Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 3.4e-214 748.0 374 100.0
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.0e-150 536.2 536 56.0
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.0e-150 536.2 536 55.2
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 5.5e-140 501.5 533 52.9
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.0e-118 429.9 317 68.8
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 7.8e-118 427.9 540 46.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.8e-115 419.5 317 67.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 3.5e-110 402.5 533 44.1
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 7.8e-110 401.4 320 64.7
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 4.3e-108 395.6 207 95.2
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 6.2e-107 391.7 319 63.3
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 9.2e-95 351.3 318 60.1
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 3.0e-85 319.7 322 53.1
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.1e-84 317.8 511 38.6
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.6e-83 312.8 534 37.8
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.1e-82 311.2 534 38.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 3.1e-82 309.7 507 38.3
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-81 307.8 322 51.9
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.0e-81 307.0 317 53.0
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.4e-81 306.2 312 53.2
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.3e-80 304.3 536 35.6
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.4e-79 300.1 317 52.4
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 5.4e-79 298.9 320 51.2
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.2e-78 297.7 327 48.9
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-78 297.4 321 50.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.7e-78 296.6 534 37.1
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.5e-76 290.8 320 50.6
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.3e-76 289.7 325 50.2
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 7.4e-76 288.5 317 48.9
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 7.4e-76 288.5 319 49.2
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.1e-75 287.0 319 49.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.7e-75 286.2 314 50.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 3.7e-75 286.2 544 35.1
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 6.2e-75 285.4 326 50.0
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.1e-74 284.6 318 50.9
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.1e-74 283.1 444 41.2
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.0e-74 282.7 318 49.4
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.6e-73 280.0 533 35.3
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 5.8e-73 278.9 311 49.2
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 9.9e-73 278.1 314 49.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 9.9e-73 278.1 325 47.1
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 9.9e-73 278.1 318 48.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.3e-72 277.7 318 48.7
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.3e-72 277.7 319 47.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.4e-72 275.4 315 48.6
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.5e-71 273.5 314 49.4
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.2e-71 273.1 311 47.9
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 5.5e-71 272.3 325 48.9
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.5e-71 272.3 541 34.2
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 9.3e-71 271.6 319 46.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 9.3e-71 271.6 470 37.7
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 4.6e-70 269.2 316 47.2
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 6.0e-70 268.9 315 48.9
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.3e-69 267.7 311 46.3
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.3e-69 267.7 311 46.6
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 1.8e-69 267.3 319 47.0
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.3e-69 266.9 319 45.5
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.0e-69 266.5 316 46.5
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 3.9e-69 266.2 319 45.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.9e-68 263.8 311 46.0
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 7.4e-68 261.9 324 46.3
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-67 260.8 310 47.1
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-67 260.8 310 47.1
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.8e-67 260.0 311 44.4
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 8.2e-67 258.5 320 45.3
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.4e-66 257.7 374 42.0
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.8e-66 257.3 317 45.7
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.1e-66 256.5 312 47.8
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.4e-65 253.1 327 45.0
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 7.6e-65 251.9 316 44.3
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 7.6e-65 251.9 460 35.0
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.0e-64 251.5 320 45.0
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.9e-63 247.3 449 35.0
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.5e-63 246.9 311 45.0
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.2e-63 246.1 553 32.0
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 7.1e-63 245.4 315 43.2
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.2e-62 244.6 315 43.2
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.7e-62 243.4 545 32.5
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 4.6e-62 242.7 317 46.1
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.1e-61 239.2 545 32.1
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 6.3e-59 232.3 314 43.0
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 6.3e-59 232.3 320 41.9
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.8e-58 230.7 319 41.4
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.1e-58 229.9 324 43.5
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 6.9e-58 228.8 315 41.9
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.0e-57 227.3 536 31.7
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.9e-57 225.7 339 42.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.0e-56 222.6 338 42.3
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 8.5e-56 221.9 324 42.6
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.9e-55 220.7 294 41.5
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.3e-53 213.8 304 42.1
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 6.7e-53 212.2 341 39.0
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 6.7e-53 212.2 323 39.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.7e-51 206.5 318 38.1
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 6.3e-51 205.7 318 39.0
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.0e-48 198.4 374 36.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 6.5e-48 195.7 325 37.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.4e-47 194.5 319 39.8
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 3.2e-47 193.4 317 38.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 3.3e-44 183.3 328 37.5
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 5.3e-42 176.0 314 37.9
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 5.3e-42 176.0 314 37.3
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.6e-41 173.7 347 35.2
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 3.8e-40 169.9 314 36.0
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 3.8e-40 169.9 314 37.3
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 3.8e-40 169.9 314 37.3
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 3.8e-40 169.9 314 37.3
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 4.7e-38 162.9 248 41.9
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 7.0e-34 149.1 296 33.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 6.5e-32 142.5 382 28.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.3e-27 128.3 312 32.1
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.2e-27 127.5 353 29.7
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.3e-24 118.2 318 32.7
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-21 107.1 101 56.4
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 6.8e-21 105.9 127 44.1
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 4.4e-20 103.2 87 58.6
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 2.4e-18 97.4 105 43.8
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.6e-17 94.7 222 30.6
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 3.5e-17 93.6 67 64.2
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 5.9e-17 92.8 326 27.6
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.2e-15 86.7 272 29.0
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.5e-15 85.5 273 29.3
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 2.1e-14 84.3 327 26.9
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.8e-14 84.0 205 28.8
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 6.1e-14 82.8 199 32.2
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 8.0e-14 82.4 137 33.6
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 5.2e-13 79.7 128 33.6
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 3.4e-12 77.0 189 26.5
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.7e-11 74.7 316 25.9
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 8.3e-11 72.4 68 51.5
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 9.2e-10 68.9 58 46.6
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-09 68.6 252 24.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-08 65.1 59 47.5
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-08 64.7 65 52.3
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 2.3e-08 64.3 58 44.8
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.5e-07 61.6 54 53.7
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.1e-06 56.2 74 44.6


User provided reference genes

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