Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.5e-95 351.3 180 100.0
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.8e-81 305.4 192 83.3
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.1e-74 283.5 191 79.6
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 3.7e-73 278.5 184 79.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.4e-69 266.5 191 75.9
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 7.2e-69 264.2 191 75.9
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.7e-68 262.3 190 74.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.1e-68 261.2 192 72.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 7.9e-68 260.8 192 73.4
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 7.9e-68 260.8 190 74.2
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.0e-67 260.4 190 75.8
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.3e-67 260.0 190 72.6
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.1e-66 256.9 190 72.6
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.9e-66 256.1 190 73.7
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 9.7e-66 253.8 191 71.7
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 8.2e-65 250.8 185 69.2
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 3.1e-64 248.8 187 71.7
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.2e-63 246.9 189 69.3
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.5e-63 246.5 188 69.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.5e-63 246.5 183 74.9
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.8e-62 241.9 189 68.3
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 5.0e-62 241.5 183 68.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.1e-61 240.4 189 67.7
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.4e-61 240.0 190 70.5
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.5e-61 239.2 184 68.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.5e-61 239.2 187 70.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 3.2e-61 238.8 190 70.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 4.2e-61 238.4 193 66.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.2e-61 238.4 184 68.5
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 4.2e-61 238.4 180 70.6
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 4.2e-61 238.4 188 69.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.5e-61 238.0 184 68.5
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.4e-61 237.3 186 68.8
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.2e-60 236.9 189 65.6
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 2.1e-60 236.1 180 70.6
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.1e-60 236.1 189 66.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 2.1e-60 236.1 187 69.0
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.7e-60 235.7 184 67.4
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 7.9e-60 234.2 183 69.4
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.9e-60 234.2 183 69.4
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.0e-59 233.8 191 67.0
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.0e-59 233.8 188 67.0
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.0e-59 233.8 183 69.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.4e-59 233.4 182 68.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.4e-59 233.4 188 67.0
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.8e-59 233.0 189 66.1
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.8e-59 233.0 185 69.2
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.3e-59 232.6 191 65.4
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.3e-59 232.6 191 65.4
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 2.3e-59 232.6 184 65.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.0e-59 232.3 188 67.0
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.0e-59 232.3 189 65.1
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 3.9e-59 231.9 177 70.6
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 8.8e-59 230.7 182 70.9
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.5e-58 229.9 174 71.3
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.5e-58 229.9 192 65.6
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.0e-58 229.6 189 66.1
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-58 229.6 189 66.1
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-58 229.6 189 66.1
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 2.6e-58 229.2 187 67.4
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.4e-58 228.4 190 63.7
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 9.7e-58 227.3 190 66.3
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.7e-57 226.5 155 76.8
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.2e-57 226.1 180 67.8
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.8e-57 225.7 184 67.4
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 4.8e-57 224.9 157 73.9
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 6.3e-57 224.6 174 69.0
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 6.3e-57 224.6 181 67.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 8.2e-57 224.2 168 72.0
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 8.2e-57 224.2 194 63.9
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.4e-56 223.4 188 64.4
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.4e-56 223.4 154 74.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.8e-56 223.0 190 64.2
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.8e-56 223.0 191 62.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-56 222.2 154 76.0
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.1e-56 222.2 206 61.7
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.1e-56 221.9 168 71.4
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.1e-56 221.9 188 64.4
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 5.3e-56 221.5 152 78.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 5.3e-56 221.5 152 78.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 5.3e-56 221.5 152 78.3
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 5.3e-56 221.5 184 67.4
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 5.3e-56 221.5 152 78.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.9e-56 221.1 139 80.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.9e-56 221.1 139 80.6
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.9e-56 221.1 188 63.8
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 9.1e-56 220.7 152 78.3
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 9.1e-56 220.7 152 78.3
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 9.1e-56 220.7 126 85.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.5e-55 219.9 168 71.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.5e-55 219.9 168 71.4
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.0e-55 219.5 168 71.4
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-55 219.5 152 77.6
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.0e-55 219.5 178 66.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.6e-55 219.2 158 75.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 3.4e-55 218.8 151 75.5
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.9e-55 218.0 216 56.5
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.7e-55 217.6 150 75.3
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.7e-55 217.6 150 75.3
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 7.7e-55 217.6 139 79.9
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 7.7e-55 217.6 180 64.4
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.0e-54 217.2 140 80.7
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.3e-54 216.9 189 67.2
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.3e-54 216.9 180 65.0
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.7e-54 216.5 176 64.8
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.2e-54 216.1 216 58.3
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 3.8e-54 215.3 150 76.0
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 5.0e-54 214.9 193 62.2
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 6.5e-54 214.5 162 71.6
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.5e-54 214.2 188 62.2
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 7.2e-53 211.1 128 82.0
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 9.4e-53 210.7 153 73.2
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.1e-52 209.5 127 81.9
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 6.1e-52 208.0 168 66.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.4e-51 206.8 180 62.8
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.8e-51 206.5 200 59.5
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 5.2e-51 204.9 125 82.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.0e-50 203.0 169 65.1
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 3.3e-50 202.2 163 68.1
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 7.4e-50 201.1 165 66.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.8e-49 199.1 160 66.9
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.8e-49 199.1 146 74.7
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 2.8e-49 199.1 124 78.2
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-48 196.1 159 67.3
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 7.0e-48 194.5 132 75.8
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.2e-47 193.7 217 53.9
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.5e-47 192.2 172 57.6
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.5e-47 191.8 181 58.6
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.7e-46 189.9 159 64.8
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.2e-46 189.5 159 65.4
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 2.2e-46 189.5 152 67.8
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.9e-46 189.1 188 57.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.8e-46 188.7 190 58.9
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 6.5e-46 188.0 152 66.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 6.5e-46 188.0 166 57.8
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 8.5e-46 187.6 152 66.4
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 9.4e-45 184.1 172 55.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.6e-44 182.2 143 71.3
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.7e-44 181.8 158 62.7
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 4.0e-43 178.7 153 62.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-42 176.8 153 62.1
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.1e-40 169.1 149 61.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 7.0e-40 167.9 125 68.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.7e-39 166.0 159 60.4
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.5e-39 165.2 152 57.9
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.8e-38 162.2 190 50.5
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.5e-38 161.0 146 58.2
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.2e-36 157.1 124 62.9
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.6e-36 156.8 146 56.2
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.0e-35 152.5 148 55.4
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.2e-34 150.6 142 61.3
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 5.7e-34 148.3 126 60.3
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.1e-32 142.1 110 66.4
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.2e-31 140.6 130 56.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.5e-31 138.7 107 63.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 7.7e-31 137.9 97 76.3
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-29 132.5 87 77.0
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.7e-28 128.6 105 61.0
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-27 127.5 112 62.5
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.7e-25 120.2 69 87.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 5.4e-24 115.2 117 54.7
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.5e-23 112.1 68 82.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-22 110.2 68 80.9
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.5e-21 107.1 113 54.0
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.7e-18 95.1 79 60.8
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 7.5e-18 94.7 84 60.7
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.7e-17 92.4 59 72.9
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.4e-16 89.7 53 79.2
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.2e-16 89.4 56 75.0
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 4.6e-15 85.5 87 55.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 7.8e-15 84.7 87 55.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.0e-14 82.8 47 83.0
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 8.6e-14 81.3 124 37.9
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.7e-09 67.0 74 52.7
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.3e-06 57.4 37 73.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.7e-06 57.0 59 57.6
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.0e-06 56.2 59 57.6
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 8.6e-06 54.7 31 83.9


User provided reference genes

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