Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 6.8e-303 1043.1 497 100.0
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 6.0e-275 950.3 500 89.4
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.5e-273 945.7 499 90.0
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 3.4e-254 881.3 501 82.8
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 7.9e-251 870.2 486 83.7
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 8.7e-250 866.7 502 81.1
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 6.2e-248 860.5 497 82.9
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 1.4e-247 859.4 502 79.9
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 3.8e-245 851.3 496 80.0
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 3.0e-242 841.6 496 80.0
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 7.6e-238 827.0 496 77.8
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 3.5e-235 818.1 498 77.5
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 2.3e-234 815.5 488 78.3
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 9.7e-233 810.1 492 77.0
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.6e-232 809.3 495 77.2
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 2.2e-232 808.9 485 77.7
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.8e-232 808.5 492 77.0
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 4.1e-231 804.7 492 76.0
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 6.9e-231 803.9 495 76.4
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 2.6e-230 802.0 496 76.2
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 6.5e-229 797.3 499 74.7
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 8.5e-229 797.0 486 75.3
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 8.5e-229 797.0 497 75.1
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 7.2e-228 793.9 488 74.8
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 7.2e-228 793.9 479 74.9
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 2.1e-227 792.3 495 75.6
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 7.9e-227 790.4 500 74.8
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 1.4e-226 789.6 501 73.7
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.4e-226 789.6 488 76.4
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 3.0e-226 788.5 487 76.6
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 2.0e-225 785.8 481 76.5
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 4.3e-225 784.6 488 75.8
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 7.4e-225 783.9 489 75.5
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.3e-224 783.1 479 77.2
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 1.8e-223 779.2 523 70.9
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 1.5e-222 776.2 480 75.6
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.5e-222 776.2 486 74.1
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 2.0e-222 775.8 481 75.3
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 4.5e-222 774.6 481 75.3
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.7e-221 772.7 487 73.3
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.1e-220 770.0 515 71.1
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 3.2e-220 768.5 504 72.0
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 4.2e-220 768.1 484 74.6
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 4.2e-220 768.1 492 73.6
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 5.5e-220 767.7 487 73.5
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 7.2e-220 767.3 482 74.7
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 3.6e-219 765.0 458 77.7
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 4.7e-219 764.6 486 74.5
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 4.7e-219 764.6 489 73.6
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 6.1e-219 764.2 490 73.5
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 1.0e-218 763.5 497 72.6
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.4e-218 763.1 492 74.6
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 6.7e-218 760.8 493 72.4
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 2.0e-217 759.2 489 72.8
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 7.4e-217 757.3 482 72.8
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 9.7e-217 756.9 522 70.9
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.8e-216 755.4 484 72.9
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 4.8e-216 754.6 488 72.5
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 6.3e-216 754.2 482 73.2
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 8.2e-216 753.8 498 69.7
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 9.1e-215 750.4 485 73.4
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 2.0e-214 749.2 500 71.2
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 4.5e-214 748.0 487 72.7
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 5.9e-214 747.7 547 66.9
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 7.2e-212 740.7 525 66.9
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 1.6e-211 739.6 529 68.4
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.6e-211 738.4 492 71.7
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 2.3e-210 735.7 493 71.4
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 6.7e-210 734.2 484 72.7
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 7.5e-209 730.7 502 69.9
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 3.1e-207 725.3 469 71.0
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 5.3e-207 724.5 485 69.3
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 5.9e-206 721.1 472 73.1
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 3.2e-204 715.3 481 70.1
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 8.0e-203 710.7 569 61.0
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.0e-202 710.3 522 66.9
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 8.3e-200 700.7 493 68.4
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 2.0e-198 696.0 439 75.6
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.2e-196 688.7 455 70.5
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 1.0e-194 683.7 521 65.3
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.8e-194 682.9 491 66.6
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 5.7e-193 677.9 465 67.1
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.7e-190 669.1 494 67.2
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 4.3e-188 661.8 506 64.2
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 7.3e-188 661.0 505 64.2
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 4.4e-185 651.7 497 65.0
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 1.7e-184 649.8 492 62.8
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 6.4e-184 647.9 394 77.9
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.6e-182 643.3 475 63.4
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 3.5e-182 642.1 472 62.9
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 4.6e-182 641.7 471 63.3
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 6.0e-174 614.8 484 64.3
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 6.6e-173 611.3 390 74.9
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 8.6e-173 610.9 481 64.2
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 1.2e-166 590.5 382 74.3
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 7.8e-166 587.8 391 71.4
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 3.6e-163 578.9 388 71.9
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.3e-160 570.5 469 59.3
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 1.7e-160 570.1 385 69.9
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.5e-153 547.0 393 66.4
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 4.4e-153 545.4 468 58.1
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 8.7e-149 531.2 326 76.1
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 2.0e-145 520.0 357 68.1
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 3.0e-141 506.1 480 55.4
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 4.2e-127 459.1 355 63.4
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 3.5e-126 456.1 467 50.5
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 4.6e-126 455.7 387 58.7
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.3e-125 453.4 247 83.0
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 4.8e-123 445.7 288 70.8
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 4.5e-121 439.1 439 49.7
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.2e-118 431.0 281 70.5
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 4.3e-116 422.5 367 57.8
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.1e-110 403.7 366 55.7
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 1.1e-98 364.8 187 85.6
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 6.3e-75 285.8 164 81.7
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 1.8e-69 267.7 505 37.0
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.3e-48 198.4 110 80.0
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 5.2e-45 186.4 94 81.9
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 9.9e-36 155.6 93 74.2
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.3e-32 145.2 81 81.5
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 2.5e-31 141.0 69 85.5
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 1.6e-30 138.3 131 55.0
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.0e-29 133.7 106 62.3
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 6.9e-29 132.9 213 37.1
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.9e-23 114.8 94 59.6
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 4.8e-22 110.2 181 36.5
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 6.9e-21 106.3 70 68.6
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 3.9e-16 90.5 54 81.5
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 2.5e-10 71.2 51 64.7


User provided reference genes

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