Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.9e-146 521.9 271 100.0
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 5.1e-135 484.6 271 92.3
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 5.2e-132 474.6 271 91.1
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.9e-126 456.1 272 88.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 2.8e-125 452.2 274 85.8
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.1e-124 450.3 274 86.5
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.2e-121 438.3 272 86.0
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 5.4e-121 438.0 273 85.7
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.3e-119 432.6 273 85.0
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 2.0e-115 419.5 272 82.4
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 3.2e-113 412.1 275 80.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 4.6e-112 408.3 274 82.1
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.0e-111 407.1 275 80.0
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.3e-111 406.8 275 80.0
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.5e-110 403.3 278 80.2
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 2.5e-110 402.5 277 79.8
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 5.6e-110 401.4 278 78.8
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.8e-109 399.1 275 78.9
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.8e-109 399.1 279 78.1
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 8.2e-109 397.5 277 78.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-108 397.1 277 77.6
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.4e-108 396.7 276 78.3
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.4e-108 396.7 274 78.5
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.4e-108 396.0 276 77.2
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.1e-108 395.6 277 77.3
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 3.1e-108 395.6 277 78.3
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.3e-108 394.8 277 77.3
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 6.9e-108 394.4 270 78.9
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.0e-108 394.0 277 77.3
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.5e-107 393.3 282 75.9
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.6e-107 392.5 276 76.8
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.6e-107 391.0 277 76.9
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 7.6e-107 391.0 277 76.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.0e-106 390.6 275 76.4
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 2.2e-106 389.4 277 77.3
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 4.9e-106 388.3 273 75.1
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 8.4e-106 387.5 273 76.9
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 8.4e-106 387.5 273 76.9
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.1e-105 387.1 275 77.5
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.4e-105 386.7 275 77.5
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 4.2e-105 385.2 275 77.8
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 5.5e-105 384.8 276 76.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.1e-105 384.4 273 75.8
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.2e-104 383.6 279 74.6
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 6.0e-104 381.3 276 76.4
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 7.9e-104 380.9 275 76.7
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.0e-103 380.6 274 74.5
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.3e-103 379.4 273 76.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.3e-103 379.4 273 76.6
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.9e-103 378.6 273 75.5
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 5.1e-103 378.3 276 75.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 5.1e-103 378.3 276 75.0
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 5.1e-103 378.3 274 76.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.5e-102 376.7 276 75.4
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.9e-102 376.3 273 76.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 3.3e-102 375.6 278 74.5
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 9.7e-102 374.0 274 75.9
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.3e-101 373.6 268 75.4
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.2e-101 372.9 275 77.1
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 2.2e-101 372.9 275 74.5
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 4.8e-101 371.7 277 74.4
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 6.3e-101 371.3 275 73.5
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.4e-100 370.2 276 76.4
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 1.8e-100 369.8 274 75.2
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 6.9e-100 367.9 274 75.5
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 9.0e-100 367.5 282 72.7
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.5e-99 366.7 284 72.5
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.6e-99 365.9 284 72.5
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.6e-99 365.9 275 72.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.5e-99 365.2 276 74.3
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 4.5e-99 365.2 284 71.8
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.5e-99 365.2 271 72.7
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-98 363.2 271 72.7
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-98 363.2 271 72.7
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.2e-98 362.8 281 73.0
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 2.2e-98 362.8 275 73.5
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 2.9e-98 362.5 278 74.8
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.0e-98 361.7 273 72.5
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 5.0e-98 361.7 232 80.6
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 6.5e-98 361.3 277 71.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 6.5e-98 361.3 271 73.4
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 8.5e-98 360.9 272 72.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.4e-97 360.1 272 72.1
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.4e-97 360.1 273 72.2
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.5e-97 359.4 275 74.5
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 4.2e-97 358.6 248 79.4
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.2e-96 357.1 272 71.3
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.1e-96 356.3 281 73.7
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.7e-96 355.9 272 71.3
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.7e-96 355.9 272 71.3
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 3.6e-96 355.5 272 71.3
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 3.6e-96 355.5 272 71.3
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 3.6e-96 355.5 284 71.5
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 7.9e-96 354.4 276 71.4
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.0e-95 354.0 271 72.3
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-95 353.6 272 71.7
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-95 353.6 272 71.7
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-95 353.6 272 71.7
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-95 353.6 272 71.7
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.4e-95 353.6 272 71.7
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.4e-95 353.6 272 71.7
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.4e-95 353.6 251 76.5
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.8e-95 353.2 274 71.9
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.8e-95 353.2 272 71.0
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.8e-95 353.2 272 72.8
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.3e-95 352.8 277 71.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 3.0e-95 352.4 278 71.2
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 5.1e-95 351.7 292 70.5
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.7e-95 351.3 272 71.0
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 8.8e-95 350.9 274 70.8
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 3.3e-94 349.0 205 85.9
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.4e-92 343.6 199 87.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 5.3e-92 341.7 268 70.5
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.9e-92 341.3 241 75.5
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 6.9e-92 341.3 277 69.3
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.5e-89 332.8 195 89.2
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.5e-89 332.8 195 85.6
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.3e-87 326.2 194 84.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.1e-84 317.4 252 67.9
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 3.1e-84 315.8 197 78.7
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 5.3e-84 315.1 283 62.5
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.4e-79 300.4 257 60.3
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.3e-76 288.5 239 68.6
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.5e-75 285.8 183 81.4
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 6.3e-69 265.0 193 74.6
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.5e-62 241.5 195 72.8
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 9.8e-62 241.1 163 79.1
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.8e-60 236.9 271 54.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 4.5e-59 232.3 134 88.8
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 8.6e-58 228.0 162 69.1
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.9e-57 226.9 163 68.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 6.4e-45 185.3 231 54.5
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.6e-40 169.5 155 67.1
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.5e-38 164.1 121 70.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.2e-36 154.8 243 42.4
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.2e-36 154.8 243 42.4
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.7e-35 153.3 96 81.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 5.2e-23 112.5 113 61.1
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.9e-20 104.0 79 72.2
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 6.0e-11 72.4 190 32.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 8.7e-10 68.6 172 31.4
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.6e-08 63.2 39 74.4
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.3e-07 59.3 69 50.7
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.0e-06 57.4 60 43.3


User provided reference genes

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