Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g232440 Pisum sativum HOM05D000396 ORTHO05D001816 1.3e-64 249.6 127 100.0
Psat3g006160 Pisum sativum HOM05D000923 ORTHO05D001816 4.6e-30 134.8 126 63.5
Psat1g219160 Pisum sativum HOM05D000396 ORTHO05D001816 1.6e-27 126.3 71 83.1
Medtr2g008120 Medicago truncatula HOM05D000396 ORTHO05D001816 3.8e-24 115.2 63 84.1
TPR.G19722 Trifolium pratense HOM05D000396 ORTHO05D001816 3.8e-24 115.2 68 76.5
Ca_00109_v3 Cicer arietinum L. HOM05D000396 ORTHO05D001816 1.1e-23 113.6 63 81.0
Medtr6g071995 Medicago truncatula HOM05D000396 ORTHO05D001816 3.5e-22 108.6 60 85.0
Glyma.15G050600 Glycine max HOM05D000396 ORTHO05D001816 7.9e-22 107.5 63 74.6
Glyma.08G181700 Glycine max HOM05D000396 ORTHO05D001816 2.3e-21 105.9 60 78.3
Lj6g0013354 Lotus japonicus HOM05D000396 ORTHO05D001816 5.1e-21 104.8 63 74.6
Aqoxy5G02130 Aquilegia oxysepala HOM05D000396 ORTHO05D001816 2.5e-20 102.4 60 76.7
Ah.05g167780 Amaranthus hybridus HOM05D000396 ORTHO05D001816 1.6e-19 99.8 82 56.1
HanXRQChr10g0293251 Helianthus annuus HOM05D000396 ORTHO05D001816 2.2e-19 99.4 62 71.0
ECA234G2739 Erigeron canadensis HOM05D000396 ORTHO05D001816 2.8e-19 99.0 64 68.8
Lalb_Chr20g0123211 Lupinus albus HOM05D000396 ORTHO05D001816 4.8e-19 98.2 63 68.3
Lsat_1_v5_gn_5_106560 Lactuca sativa HOM05D000396 ORTHO05D001816 6.3e-19 97.8 64 67.2
unitig_26.g9288 Utricularia gibba HOM05D000396 ORTHO05D001816 6.3e-19 97.8 62 69.4
EL10Ac1g01518 Beta vulgaris HOM05D000396 ORTHO05D001816 8.2e-19 97.4 59 71.2
Dinv24238 Davidia involucrata HOM05D000396 ORTHO05D001816 8.2e-19 97.4 61 70.5
Prupe.1G560500 Prunus persica HOM05D000396 ORTHO05D001816 1.1e-18 97.1 58 74.1
SGA_v2.0_scaffold611G53185 Striga asiatica HOM05D000396 ORTHO05D001816 1.4e-18 96.7 60 70.0
BcaB04g17750 Brassica carinata HOM05D000396 ORTHO05D001816 1.8e-18 96.3 63 65.1
Hma1.2p1_0217F.1_g091530 Hydrangea macrophylla HOM05D000396 ORTHO05D001816 2.4e-18 95.9 58 72.4
ATR0772G131 Amborella trichopoda HOM05D000396 ORTHO05D001816 3.1e-18 95.5 57 73.7
DCAR_001810 Daucus carota HOM05D000396 ORTHO05D001816 3.1e-18 95.5 58 72.4
DCAR_029220 Daucus carota HOM05D000396 ORTHO05D001816 3.1e-18 95.5 58 70.7
PGSC0003DMG400029122 Solanum tuberosum HOM05D000396 ORTHO05D001816 3.1e-18 95.5 66 68.2
VMungo0540G1676 Vigna mungo HOM05D000396 ORTHO05D001816 3.1e-18 95.5 65 64.6
Lj9C317T2 Lonicera japonica HOM05D000396 ORTHO05D001816 4.1e-18 95.1 58 70.7
Sabra05G0145600 Salix brachista HOM05D000396 ORTHO05D001816 4.1e-18 95.1 56 75.0
arahy.Tifrunner.gnm1.ann1.ARB3KQ Arachis hypogaea HOM05D000396 ORTHO05D001816 5.3e-18 94.7 59 69.5
Cfa005574 Carpinus fangiana HOM05D000396 ORTHO05D001816 5.3e-18 94.7 59 71.2
SHI09286 Sapria himalayana HOM05D000396 ORTHO05D001816 5.3e-18 94.7 56 73.2
Sopen04g027090 Solanum pennellii HOM05D000396 ORTHO05D001816 5.3e-18 94.7 66 68.2
THA.LOC104806853 Tarenaya hassleriana HOM05D000396 ORTHO05D001816 5.3e-18 94.7 125 44.0
Lj7C371G11 Lonicera japonica HOM05D000396 ORTHO05D001816 6.9e-18 94.4 62 67.7
arahy.Tifrunner.gnm1.ann1.K144IY Arachis hypogaea HOM05D000396 ORTHO05D001816 9.0e-18 94.0 59 69.5
arahy.Tifrunner.gnm1.ann1.K519JC Arachis hypogaea HOM05D000396 ORTHO05D001816 9.0e-18 94.0 59 69.5
arahy.Tifrunner.gnm1.ann1.Y1T38L Arachis hypogaea HOM05D000396 ORTHO05D001816 9.0e-18 94.0 59 69.5
Phvul.002G204900 Phaseolus vulgaris HOM05D000396 ORTHO05D001816 9.0e-18 94.0 59 69.5
Phvul.006G209300 Phaseolus vulgaris HOM05D000396 ORTHO05D001816 9.0e-18 94.0 58 74.1
CSS0049130 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 1.2e-17 93.6 60 70.0
AUR62026732 Chenopodium quinoa HOM05D000396 ORTHO05D001816 1.2e-17 93.6 59 67.8
MELO3C008357.2 Cucumis melo HOM05D000396 ORTHO05D001816 1.2e-17 93.6 57 71.9
Solyc04g071140.3 Solanum lycopersicum HOM05D000396 ORTHO05D001816 1.2e-17 93.6 66 66.7
TWI34G1384 Tripterygium wilfordii HOM05D000396 ORTHO05D001816 1.2e-17 93.6 58 69.0
Glyma.08G076400 Glycine max HOM05D000396 ORTHO05D001816 1.5e-17 93.2 59 67.8
QL02p024176 Quercus lobata HOM05D000396 ORTHO05D001816 1.5e-17 93.2 59 69.5
PGSC0003DMG400000785 Solanum tuberosum HOM05D000396 ORTHO05D001816 1.5e-17 93.2 66 66.7
Aa31LG6G9720 Aethionema arabicum HOM05D000396 ORTHO05D001816 2.0e-17 92.8 104 47.1
CANSAT25G1491 Cannabis sativa HOM05D000396 ORTHO05D001816 2.0e-17 92.8 58 69.0
Peaxi162Scf01292g00029 Petunia axillaris HOM05D000396 ORTHO05D001816 2.0e-17 92.8 58 72.4
THA.LOC104798877 Tarenaya hassleriana HOM05D000396 ORTHO05D001816 2.0e-17 92.8 105 50.5
arahy.Tifrunner.gnm1.ann1.AI1DXZ Arachis hypogaea HOM05D000396 ORTHO05D001816 2.6e-17 92.4 57 70.2
arahy.Tifrunner.gnm1.ann1.DH627J Arachis hypogaea HOM05D000396 ORTHO05D001816 2.6e-17 92.4 57 70.2
ClCG08G006920 Citrullus lanatus HOM05D000396 ORTHO05D001816 2.6e-17 92.4 57 70.2
Potri.005G190500 Populus trichocarpa HOM05D000396 ORTHO05D001816 2.6e-17 92.4 56 71.4
RcHm_v2.0_Chr6g0276311 Rosa chinensis HOM05D000396 ORTHO05D001816 2.6e-17 92.4 57 70.2
Aa31LG9G12350 Aethionema arabicum HOM05D000396 ORTHO05D001816 3.4e-17 92.0 63 65.1
AUR62013549 Chenopodium quinoa HOM05D000396 ORTHO05D001816 3.4e-17 92.0 59 67.8
Haze_10790 Corylus avellana HOM05D000396 ORTHO05D001816 3.4e-17 92.0 59 67.8
FAN15G0585 Fragaria x ananassa HOM05D000396 ORTHO05D001816 3.4e-17 92.0 58 69.0
FAN20G2508 Fragaria x ananassa HOM05D000396 ORTHO05D001816 3.4e-17 92.0 58 69.0
SalBow7G0219 Salvia bowleyana HOM05D000396 ORTHO05D001816 3.4e-17 92.0 56 71.4
SalBow7G0602 Salvia bowleyana HOM05D000396 ORTHO05D001816 3.4e-17 92.0 56 71.4
Sed0002939 Sechium edule HOM05D000396 ORTHO05D001816 3.4e-17 92.0 59 69.5
A08p07460 Brassica napus HOM05D000396 ORTHO05D001816 4.5e-17 91.7 70 60.0
BraA08t32760Z Brassica rapa HOM05D000396 ORTHO05D001816 4.5e-17 91.7 70 60.0
CSS0024937 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 4.5e-17 91.7 90 53.3
FvH4_2g14160 Fragaria vesca HOM05D000396 ORTHO05D001816 4.5e-17 91.7 57 70.2
FAN24G3281 Fragaria x ananassa HOM05D000396 ORTHO05D001816 4.5e-17 91.7 57 70.2
PGR044G1439 Punica granatum HOM05D000396 ORTHO05D001816 4.5e-17 91.7 57 70.2
TAR628G0024 Trochodendron aralioides HOM05D000396 ORTHO05D001816 4.5e-17 91.7 65 64.6
CsaV3_1G019620 Cucumis sativus L. HOM05D000396 ORTHO05D001816 5.9e-17 91.3 57 68.4
CsaV3_6G005330 Cucumis sativus L. HOM05D000396 ORTHO05D001816 5.9e-17 91.3 57 68.4
MD10G1023600 Malus domestica HOM05D000396 ORTHO05D001816 5.9e-17 91.3 60 63.3
AL1G51830 Arabidopsis lyrata HOM05D000396 ORTHO05D001816 7.6e-17 90.9 63 65.1
MD05G1021600 Malus domestica HOM05D000396 ORTHO05D001816 7.6e-17 90.9 60 63.3
Potri.002G069800 Populus trichocarpa HOM05D000396 ORTHO05D001816 7.6e-17 90.9 56 71.4
Thecc.08G149200 Theobroma cacao HOM05D000396 ORTHO05D001816 7.6e-17 90.9 58 69.0
MSTRG.25315 Avicennia marina HOM05D000396 ORTHO05D001816 1.0e-16 90.5 67 61.2
Migut.C01009 Erythranthe guttata HOM05D000396 ORTHO05D001816 1.0e-16 90.5 56 69.6
Manes.18G090400 Manihot esculenta HOM05D000396 ORTHO05D001816 1.0e-16 90.5 56 69.6
Sabra02G0054500 Salix brachista HOM05D000396 ORTHO05D001816 1.0e-16 90.5 62 66.1
BcaC04g22043 Brassica carinata HOM05D000396 ORTHO05D001816 1.3e-16 90.1 60 65.0
BolC9t55331H Brassica oleracea HOM05D000396 ORTHO05D001816 1.3e-16 90.1 60 65.0
CDE06G0991 Ceratophyllum demersum HOM05D000396 ORTHO05D001816 1.3e-16 90.1 57 70.2
Nitab4.5_0000032g0410 Nicotiana tabacum HOM05D000396 ORTHO05D001816 1.3e-16 90.1 62 69.4
Nitab4.5_0004908g0060 Nicotiana tabacum HOM05D000396 ORTHO05D001816 1.3e-16 90.1 62 69.4
Oeu046017.1 Olea europaea HOM05D000396 ORTHO05D000116 1.3e-16 90.1 58 65.5
Sc02g0004210 Simmondsia chinensis HOM05D000396 ORTHO05D001816 1.3e-16 90.1 61 62.3
BcaB07g31119 Brassica carinata HOM05D000396 ORTHO05D001816 1.7e-16 89.7 63 63.5
BcaB07g33978 Brassica carinata HOM05D000396 ORTHO05D001816 1.7e-16 89.7 66 59.1
BcaC07g37442 Brassica carinata HOM05D000396 ORTHO05D001816 1.7e-16 89.7 63 65.1
C08p09160 Brassica napus HOM05D000396 ORTHO05D001816 1.7e-16 89.7 63 65.1
BolC8t47765H Brassica oleracea HOM05D000396 ORTHO05D001816 1.7e-16 89.7 63 65.1
CSS0000714 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 1.7e-16 89.7 57 66.7
CiPaw.15G017300 Carya illinoinensis HOM05D000396 ORTHO05D001816 1.7e-16 89.7 56 71.4
COL.COLO4_24673 Corchorus olitorius HOM05D000396 ORTHO05D001816 1.7e-16 89.7 58 67.2
Dinv41096 Davidia involucrata HOM05D000396 ORTHO05D001816 1.7e-16 89.7 99 51.5
Nn5g28703 Nelumbo nucifera HOM05D000396 ORTHO05D001816 1.7e-16 89.7 58 65.5
Sp1g32730 Schrenkiella parvula HOM05D000396 ORTHO05D001816 1.7e-16 89.7 99 47.5
TWI32G0250 Tripterygium wilfordii HOM05D000396 ORTHO05D001816 1.7e-16 89.7 57 66.7
TAR381G1207 Trochodendron aralioides HOM05D000396 ORTHO05D001816 1.7e-16 89.7 58 67.2
A05p21820 Brassica napus HOM05D000396 ORTHO05D001816 2.2e-16 89.4 60 65.0
A09p19130 Brassica napus HOM05D000396 ORTHO05D001816 2.2e-16 89.4 60 65.0
C09p24130 Brassica napus HOM05D000396 ORTHO05D001816 2.2e-16 89.4 60 65.0
BolC5t32392H Brassica oleracea HOM05D000396 ORTHO05D001816 2.2e-16 89.4 60 65.0
BraA05t21103Z Brassica rapa HOM05D000396 ORTHO05D001816 2.2e-16 89.4 60 65.0
BraA09t37531Z Brassica rapa HOM05D000396 ORTHO05D001816 2.2e-16 89.4 60 65.0
CSS0015648 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 2.2e-16 89.4 90 52.2
CDE08G0925 Ceratophyllum demersum HOM05D000396 ORTHO05D001816 2.2e-16 89.4 57 70.2
Thhalv10011430m.g Eutrema salsugineum HOM05D000396 ORTHO05D001816 3.8e-16 88.6 60 65.0
Prupe.8G026000 Prunus persica HOM05D000396 ORTHO05D001816 3.8e-16 88.6 60 63.3
Gohir.A05G242800 Gossypium hirsutum HOM05D000396 ORTHO05D001816 5.0e-16 88.2 58 65.5
Pp3c4_17670 Physcomitrium patens HOM05D000396 ORTHO05D001816 5.0e-16 88.2 58 62.1
Actinidia29523 Actinidia chinensis HOM05D000396 ORTHO05D001816 6.5e-16 87.8 57 66.7
CSS0040629 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 6.5e-16 87.8 57 64.9
Carub.0001s3473 Capsella rubella HOM05D000396 ORTHO05D001816 6.5e-16 87.8 60 66.7
Duzib116G0266 Durio zibethinus HOM05D000396 ORTHO05D001816 6.5e-16 87.8 56 67.9
PGR042G2484 Punica granatum HOM05D000396 ORTHO05D001816 6.5e-16 87.8 55 69.1
PGR122G0002 Punica granatum HOM05D000396 ORTHO05D001816 6.5e-16 87.8 55 69.1
Actinidia01150 Actinidia chinensis HOM05D000396 ORTHO05D001816 8.5e-16 87.4 57 66.7
Eucgr.F04257 Eucalyptus grandis HOM05D000396 ORTHO05D001816 8.5e-16 87.4 57 64.9
SMO174G0152 Selaginella moellendorffii HOM05D000396 ORTHO05D001816 1.1e-15 87.0 57 64.9
SGA_v2.0_scaffold48G17975 Striga asiatica HOM05D000396 ORTHO05D001816 1.1e-15 87.0 57 71.9
GSVIVG01034903001 Vitis vinifera HOM05D000396 ORTHO05D001816 1.1e-15 87.0 56 66.1
BcaB02g11372 Brassica carinata HOM05D000396 ORTHO05D001816 1.4e-15 86.7 57 64.9
BcaC05g27668 Brassica carinata HOM05D000396 ORTHO05D001816 1.4e-15 86.7 60 63.3
C05p36530 Brassica napus HOM05D000396 ORTHO05D001816 1.4e-15 86.7 60 63.3
Haze_17741 Corylus avellana HOM05D000396 ORTHO05D001816 1.4e-15 86.7 56 66.1
Gohir.D05G244300 Gossypium hirsutum HOM05D000396 ORTHO05D001816 1.4e-15 86.7 58 63.8
Gorai.009G253400 Gossypium raimondii HOM05D000396 ORTHO05D001816 1.4e-15 86.7 58 63.8
MSTRG.1357 Avicennia marina HOM05D000396 ORTHO05D001816 1.9e-15 86.3 60 61.7
Gohir.A01G197700 Gossypium hirsutum HOM05D000396 ORTHO05D001816 1.9e-15 86.3 58 62.1
Gohir.D01G187900 Gossypium hirsutum HOM05D000396 ORTHO05D001816 1.9e-15 86.3 58 62.1
Gorai.002G231300 Gossypium raimondii HOM05D000396 ORTHO05D001816 1.9e-15 86.3 58 62.1
SEGI_24105 Sequoiadendron giganteum HOM05D000396 ORTHO05D001816 1.9e-15 86.3 58 62.1
arahy.Tifrunner.gnm1.ann1.F4NS5X Arachis hypogaea HOM05D000396 ORTHO05D001816 2.5e-15 85.9 51 70.6
Ciclev10000775m.g Citrus clementina HOM05D000396 ORTHO05D001816 2.5e-15 85.9 57 63.2
HPP92_026235 Vanilla planifolia HOM05D000396 ORTHO05D001816 3.2e-15 85.5 58 65.5
AT1G43710 Arabidopsis thaliana HOM05D000396 ORTHO05D001816 4.2e-15 85.1 60 65.0
Zm00001eb243180 Zea mays HOM05D000396 ORTHO05D001816 4.2e-15 85.1 61 62.3
CARHR035550 Cardamine hirsuta HOM05D000396 ORTHO05D001816 5.5e-15 84.7 57 66.7
Cpa.g.sc21.183 Carica papaya HOM05D000396 ORTHO05D001816 5.5e-15 84.7 113 40.7
MSTRG.24212 Avicennia marina HOM05D000396 ORTHO05D001816 7.2e-15 84.3 58 60.3
Duzib041G0595 Durio zibethinus HOM05D000396 ORTHO05D001816 7.2e-15 84.3 58 58.6
Mapoly0067s0048 Marchantia polymorpha HOM05D000396 ORTHO05D001816 9.4e-15 84.0 54 64.8
MBI12_g36304_MAGBIO Magnolia biondii HOM05D000396 ORTHO05D001816 1.2e-14 83.6 56 60.7
Pp3c3_22850 Physcomitrium patens HOM05D000396 ORTHO05D001816 1.6e-14 83.2 64 56.2
arahy.Tifrunner.gnm1.ann1.RK7RJ4 Arachis hypogaea HOM05D000396 ORTHO05D001816 2.1e-14 82.8 58 58.6
Manes.02G177900 Manihot esculenta HOM05D000396 ORTHO05D001816 3.6e-14 82.0 56 64.3
PSO541G6191 Papaver somniferum HOM05D000396 ORTHO05D001816 3.6e-14 82.0 69 60.9
PSO675G7025 Papaver somniferum HOM05D000396 ORTHO05D001816 3.6e-14 82.0 69 60.9
arahy.Tifrunner.gnm1.ann1.2WK1A7 Arachis hypogaea HOM05D000396 ORTHO05D001816 6.1e-14 81.3 58 56.9
Nn1g06118 Nelumbo nucifera HOM05D000396 ORTHO05D001816 1.4e-13 80.1 58 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1470 Anthoceros agrestis HOM05D000396 ORTHO05D001816 2.3e-13 79.3 54 59.3
CSS0043348 Camellia sinensis var. sinensis HOM05D000396 ORTHO05D001816 3.0e-13 79.0 58 58.6
Manes.18G090416 Manihot esculenta HOM05D000396 ORTHO05D001816 5.1e-13 78.2 56 58.9
AUR62030245 Chenopodium quinoa HOM05D000396 ORTHO05D001816 5.7e-12 74.7 66 47.0
Sed0006775 Sechium edule HOM05D000396 ORTHO05D001816 8.2e-11 70.9 67 53.7
Lsat_1_v5_gn_6_4821 Lactuca sativa HOM05D000396 ORTHO05D001816 1.4e-10 70.1 50 58.0
Sed0000235 Sechium edule HOM05D000396 ORTHO05D001816 9.1e-10 67.4 59 52.5
ATR0820G195 Amborella trichopoda HOM05D000396 ORTHO05D001816 1.2e-09 67.0 53 56.6
DCAR_014427 Daucus carota HOM05D000396 ORTHO05D001816 5.9e-09 64.7 62 45.2
QL11p018632 Quercus lobata HOM05D000396 ORTHO05D001816 7.7e-09 64.3 39 69.2
CAN.G175.4 Capsicum annuum HOM05D000396 ORTHO05D001816 1.0e-08 63.9 40 65.0
Psat2g118760 Pisum sativum HOM05D002048 ORTHO05D002146 1.3e-08 63.5 41 82.9
Lsat_1_v5_gn_5_106640 Lactuca sativa HOM05D000396 ORTHO05D001816 2.9e-08 62.4 42 61.9
Oeu019811.1 Olea europaea HOM05D000396 ORTHO05D001816 2.9e-08 62.4 43 67.4
CBR_g24274 Chara braunii HOM05D000396 ORTHO05D001816 3.8e-08 62.0 61 49.2
AUR62027867 Chenopodium quinoa HOM05D000396 ORTHO05D001816 5.0e-08 61.6 59 47.5
AUR62019033 Chenopodium quinoa HOM05D000396 ORTHO05D001816 1.1e-07 60.5 58 51.7
AUR62027868 Chenopodium quinoa HOM05D000396 ORTHO05D001816 1.4e-07 60.1 58 51.7
Psat0s14g0080 Pisum sativum HOM05D002015 ORTHO05D001755 2.5e-07 59.3 29 93.1
CBR_g24393 Chara braunii HOM05D000396 ORTHO05D001816 7.2e-07 57.8 50 48.0
Dinv41095 Davidia involucrata HOM05D000396 ORTHO05D001816 7.2e-07 57.8 60 51.7
TWI60G1232 Tripterygium wilfordii HOM05D000396 ORTHO05D001816 7.2e-07 57.8 57 45.6
VMungo0251G0917 Vigna mungo HOM05D000396 ORTHO05D001816 1.6e-06 56.6 38 60.5
PSO210G4348 Papaver somniferum HOM05D000396 ORTHO05D001816 7.9e-06 54.3 56 48.2


User provided reference genes

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