110 404.1 324 65.1
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.0e-110 404.1 291 68.7
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 3.0e-110 402.5 299 68.2
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 8.6e-110 401.0 326 62.9
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 1.1e-109 400.6 316 65.2
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.5e-109 400.2 323 65.3
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 3.3e-109 399.1 300 65.7
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 7.3e-109 397.9 321 67.0
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 2.1e-108 396.4 323 65.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 2.3e-107 392.9 242 84.3
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 2.6e-106 389.4 299 66.2
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 3.4e-106 389.0 298 65.8
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 3.4e-106 389.0 299 65.9
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 5.8e-106 388.3 306 66.3
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.7e-105 386.7 299 65.9
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 2.9e-105 386.0 303 65.0
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 2.9e-105 386.0 299 65.2
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.4e-104 383.6 322 61.8
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.4e-104 383.6 299 65.6
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.9e-104 383.3 303 64.7
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 4.1e-104 382.1 302 63.2
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 5.4e-104 381.7 293 67.9
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.6e-103 380.2 295 65.4
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 3.5e-103 379.0 291 64.6
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-101 373.2 294 66.3
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 5.6e-101 371.7 281 66.5
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 9.6e-101 370.9 303 63.4
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 1.2e-100 370.5 317 64.0
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.6e-100 369.0 307 64.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 4.7e-100 368.6 317 64.0
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 1.4e-96 357.1 271 67.2
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 3.2e-96 355.9 317 61.8
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.2e-95 354.0 311 62.4
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.7e-95 352.8 281 62.3
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 6.0e-95 351.7 377 50.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 3.0e-94 349.4 318 60.7
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.1e-92 343.2 341 58.4
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 2.8e-92 342.8 337 55.2
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.2e-90 337.4 322 55.3
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.5e-90 337.0 309 60.2
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.2e-82 310.8 223 73.5
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 2.3e-78 296.6 306 51.3
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 8.7e-78 294.7 221 71.0
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 1.2e-71 274.2 197 74.1
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.5e-69 266.5 225 66.2
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 1.4e-64 250.8 296 46.6
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.9e-64 250.4 157 75.8
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 5.5e-64 248.8 311 46.6
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.5e-61 240.7 227 60.4
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 4.2e-56 222.6 343 39.1
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 4.1e-51 206.1 207 58.0
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.1e-39 167.2 108 77.8
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.2e-32 143.3 97 69.1
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 4.2e-32 142.9 93 71.0
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.0e-29 134.0 176 52.3
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 2.6e-29 133.7 297 33.7
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 8.3e-28 128.6 85 72.9
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 8.3e-28 128.6 85 72.9
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.0e-25 121.7 347 28.2
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 6.1e-23 112.5 345 26.7
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 8.0e-23 112.1 72 73.6
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.0e-17 95.1 86 61.6
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.0e-17 95.1 84 63.1
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.0e-17 95.1 86 61.6
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 1.5e-16 91.3 81 63.0
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 5.6e-16 89.4 79 60.8
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 9.5e-16 88.6 52 78.8
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 3.0e-14 83.6 91 48.4
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 2.0e-13 80.9 109 45.9
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 1.1e-11 75.1 299 23.7
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.4e-11 74.7 44 72.7
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 3.2e-11 73.6 65 66.2
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.0e-10 70.9 64 54.7
TPR.G25443 Trifolium pratense HOM05D000254 ORTHO05D000165 1.6e-07 61.2 44 72.7
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 4.7e-07 59.7 46 69.6


User provided reference genes

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