Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 0.0e+00 1201.0 778 100.0
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.1e-290 1002.3 779 85.0
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.2e-285 986.5 781 84.3
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 4.1e-278 961.4 780 79.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.9e-236 822.4 778 73.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 8.6e-236 820.8 777 74.0
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.3e-228 797.0 778 71.1
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 3.3e-227 792.3 780 72.7
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 5.6e-227 791.6 785 72.7
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-225 787.3 808 71.4
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.3e-225 786.2 778 73.8
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.2e-224 783.9 778 72.4
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.6e-218 762.3 777 70.8
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 2.3e-188 663.3 743 60.7
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 9.6e-187 657.9 782 60.1
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.8e-186 656.4 785 63.7
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 8.1e-186 654.8 786 62.8
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.0e-184 650.2 779 63.7
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 6.4e-183 645.2 785 62.8
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 3.5e-181 639.4 785 60.0
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.8e-180 637.1 788 62.2
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.8e-178 629.8 784 60.2
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.2e-176 624.4 778 64.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 4.9e-175 619.0 792 59.5
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.0e-173 612.1 788 59.3
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.5e-171 607.4 791 53.4
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.9e-171 607.1 782 60.6
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 4.3e-171 605.9 780 61.4
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 5.7e-171 605.5 782 61.1
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 2.2e-170 603.6 754 59.8
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 4.8e-170 602.4 793 62.8
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.4e-169 600.9 794 60.6
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.1e-169 599.4 783 58.2
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.5e-168 597.4 785 58.3
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.9e-167 593.2 790 57.8
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.5e-166 590.1 752 60.8
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 9.3e-166 588.2 803 57.5
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.3e-166 588.2 788 61.9
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.1e-165 585.5 788 61.7
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 7.9e-165 585.1 783 60.2
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.8e-164 583.9 782 61.1
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 8.8e-164 581.6 755 60.3
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.5e-163 580.9 783 57.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 2.2e-162 577.0 793 57.6
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.8e-162 576.6 794 57.7
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.1e-161 572.8 779 59.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 4.1e-161 572.8 758 59.5
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.3e-161 572.4 786 56.5
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 5.9e-160 568.9 788 59.0
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 7.7e-160 568.5 785 58.1
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 2.9e-159 566.6 795 59.6
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 1.0e-156 558.1 783 56.1
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 3.0e-156 556.6 795 58.5
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.8e-156 555.1 779 58.4
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-153 547.7 783 55.6
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.2e-152 544.7 793 60.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.0e-149 531.9 785 56.6
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.2e-148 529.3 783 55.4
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 8.8e-148 528.5 785 53.8
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 7.4e-147 525.4 770 57.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 1.3e-146 524.6 786 51.0
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.4e-145 521.2 791 59.0
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.4e-145 521.2 844 54.4
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 5.9e-144 515.8 819 51.6
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.3e-143 514.6 793 49.8
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.3e-143 514.6 791 50.3
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.2e-143 513.8 796 57.8
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 3.8e-143 513.1 800 53.4
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.5e-142 510.4 787 54.9
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.1e-141 507.3 786 51.5
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 4.7e-141 506.1 796 51.8
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 2.3e-140 503.8 795 54.5
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.3e-140 503.8 701 58.9
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.2e-140 502.7 781 51.6
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 6.7e-140 502.3 794 51.9
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.5e-139 501.1 792 50.6
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 5.7e-139 499.2 782 52.7
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.7e-138 497.7 795 53.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 4.8e-138 496.1 787 55.7
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 8.2e-138 495.4 790 52.3
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 4.1e-137 493.0 792 53.8
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 8.5e-135 485.3 793 52.7
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 4.2e-134 483.0 766 49.7
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 8.0e-133 478.8 799 48.2
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.8e-132 477.6 788 54.4
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 2.0e-131 474.2 788 54.1
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.8e-131 471.9 765 46.0
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.8e-130 470.3 788 52.9
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 6.3e-130 469.2 787 52.4
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 6.3e-130 469.2 792 51.4
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.3e-130 469.2 757 54.8
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 8.3e-130 468.8 787 53.1
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.1e-129 468.4 784 54.5
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 2.4e-129 467.2 778 53.3
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.4e-129 467.2 778 53.3
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.4e-129 467.2 778 53.3
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 4.1e-129 466.5 782 53.1
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.0e-128 464.2 777 53.9
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.7e-128 463.8 787 52.9
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 4.5e-128 463.0 783 54.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 5.9e-128 462.6 800 51.9
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.9e-126 457.6 795 52.2
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.8e-125 453.8 778 50.6
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 6.8e-124 449.1 807 51.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.8e-124 449.1 764 53.7
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.4e-123 446.8 789 53.7
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 7.0e-121 439.1 790 52.7
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 5.6e-118 429.5 796 47.7
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 9.5e-118 428.7 799 47.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.6e-112 411.4 773 45.9
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 2.7e-112 410.6 750 53.6
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.7e-111 407.9 790 46.3
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.5e-107 394.8 780 49.4
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.9e-98 363.2 726 40.6
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.3e-95 355.1 793 46.9
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 6.6e-95 352.8 588 57.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.2e-93 348.6 824 46.5
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.2e-91 342.0 829 45.5
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 6.4e-90 336.3 720 47.4
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 3.0e-87 327.4 703 44.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.8e-84 318.2 820 44.5
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.0e-84 317.0 283 62.9
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 2.5e-78 297.7 335 56.4
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.5e-67 260.4 560 47.9
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.4e-60 238.0 237 62.0
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.3e-55 222.2 774 36.2
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.9e-54 218.4 266 53.0
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.7e-54 216.1 266 52.6
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 4.6e-48 197.2 244 48.8
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-45 186.8 301 48.2
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 7.7e-43 179.9 362 45.6
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.7e-40 171.4 275 44.7
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.8e-39 168.7 160 56.2
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 5.1e-39 167.2 179 59.8
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.1e-30 139.4 127 65.4
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 2.0e-27 128.6 73 90.4
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.1e-24 118.6 71 83.1
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.8e-20 105.5 107 46.7
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 3.2e-17 94.7 88 53.4
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 5.7e-14 84.0 99 39.4
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.4e-12 79.3 92 50.0
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 9.1e-12 76.6 147 34.0
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.9e-10 71.6 115 34.8
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 8.9e-07 60.1 204 32.8
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 8.9e-07 60.1 189 32.8
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.4e-06 58.2 118 39.8


User provided reference genes

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