Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.7e-91 338.6 163 100.0
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.9e-77 291.2 152 92.1
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.8e-61 238.4 152 78.3
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 4.7e-59 231.5 152 73.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 4.7e-59 231.5 151 74.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.1e-55 220.3 153 69.9
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 6.5e-53 211.1 157 67.5
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.4e-50 203.4 153 65.4
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.1e-49 200.3 153 66.7
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.7e-48 196.4 153 66.0
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.2e-48 196.1 153 63.4
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 3.8e-45 185.3 157 59.2
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 8.5e-45 184.1 157 58.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 6.8e-42 174.5 157 54.1
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 4.4e-33 145.2 158 45.6
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.3e-32 143.7 158 44.9
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.7e-32 143.3 158 50.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.8e-32 141.7 157 46.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 7.0e-31 137.9 158 46.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.5e-30 135.6 158 45.6
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.5e-30 135.6 158 45.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.5e-30 135.6 158 45.6
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.3e-29 132.9 162 47.5
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.1e-28 130.6 158 46.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.5e-28 130.2 159 45.9
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 5.5e-28 128.3 158 46.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.1e-27 126.3 156 47.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.8e-27 125.9 163 44.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.7e-27 125.2 162 48.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.7e-27 125.2 158 44.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 8.0e-27 124.4 158 44.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.8e-26 121.3 158 44.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.5e-25 120.2 158 43.0
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.6e-25 119.4 155 45.2
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 4.4e-25 118.6 155 45.2
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.3e-24 117.1 156 42.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.8e-24 115.9 164 43.3
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.3e-24 114.8 160 41.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.3e-24 114.4 158 41.8
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.3e-24 114.4 160 40.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.1e-23 114.0 156 41.7
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.8e-23 113.2 156 42.3
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.8e-23 113.2 158 41.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.2e-23 112.5 157 40.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.1e-23 112.1 163 42.9
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 9.2e-23 110.9 158 41.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.2e-22 110.5 162 40.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-22 110.2 162 42.6
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.7e-22 109.4 158 42.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.7e-22 109.4 161 39.8
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.5e-22 109.0 164 42.7
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 5.9e-22 108.2 162 38.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 7.8e-22 107.8 113 50.4
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 7.8e-22 107.8 161 39.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.0e-21 107.5 160 41.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.3e-21 107.1 163 43.6
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.3e-21 107.1 162 41.4
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.7e-21 106.7 162 41.4
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.9e-21 105.5 162 40.1
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.9e-21 105.5 158 41.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 5.0e-21 105.1 161 40.4
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 8.6e-21 104.4 162 39.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.1e-20 104.0 161 39.1
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.9e-20 103.2 164 42.1
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 7.3e-20 101.3 137 43.8
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 9.5e-20 100.9 162 39.5
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-19 100.1 163 38.0
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.1e-19 99.8 145 40.0
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.6e-19 99.0 122 48.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 4.7e-19 98.6 155 38.7
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 6.1e-19 98.2 157 36.3
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.0e-18 97.4 166 35.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.3e-18 96.3 162 37.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 3.1e-18 95.9 162 37.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-18 95.5 163 36.8
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 5.2e-18 95.1 151 39.1
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 6.8e-18 94.7 149 38.9
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-18 94.4 157 38.9
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.5e-17 93.6 158 39.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.6e-17 92.8 161 37.3
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.4e-17 92.0 162 37.7
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.8e-17 91.7 162 36.4
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 5.8e-17 91.7 160 38.8
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 5.8e-17 91.7 159 39.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 7.5e-17 91.3 161 35.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-17 90.9 163 35.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.3e-16 90.5 163 37.4
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.7e-16 90.1 130 43.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.2e-16 89.7 90 52.2
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.9e-16 89.4 161 36.0
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.1e-15 87.4 161 37.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.1e-15 87.4 162 33.3
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.9e-15 86.7 127 38.6
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.9e-15 86.7 160 36.2
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.9e-15 86.7 161 34.2
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 5.4e-15 85.1 152 38.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.0e-15 84.7 152 36.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 7.0e-15 84.7 161 34.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 9.2e-15 84.3 152 37.5
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 9.2e-15 84.3 161 36.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.2e-15 84.3 159 35.8
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.6e-14 83.6 162 36.4
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-14 83.2 151 37.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.0e-14 83.2 151 37.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 2.7e-14 82.8 151 37.7
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 3.5e-14 82.4 151 37.1
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.5e-14 82.4 153 34.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-13 80.5 152 34.2
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.3e-13 80.5 152 38.2
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.3e-13 80.5 151 36.4
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 1.3e-13 80.5 58 58.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-13 80.5 157 36.3
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.7e-13 80.1 152 36.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.7e-13 80.1 153 35.3
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.3e-13 79.7 152 36.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.9e-13 79.0 152 36.2
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 5.0e-13 78.6 85 51.8
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 5.0e-13 78.6 152 38.2
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.1e-12 77.4 198 30.8
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-12 77.0 151 35.1
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.9e-12 76.6 152 35.5
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.3e-12 75.9 152 38.2
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 3.3e-12 75.9 154 37.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 4.3e-12 75.5 152 35.5
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 4.3e-12 75.5 152 35.5
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.2e-11 73.9 159 34.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 6.2e-11 71.6 159 32.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.2e-09 67.4 156 30.8
arahy.Tifrunner.gnm1.ann1.FQ0JYV Arachis hypogaea HOM05D028796 ORTHO05D004224 1.5e-09 67.0 130 34.6
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 5.8e-09 65.1 89 39.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.2e-08 63.2 82 47.6
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.7e-08 62.4 78 43.6
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-07 60.8 66 50.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.4e-07 60.5 84 42.9


User provided reference genes

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