Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g068200 Pisum sativum HOM05D002009 ORTHO05D005728 4.5e-106 387.9 188 100.0
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 2.2e-100 369.0 187 94.7
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 1.1e-93 346.7 187 86.6
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 2.0e-93 345.9 187 87.7
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 1.7e-92 342.8 187 86.6
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 8.2e-92 340.5 187 86.1
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 6.9e-91 337.4 187 86.1
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 1.5e-90 336.3 187 85.6
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 2.0e-90 335.9 187 84.0
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 3.4e-90 335.1 187 82.9
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 4.5e-90 334.7 187 82.4
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 5.9e-90 334.3 187 82.4
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 5.9e-90 334.3 187 82.4
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 7.7e-90 334.0 187 85.0
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 1.3e-89 333.2 187 83.4
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 3.8e-89 331.6 187 81.8
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 8.5e-89 330.5 187 80.2
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 1.4e-88 329.7 187 81.3
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 1.4e-88 329.7 187 81.3
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 2.5e-88 328.9 187 80.2
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 7.2e-88 327.4 187 81.3
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 7.2e-88 327.4 187 80.2
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 9.4e-88 327.0 187 80.7
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 9.4e-88 327.0 187 79.7
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 2.1e-87 325.9 187 79.7
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 2.7e-87 325.5 187 81.3
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 4.7e-87 324.7 187 80.2
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 4.7e-87 324.7 187 80.7
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 6.1e-87 324.3 187 81.3
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 7.9e-87 323.9 187 80.7
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 1.0e-86 323.6 187 80.2
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 1.4e-86 323.2 187 80.2
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 1.4e-86 323.2 187 80.2
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 1.4e-86 323.2 187 80.7
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 1.8e-86 322.8 187 83.4
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 1.8e-86 322.8 187 79.7
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 2.3e-86 322.4 187 78.6
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 5.2e-86 321.2 187 80.2
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 5.2e-86 321.2 187 79.1
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 5.2e-86 321.2 187 79.1
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 5.2e-86 321.2 187 78.6
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 6.7e-86 320.9 187 80.2
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 1.1e-85 320.1 187 79.1
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 1.1e-85 320.1 187 79.1
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 4.4e-85 318.2 188 80.3
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 7.4e-85 317.4 187 77.5
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 9.7e-85 317.0 187 77.5
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 9.7e-85 317.0 187 78.1
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 9.7e-85 317.0 187 77.0
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 1.3e-84 316.6 187 79.1
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 4.8e-84 314.7 187 77.0
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 6.3e-84 314.3 187 77.5
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 1.1e-83 313.5 187 78.1
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 1.1e-83 313.5 187 77.5
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 2.4e-83 312.4 187 78.6
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 3.1e-83 312.0 187 77.0
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 5.3e-83 311.2 204 74.0
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 7.0e-83 310.8 187 77.0
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 7.0e-83 310.8 187 77.0
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 7.0e-83 310.8 187 77.5
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 2.0e-82 309.3 187 76.5
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 2.6e-82 308.9 187 77.0
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 2.6e-82 308.9 187 77.0
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 2.6e-82 308.9 187 77.0
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 2.6e-82 308.9 187 77.0
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 3.5e-82 308.5 187 77.0
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 1.0e-81 307.0 187 76.5
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 1.3e-81 306.6 187 76.5
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 1.7e-81 306.2 187 77.5
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 1.7e-81 306.2 187 77.5
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 2.2e-81 305.8 187 77.0
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 8.5e-81 303.9 187 73.8
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 1.1e-80 303.5 187 73.3
CDE06G1389 Ceratophyllum demersum HOM05D002009 ORTHO05D005728 1.5e-80 303.1 187 74.9
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 3.2e-80 302.0 187 72.7
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 5.5e-80 301.2 187 73.8
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 7.2e-80 300.8 189 75.7
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 9.4e-80 300.4 187 75.9
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 9.4e-80 300.4 187 75.9
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 1.2e-79 300.1 187 77.0
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 2.7e-79 298.9 187 75.9
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 6.1e-79 297.7 187 75.9
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 8.0e-79 297.4 187 74.9
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 4.0e-78 295.0 188 75.5
SEGI_14345 Sequoiadendron giganteum HOM05D002009 ORTHO05D005728 1.2e-77 293.5 187 73.3
BcaC01g02652 Brassica carinata HOM05D002009 ORTHO05D005728 1.5e-77 293.1 180 75.0
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 2.6e-77 292.4 187 71.1
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 9.7e-77 290.4 187 71.7
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 1.3e-76 290.0 176 75.0
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 2.2e-76 289.3 187 77.0
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 2.8e-76 288.9 188 72.3
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 1.4e-75 286.6 188 71.8
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 1.8e-75 286.2 189 72.0
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 7.2e-72 274.2 187 66.3
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 1.6e-71 273.1 186 67.2
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 2.0e-69 266.2 184 66.3
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 3.4e-69 265.4 187 63.6
DCAR_001197 Daucus carota HOM05D002009 ORTHO05D005728 4.5e-66 255.0 187 62.6
Migut.B01032 Erythranthe guttata HOM05D002009 ORTHO05D005728 1.6e-63 246.5 165 70.3
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 1.6e-63 246.5 189 62.4
Aqoxy2G03871 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 5.4e-59 231.5 177 62.7
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 2.7e-58 229.2 120 85.8
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 5.0e-57 224.9 187 55.6
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 1.2e-55 220.3 120 84.2
CSS0023852 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 2.8e-55 219.2 165 64.8
Nitab4.5_0003690g0040 Nicotiana tabacum HOM05D002009 ORTHO05D005728 1.2e-50 203.8 107 84.1
Nitab4.5_0000062g0490 Nicotiana tabacum HOM05D002009 ORTHO05D005728 5.2e-46 188.3 107 79.4
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 1.5e-45 186.8 110 81.8
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 1.2e-42 177.2 194 46.4
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 1.3e-41 173.7 180 46.7
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 1.2e-39 167.2 164 50.0
AL3G45200 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 3.1e-30 136.0 133 55.6
MD15G1136200 Malus domestica HOM05D002009 ORTHO05D030069 9.2e-27 124.4 175 42.9
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 6.0e-26 121.7 165 40.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-20 103.2 52 88.5
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-15 87.0 44 88.6
AL4G19520 Arabidopsis lyrata HOM05D002850 ORTHO05D003285 4.0e-14 82.4 44 79.5
FAN19G2450 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.2e-10 70.9 39 76.9
FAN26G3211 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.2e-10 70.9 39 76.9
FAN28G0184 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.2e-10 70.9 39 76.9
Pp3c17_18800 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.1e-06 57.8 137 28.5
SMO232G0106 Selaginella moellendorffii HOM05D002009 ORTHO05D030069 1.8e-06 57.0 40 65.0


User provided reference genes

Program Settings