Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 5.5e-167 590.9 297 100.0
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 2.1e-121 439.5 265 84.9
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.8e-118 429.1 271 82.3
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 9.9e-116 420.6 264 79.5
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 3.3e-111 405.6 230 83.9
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.3e-111 405.6 230 83.9
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 4.3e-111 405.2 276 75.4
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.6e-105 385.2 226 81.4
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.7e-104 383.3 226 81.0
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 8.4e-99 364.4 193 90.2
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 7.3e-95 351.3 225 74.2
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 2.1e-94 349.7 225 73.3
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.8e-94 349.4 225 73.8
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 4.0e-93 345.5 225 72.4
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 3.4e-92 342.4 235 69.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 9.9e-92 340.9 193 85.0
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.3e-91 340.5 226 72.1
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 4.9e-91 338.6 235 68.1
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.2e-90 335.9 229 69.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.2e-90 335.5 235 68.9
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 7.1e-90 334.7 229 70.7
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 7.1e-90 334.7 236 67.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 9.3e-90 334.3 225 70.7
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.1e-89 333.2 236 67.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.5e-89 332.4 236 66.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.5e-89 332.4 223 71.3
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.6e-89 332.0 236 66.9
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.3e-88 330.5 225 69.3
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 3.0e-88 329.3 223 70.4
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.1e-88 328.6 225 69.8
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 6.7e-88 328.2 226 69.5
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.9e-87 326.6 229 68.6
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 2.5e-87 326.2 246 64.6
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 3.3e-87 325.9 225 68.9
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 3.3e-87 325.9 222 69.8
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 4.3e-87 325.5 225 69.8
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.4e-87 324.7 226 68.6
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 7.4e-87 324.7 243 65.0
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.7e-86 322.4 235 65.5
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 4.8e-86 322.0 239 65.3
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.4e-84 315.8 229 67.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.5e-84 315.5 222 67.6
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 9.9e-84 314.3 238 64.7
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.3e-83 313.9 223 66.4
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.7e-83 313.5 223 65.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 4.9e-83 312.0 222 65.8
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 6.4e-83 311.6 235 70.2
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 3.2e-82 309.3 223 65.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 4.2e-82 308.9 242 61.6
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.2e-81 307.4 223 65.0
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.2e-81 307.4 223 65.0
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.6e-81 307.0 226 63.7
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.1e-81 306.6 219 66.2
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 7.9e-81 304.7 223 65.0
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-80 303.9 226 62.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 8.7e-80 301.2 230 61.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.5e-79 299.7 248 60.9
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.3e-79 298.9 222 65.3
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.8e-78 296.2 236 60.2
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.4e-77 293.9 223 60.5
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.4e-77 293.9 258 61.2
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.3e-77 292.0 189 72.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.5e-76 288.9 236 59.3
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 4.9e-75 285.4 246 55.3
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.4e-74 283.9 244 55.3
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.4e-74 283.9 193 68.9
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.2e-74 282.7 190 71.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 5.5e-74 282.0 225 57.8
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 9.3e-74 281.2 244 55.7
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.6e-73 280.4 225 58.7
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-73 280.4 225 58.2
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.6e-73 280.4 225 58.7
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.6e-73 280.4 225 58.7
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.1e-73 280.0 225 57.8
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.1e-73 280.0 225 58.2
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.1e-73 280.0 225 57.8
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.5e-73 279.3 225 59.6
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.0e-72 277.7 225 57.3
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-72 277.7 199 66.8
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.3e-72 277.3 225 57.8
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.3e-72 277.3 225 57.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.3e-72 276.6 236 55.1
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.3e-72 276.6 225 58.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 3.0e-72 276.2 193 66.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.5e-71 273.9 199 63.8
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.1e-69 266.2 229 57.2
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 5.3e-69 265.4 173 71.7
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.5e-68 263.8 200 60.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.5e-66 255.4 241 53.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.6e-65 253.8 229 53.3
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.1e-65 251.9 225 57.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-64 251.1 225 57.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.0e-59 234.6 213 54.5
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 8.5e-59 231.5 225 50.2
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.8e-56 223.8 232 46.6
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.1e-55 221.1 231 52.4
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.8e-54 215.7 223 44.4
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.6e-52 209.9 236 48.3
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.3e-51 207.6 144 66.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 7.2e-50 201.8 502 30.3
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.1e-49 200.3 167 59.3
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-48 198.0 131 70.2
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.1e-47 194.5 132 65.9
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 4.4e-47 192.6 223 43.9
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.3e-46 188.7 241 44.8
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 6.3e-46 188.7 239 41.4
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.1e-45 186.0 156 61.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.6e-41 174.1 136 55.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.8e-38 163.3 105 70.5
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.1e-37 159.8 92 80.4
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.1e-37 159.5 101 75.2
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-37 159.1 114 68.4
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-36 157.1 103 71.8
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.5e-36 156.4 100 69.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.6e-33 147.5 94 71.3
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 2.7e-33 146.7 127 58.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.4e-32 144.4 179 47.5
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.2e-32 142.5 179 46.4
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.7e-30 137.5 119 58.0
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.6e-27 125.6 182 42.3
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.9e-26 124.0 168 34.5
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.5e-26 123.6 145 44.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 7.2e-26 122.1 133 45.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-23 114.4 85 67.1
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.5e-23 114.4 118 52.5
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.6e-20 104.4 79 68.4
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 2.2e-14 84.0 88 55.7
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-13 81.3 67 61.2
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.1e-10 71.6 55 58.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.5e-10 70.5 58 62.1
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.7e-09 66.2 51 52.9
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 1.3e-06 58.2 41 70.7


User provided reference genes

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