Gene: AT1G43710

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G43710
  • Transcript Identifier AT1G43710.1
  • Gene Type Coding gene
  • Location Chr1 : 16486534-16488298 : negative

Gene Family Information

  • ID HOM05D000396
  • #Genes/#Species 1257/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G43710.1
  • symbol EMB1075
  • Alias ATSDC1,Arabidopsis thaliana serine decarboxylase 1,SDC1,serine decarboxylase 1
  • full_name embryo defective 1075
  • uniprot Q9MA74

Descriptions

  • Description Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
  • Computational description embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019752
IEA
Gene Ontologycarboxylic acid metabolic process
GO:0019752
IEA
InterProcarboxylic acid metabolic process
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0006580
IMP
Gene Ontologyethanolamine metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016831
IEA
GOA Databasecarboxy-lyase activity
GO:0030170
IEA
Gene Ontologypyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0016830
IEA
GOA Databasecarbon-carbon lyase activity
GO:0016830
IEA
InterProcarbon-carbon lyase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0102705
IEA
GOA Databaseserine decarboxylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
IDA
Gene Ontologycytosol1
GO:0005886
IDA
Gene Ontologyplasma membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR002129 Pyridoxal phosphate-dependent decarboxylase
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
Mapman id Description
5.2.4.1.1 Lipid metabolism.glycerolipid biosynthesis.phosphatidylethanolamine.CDP-ethanolamine pathway.serine decarboxylase