Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 6.5e-63 243.8 117 100.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.8e-58 228.4 117 92.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.2e-56 223.0 115 92.2
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.6e-53 211.5 115 86.1
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.5e-51 206.1 117 82.9
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 7.0e-49 197.2 119 78.2
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 3.5e-48 194.9 119 78.2
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.5e-46 189.5 117 79.5
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.2e-45 186.4 117 76.1
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.8e-44 182.6 117 69.2
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.3e-44 182.2 118 76.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.7e-42 176.0 118 66.9
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 2.2e-42 175.6 117 67.5
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.7e-42 174.9 117 67.5
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.1e-41 173.3 117 68.4
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.4e-41 172.9 117 65.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.4e-41 172.2 118 66.9
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 4.1e-41 171.4 117 65.8
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 7.0e-41 170.6 117 67.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 5.9e-40 167.5 117 65.8
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.0e-39 166.8 117 65.8
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.0e-39 166.8 116 62.9
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 8.0e-37 157.1 120 63.3
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.0e-36 156.8 117 61.5
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.0e-36 156.8 121 62.8
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.3e-36 155.6 121 62.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.0e-36 155.2 121 62.8
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 5.2e-36 154.5 120 61.7
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 5.2e-36 154.5 120 61.7
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 5.2e-36 154.5 120 61.7
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 5.2e-36 154.5 120 61.7
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 6.8e-36 154.1 120 61.7
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 6.8e-36 154.1 120 61.7
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.5e-35 152.9 120 60.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.5e-35 152.9 120 61.7
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.5e-35 152.9 125 57.6
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.0e-35 152.5 120 60.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 2.6e-35 152.1 120 60.0
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 3.4e-35 151.8 121 60.3
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 3.4e-35 151.8 120 60.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 3.4e-35 151.8 120 60.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 3.4e-35 151.8 120 60.0
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.4e-35 151.8 120 61.7
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.4e-35 151.4 120 60.8
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 9.8e-35 150.2 121 58.7
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.3e-34 149.8 121 62.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.7e-34 149.4 117 59.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 2.2e-34 149.1 120 58.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 3.7e-34 148.3 120 59.2
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.8e-33 146.0 117 57.3
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.1e-33 145.2 124 54.0
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.1e-33 145.2 124 54.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 4.1e-33 144.8 120 57.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 7.0e-33 144.1 118 55.9
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 9.2e-33 143.7 124 53.2
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.6e-32 142.9 118 55.9
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.0e-32 142.5 120 57.5
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 2.0e-32 142.5 120 56.7
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 2.0e-32 142.5 124 51.6
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 4.5e-32 141.4 112 59.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 4.5e-32 141.4 115 57.4
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 3.8e-31 138.3 118 55.1
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 5.0e-31 137.9 120 60.0
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.0e-31 137.9 118 55.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.6e-31 137.5 123 50.4
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 8.6e-31 137.1 115 57.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.5e-30 136.3 120 55.0
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.5e-30 136.3 125 52.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.9e-30 136.0 125 53.6
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 3.3e-30 135.2 118 53.4
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 54.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 3.3e-30 135.2 120 54.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.3e-30 134.8 121 54.5
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 4.3e-30 134.8 120 55.0
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 4.3e-30 134.8 120 55.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 5.6e-30 134.4 120 54.2
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 9.5e-30 133.7 122 54.1
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 9.5e-30 133.7 120 54.2
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.2e-29 133.3 122 54.1
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 6.1e-29 131.0 120 52.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 6.1e-29 131.0 118 53.4
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 8.0e-29 130.6 121 55.4
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 53.3
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 53.3
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.0e-28 130.2 120 53.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.8e-28 129.4 125 49.6
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 3.0e-28 128.6 125 49.6
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 8.9e-28 127.1 117 53.8
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.6e-27 125.6 118 49.2
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.6e-27 125.6 118 50.0
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 5.8e-27 124.4 116 50.9
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 4.9e-26 121.3 111 50.5
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 8.3e-26 120.6 116 50.0
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.9e-25 119.4 118 50.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 5.4e-25 117.9 112 49.1
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.6e-24 116.3 119 47.1
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 3.5e-24 115.2 96 54.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 4.6e-24 114.8 107 52.3
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.0e-23 113.6 124 45.2
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.3e-23 113.2 94 54.3
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.7e-23 112.8 111 45.9
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.0e-23 111.3 126 44.4
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 6.6e-23 110.9 79 63.3
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.8e-21 105.5 103 51.5
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.3e-20 102.4 53 86.8
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 8.9e-20 100.5 65 73.8
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.4e-19 98.6 77 59.7
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 5.8e-19 97.8 65 72.3
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 9.8e-19 97.1 122 41.0
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.7e-18 96.3 69 66.7
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 2.2e-18 95.9 69 66.7
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.3e-18 94.0 68 64.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 8.3e-18 94.0 58 74.1
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.1e-17 93.6 69 65.2
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.1e-17 93.6 154 32.5
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.7e-16 89.0 78 50.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.7e-16 89.0 69 56.5
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 3.5e-16 88.6 89 47.2
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 4.6e-16 88.2 106 39.6
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.7e-15 86.3 62 62.9
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 1.9e-14 82.8 55 67.3
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 3.3e-14 82.0 93 40.9
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 5.6e-14 81.3 54 61.1
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.6e-13 79.7 87 49.4
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.6e-13 79.7 122 32.8
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.8e-12 74.3 76 47.4
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.6e-11 72.4 53 62.3
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 7.5e-11 70.9 40 72.5
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 9.9e-11 70.5 86 41.9
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.7e-10 69.7 108 35.2
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 8.3e-10 67.4 128 31.2
arahy.Tifrunner.gnm1.ann1.46RTPJ Arachis hypogaea HOM05D005168 ORTHO05D006358 5.4e-09 64.7 42 66.7
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.2e-08 63.5 122 36.9
Glyma.20G021400 Glycine max HOM05D001329 ORTHO05D006358 2.7e-08 62.4 43 65.1
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 7.8e-08 60.8 118 33.9
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 7.8e-08 60.8 109 33.0
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 1.0e-07 60.5 55 50.9
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 1.0e-07 60.5 85 36.5
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.0e-07 60.5 122 35.2
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 2.3e-07 59.3 114 31.6
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.3e-07 59.3 49 53.1
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 3.0e-07 58.9 122 32.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 5.1e-07 58.2 122 32.0
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 5.1e-07 58.2 39 53.8
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 6.6e-07 57.8 118 31.4
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 6.6e-07 57.8 124 34.7
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 6.6e-07 57.8 114 30.7
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.6e-07 57.4 124 33.1
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 8.6e-07 57.4 113 35.4
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 8.6e-07 57.4 124 33.9
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.5e-06 56.6 117 32.5
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.5e-06 56.6 122 32.8
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 1.5e-06 56.6 77 37.7
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.5e-06 56.6 122 30.3
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.9e-06 56.2 118 26.3
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.9e-06 56.2 49 51.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 1.9e-06 56.2 122 32.0
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.9e-06 56.2 115 31.3
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.9e-06 56.2 122 32.8
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.5e-06 55.8 113 31.9
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.5e-06 55.8 122 32.8
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 2.5e-06 55.8 122 32.8
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 4.3e-06 55.1 109 26.6
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 4.3e-06 55.1 69 39.1
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 4.3e-06 55.1 119 30.3
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 4.3e-06 55.1 111 32.4
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 5.6e-06 54.7 122 32.8
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 7.3e-06 54.3 109 26.6
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 9.5e-06 53.9 109 26.6
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 9.5e-06 53.9 122 32.0
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 9.5e-06 53.9 115 32.2


User provided reference genes

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