Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 9.1e-113 410.2 202 100.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 3.2e-110 401.7 202 98.0
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 6.6e-71 271.2 155 91.0
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 3.1e-68 262.3 155 87.7
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 2.9e-66 255.8 154 87.7
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.2e-64 250.4 202 67.3
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 6.6e-63 244.6 155 83.9
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.3e-60 236.1 155 79.4
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 2.3e-60 236.1 155 79.4
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 6.8e-60 234.6 155 80.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 6.8e-60 234.6 155 79.4
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.2e-59 233.8 155 80.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 7.5e-59 231.1 155 78.1
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 7.5e-59 231.1 155 78.1
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.2e-58 229.6 155 78.1
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 7.1e-57 224.6 155 74.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.7e-56 222.6 155 76.8
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.0e-55 220.7 155 72.9
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.3e-54 214.5 155 70.3
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.1e-53 213.0 155 71.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 3.6e-53 212.2 155 67.7
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 4.7e-53 211.8 155 67.1
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 6.2e-53 211.5 155 70.3
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.1e-52 210.7 155 71.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.1e-52 210.7 155 73.5
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.3e-52 209.5 155 69.7
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.1e-52 209.1 155 70.3
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 4.0e-52 208.8 155 67.1
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 5.2e-52 208.4 155 69.7
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 8.9e-52 207.6 155 69.0
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 8.9e-52 207.6 155 69.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.6e-51 206.1 155 66.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 3.4e-51 205.7 155 68.4
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.4e-51 205.3 151 71.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 4.4e-51 205.3 155 72.3
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.4e-51 205.3 155 68.4
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 5.8e-51 204.9 151 70.2
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.8e-51 204.9 155 69.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 5.8e-51 204.9 155 69.0
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.6e-51 204.5 151 70.2
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.6e-51 204.5 151 70.2
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 7.6e-51 204.5 155 67.1
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.3e-50 203.8 155 68.4
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.7e-50 203.4 151 69.5
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.7e-50 203.4 155 67.1
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.7e-50 203.4 155 67.1
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-50 203.4 155 68.4
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.2e-50 203.0 149 69.8
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 2.9e-50 202.6 155 64.5
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.9e-50 202.6 155 67.7
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 3.7e-50 202.2 151 68.9
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 4.9e-50 201.8 149 65.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 6.4e-50 201.4 154 66.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.1e-49 200.7 155 67.1
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.2e-49 199.1 151 68.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.2e-49 199.1 151 69.5
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 3.2e-49 199.1 151 68.2
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 4.1e-49 198.7 155 67.1
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 9.2e-49 197.6 155 66.5
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 9.2e-49 197.6 155 65.8
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.6e-48 196.8 155 63.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.6e-48 196.8 155 65.8
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 7.8e-48 194.5 151 68.9
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 7.8e-48 194.5 151 68.2
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.0e-47 194.1 155 63.2
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.7e-47 193.4 149 65.1
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 3.9e-47 192.2 155 63.2
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.9e-47 192.2 155 62.6
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 5.1e-47 191.8 151 66.2
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 5.1e-47 191.8 155 63.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 6.6e-47 191.4 155 63.9
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 8.6e-47 191.0 155 64.5
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-46 190.7 149 64.4
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.9e-46 189.9 150 62.7
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.9e-46 189.9 155 63.9
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.5e-46 189.5 151 62.9
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.3e-46 188.7 155 63.2
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 4.3e-46 188.7 149 64.4
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.6e-46 188.3 155 63.9
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 5.6e-46 188.3 155 63.9
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.6e-45 186.8 155 65.2
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-45 186.8 155 62.6
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.8e-45 186.0 155 61.3
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 4.7e-45 185.3 155 59.4
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 8.1e-45 184.5 155 59.4
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 8.1e-45 184.5 151 62.9
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.1e-45 184.5 155 60.6
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 8.1e-45 184.5 155 61.3
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.1e-44 184.1 155 62.6
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-44 184.1 155 61.3
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-44 183.7 155 58.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.1e-44 182.6 155 60.0
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.1e-44 182.6 155 60.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.0e-44 182.2 155 60.6
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 5.2e-44 181.8 151 64.9
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 5.2e-44 181.8 155 58.1
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 5.2e-44 181.8 155 58.1
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 5.2e-44 181.8 155 58.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 5.2e-44 181.8 154 58.4
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.0e-43 179.9 157 58.6
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 2.0e-43 179.9 145 63.4
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.4e-43 179.1 155 60.6
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 3.8e-42 175.6 151 58.3
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 4.9e-42 175.3 155 55.5
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.1e-41 174.1 155 56.8
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-41 174.1 154 57.1
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.4e-41 172.9 151 57.6
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 4.2e-41 172.2 154 55.2
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 5.4e-41 171.8 159 56.6
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.1e-40 169.9 127 69.3
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.7e-39 166.8 151 57.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.0e-39 166.0 159 54.1
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 3.0e-39 166.0 232 44.8
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.1e-39 165.2 172 53.5
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 8.7e-39 164.5 150 54.7
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.5e-38 162.9 145 55.9
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 2.8e-37 159.5 155 56.1
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 6.2e-37 158.3 152 53.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.1e-36 156.0 148 52.7
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 3.1e-36 156.0 175 48.0
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 6.0e-32 141.7 92 81.5
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 6.0e-32 141.7 92 81.5
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 6.0e-32 141.7 92 81.5
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.1e-30 137.5 158 48.1
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 9.6e-30 134.4 153 47.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.1e-29 133.3 153 49.7
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.8e-29 132.9 250 35.6
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 4.8e-29 132.1 91 74.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 4.5e-27 125.6 153 45.8
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.6e-27 124.8 92 69.6
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.9e-26 122.9 92 72.8
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 3.8e-26 122.5 139 46.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.4e-25 120.6 152 42.8
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 2.4e-25 119.8 92 70.7
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.2e-25 119.4 157 43.3
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.2e-25 119.4 87 70.1
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.1e-25 118.2 149 47.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 2.1e-24 116.7 158 43.0
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 6.2e-21 105.1 90 56.7
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.0e-20 102.4 155 34.8
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 6.5e-18 95.1 64 71.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.2e-17 92.8 163 35.0
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.6e-16 90.5 162 35.2
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 4.6e-16 89.0 99 45.5
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 3.0e-15 86.3 57 71.9
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.0e-15 86.3 57 71.9
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.9e-14 83.6 61 73.8
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.1e-12 76.3 59 72.9
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 5.3e-12 75.5 112 42.9
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.2e-11 74.3 53 67.9
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 1.5e-11 73.9 56 64.3
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.5e-09 66.6 59 66.1
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-08 64.3 51 54.9
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 4.6e-08 62.4 48 70.8
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.8e-07 60.5 147 29.3
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.8e-07 60.5 47 55.3
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.0e-07 59.7 67 47.8


User provided reference genes

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