Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 2146.7 1140 100.0
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1963.7 1140 92.0
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1963.7 1140 92.0
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1810.4 1147 84.4
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1804.3 1140 84.8
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1801.9 1147 81.9
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1764.6 1142 82.4
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1754.2 1138 82.5
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1744.9 1141 83.2
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1729.1 1140 80.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1722.2 1140 80.0
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1699.9 1142 81.3
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1546.2 1154 72.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1538.9 1161 71.9
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1528.1 1153 73.5
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1519.2 1155 72.0
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1518.8 1157 71.0
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1511.5 1161 70.7
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1511.5 1151 70.8
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1503.8 1147 70.6
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1501.1 1156 72.6
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1498.0 1171 69.5
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1496.1 1165 71.2
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1493.8 1188 70.8
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1486.5 1156 72.1
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1485.3 1189 67.9
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1484.5 1152 71.0
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1483.0 1189 68.1
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1481.5 1152 69.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1480.3 1157 69.7
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1477.6 1161 70.5
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1476.8 1152 69.9
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1476.1 1179 68.5
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1476.1 1160 70.1
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1475.3 1179 68.8
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1474.1 1160 71.1
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1471.4 1157 71.5
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1469.5 1176 68.7
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1469.1 1157 71.6
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1462.2 1155 71.1
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1451.0 1174 70.5
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1444.9 1164 68.6
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1443.7 1162 70.8
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1440.6 1177 68.8
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1440.2 1154 67.9
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1436.8 1156 70.2
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1432.9 1152 68.1
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1431.0 1161 69.1
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1429.1 1149 69.2
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1425.6 1161 69.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1425.2 1154 69.0
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1421.4 1153 69.6
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1416.0 1171 67.1
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1410.6 1150 69.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1409.0 1156 66.0
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1403.7 1163 68.7
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1145 69.5
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1397.1 1147 68.4
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1396.7 1147 68.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1396.3 1147 68.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1146 68.5
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1389.8 1148 67.9
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1389.0 1136 69.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1155 65.6
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1160 67.2
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1380.5 1148 68.0
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1113 68.0
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1375.5 1166 67.0
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1374.4 1171 67.0
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1374.0 1182 66.5
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1372.8 1166 66.9
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1372.5 1175 67.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1371.3 1168 66.8
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1369.4 1167 67.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1164 66.9
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1366.7 1164 66.5
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1365.1 1169 66.5
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1365.1 1154 66.6
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1358.2 1215 64.1
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1341.6 1161 65.7
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1330.5 1148 66.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1323.1 1157 64.0
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1319.7 1162 62.8
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1319.7 1174 63.9
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1311.2 1220 62.5
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1310.8 1161 63.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1211.1 940 71.7
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1196.0 886 72.3
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1135.2 1036 64.0
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1095.9 1201 53.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1094.7 915 66.1
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1094.7 1233 53.4
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1088.2 1241 50.9
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 2.0e-294 1016.1 741 70.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.9e-285 985.7 1155 52.1
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-264 916.8 731 67.0
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.8e-248 862.4 1409 41.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 7.3e-244 848.2 589 75.4
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.2e-243 845.1 588 78.7
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.3e-216 757.7 519 76.1
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 2.9e-216 756.5 519 76.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.1e-212 744.6 615 65.0
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.8e-211 739.2 506 76.7
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 9.1e-194 681.8 624 61.5
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.4e-181 641.3 616 61.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 5.4e-170 602.8 1183 36.3
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.6e-166 591.3 569 61.3
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.3e-159 567.0 567 57.8
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 9.2e-154 548.9 554 57.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.9e-139 500.0 463 63.1
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.2e-138 497.3 393 67.2
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 2.6e-132 477.6 545 53.0
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.6e-124 451.1 319 74.3
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 3.4e-124 450.7 331 71.6
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.3e-115 422.2 766 35.9
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 9.3e-106 389.4 550 46.4
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 3.7e-102 377.5 494 50.6
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.0e-96 357.8 401 53.9
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.8e-96 356.3 382 55.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.4e-93 348.2 359 52.6
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 5.5e-90 337.0 213 82.2
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.9e-82 312.0 1181 27.2
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 3.5e-76 291.2 253 56.1
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.2e-74 284.3 254 64.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 7.2e-74 283.5 440 47.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.6e-73 282.3 223 71.3
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 6.8e-72 276.9 174 87.4
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 3.7e-70 271.2 242 62.8
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 7.0e-69 266.9 149 91.9
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 6.8e-64 250.4 147 83.7
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.2e-63 249.6 150 80.7
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 2.0e-52 212.2 113 93.8
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.7e-52 211.8 372 41.7
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.0e-51 209.9 197 59.4
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.9e-51 208.0 111 93.7
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-50 205.7 113 91.2
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 9.5e-50 203.4 106 95.3
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-49 203.0 141 77.3
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-49 202.2 113 90.3
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 4.7e-49 201.1 372 40.6
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 4.0e-48 198.0 328 42.4
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 2.6e-47 195.3 372 40.1
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-46 191.8 109 89.9
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 3.0e-43 181.8 106 89.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 3.6e-41 174.9 99 90.9
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.1e-37 163.3 89 91.0
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.4e-37 162.2 97 80.4
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 9.2e-37 160.2 234 47.9
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.8e-36 157.1 588 27.2
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-33 149.8 82 89.0
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.5e-31 142.9 122 59.8
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.1e-28 132.5 148 48.6
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.1e-28 132.5 72 93.1
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 5.8e-23 114.4 85 70.6
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 3.2e-21 108.6 71 77.5
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 4.2e-21 108.2 159 47.2
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.6e-20 106.3 159 46.5
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.1e-19 101.3 91 62.6


User provided reference genes

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